Evolution and diversity of the human hepatitis D virus genome

Advances in Bioinformatics

Volumn 2010, Issue , 2010, Pages

  Lo, Szecheng J ^a   Huang, Chi Ruei ^a,b  

^a NATIONAL YANG MING UNIVERSITY   (Taiwan)

^b CHANG GUNG UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

HEPATITIS DELTA VIRUS; RNA VIRUSES; VIROIDS;

EID: 78349274009     PISSN: 16878027     EISSN: 16878035     Source Type: Journal    
DOI: 10.1155/2010/323654     Document Type: Review

References (61)

1. Chen P. J., Chen D. S., Hepatitis B virus infection The New England Journal of Medicine 1998 338 1312 1313
2. Tiollais P., Pourcel C., Dejean A., The hepatitis B virus Nature 1985 317 489 495 (Pubitemid 16224154)
3. Gust I. D., Burrell C. J., Coulepis A. G., Robinson W. S., Zuckerman A. J., Taxonomic classification of human hepatitis B virus Intervirology 1986 25 1 14 29
4. Lai M. M. C., The molecular biology of hepatitis delta virus Annual Review of Biochemistry 1995 64 259 286
5. Makino S., Chang M.-F., Shieh C.-K., Molecular cloning and sequencing of a human hepatitis delta () virus RNA Nature 1987 329 6137 343 346
6. Taylor J. M., Hepatitis delta virus Virology 2006 344 1 71 76
7. Wang K.-S., Choo Q.-L., Weiner A. J., Structure, sequence and expression of the hepatitis delta () viral genome Nature 1986 323 508 514
8. Rizzetto M., Hoyer B., Canese M. G., Shih J. W., Purcell R. H., Gerin J. L., delta agent: association of delta antigen with hepatitis B surface antigen and RNA in serum of delta-infected chimpanzees Proceedings of the National Academy of Sciences of the United States of America 1980 77 10 6124 6128
9. Tsagris E. M., Martinez de Alba A. E., Gozmanova M., Kalantidis K., Viroids Cellular Microbiology 2008 10 11 2168 2179
10. Iyer L. M., Balaji S., Koonin E. V., Aravind L., Evolutionary genomics of nucleo-cytoplasmic large DNA viruses Virus Research 2006 117 1 156 184
11. Strauss E. J., Intracellular pathogens: a virus joins the movement Current Biology 1996 6 5 504 507
12. Joyce G. F., The antiquity of RNA-based evolution Nature 2002 418 6894 214 221
13. Miller R. H., Robinson W. S., Common evolutionary origin of hepatitis B virus and retroviruses Proceedings of the National Academy of Sciences of the United States of America 1986 83 8 2531 2535
14. Cracraft J., Donoghue M. J., Assembling the Tree of Life 2004 New York, NY, USA Oxford University Press
15. Rizzetto M., Canese M. G., Arico S., Immunofluorescence detection of new antigen-antibody system ( /anti- ) associated to hepatitis B virus in liver and in serum of HBsAg carriers Gut 1977 18 12 997 1003
16. Ponzetto A., Cote P. J., Popper H., Transmission of the hepatitis B virus-associated agent to the eastern woodchuck Proceedings of the National Academy of Sciences of the United States of America 1984 81 7 2208 2212
17. Rizzetto M., Canese M. G., Gerin J. L., London W. T., Sly D. L., Purcell R. H., Transmission of the hepatitis B virus-associated delta antigen to chimpazees Journal of Infectious Diseases 1980 141 5 590 602
18. Casey J. L., Brown T. L., Colan E. J., Wignall F. S., Gerin J. L., A genotype of hepatitis D virus that occurs in northern South America Proceedings of the National Academy of Sciences of the United States of America 1993 90 19 9016 9020
19. Chien R.-N., Chiu K.-W., Chu C.-M., Liaw Y.-F., Acute hepatitis in HBsAg carriers: comparisons among clinical features due to HDV superinfection and other etiologies Chinese Journal of Gastroenterology 1991 8 8 12
20. Kos A., Dijkema R., Arnberg A. C., van der Meide P. H., Schellekens H., The hepatitis delta () virus possesses a circular RNA Nature 1986 323 6088 558 560
21. Lehmann E., Brueckner F., Cramer P., Molecular basis of RNA-dependent RNA polymerase II activity Nature 2007 450 7168 445 449
22. Chen P.-J., Kalpana G., Goldberg J., Structure and replication of the genome of the hepatitis virus Proceedings of the National Academy of Sciences of the United States of America 1986 83 22 8774 8778
23. Kolk M. H., Heus H. A., Hilbers C. W., The structure of the isolated, central hairpin of the HDV antigenomic ribozyme: novel structural features and similarity of the loop in the ribozyme and free in solution EMBO Journal 1997 16 12 3685 3692
24. Kuo M. Y.-P., Sharmeen L., Dinter-Gottlieb G., Taylor J., Characterization of self-cleaving RNA sequences on the genome and antigenome of human hepatitis delta virus Journal of Virology 1988 62 12 4439 4444
25. Perrotta A. T., Been M. D., A pseudoknot-like structure required for efficient self-cleavage of hepatitis delta virus RNA Nature 1991 350 6317 434 436
26. Chang M.-F., Baker S. C., Soe L. H., Human hepatitis delta antigen is a nuclear phosphoprotein with RNA-binding activity Journal of Virology 1988 62 7 2403 2410
27. Kuo M. Y.-P., Goldberg J., Coates L., Mason W., Gerin J., Taylor J., Molecular cloning of hepatitis delta virus RNA from an infected woodchuck liver: sequence, structure, and applications Journal of Virology 1988 62 6 1855 1861
28. Casey J. L., Gerin J. L., Hepatitis D virus RNA editing: specific modification of adenosine in the antigenomic RNA Journal of Virology 1995 69 12 7593 7600
29. Nie X., Chang J., Taylor J. M., Alternative processing of hepatitis delta virus antigenomic RNA transcripts Journal of Virology 2004 78 9 4517 4524
30. Polson A. G., Bass B. L., Casey J. L., RNA editing of hepatitis delta virus antigenome by dsRNA-adenosine deaminase Nature 1996 380 6573 454 456
31. Polson A. G., Ley H. L. III, Bass B. L., Casey J. L., Hepatitis delta virus RNA editing is highly specific for the amber/W site and is suppressed by hepatitis delta antigen Molecular and Cellular Biology 1998 18 1919 1926
32. Sato S., Wong S. K., Lazinski D. W., Hepatitis delta virus minimal substrates competent for editing by ADAR1 and ADAR2 Journal of Virology 2001 75 18 8547 8555
33. Wong S. K., Lazinski D. W., Replicating hepatitis delta virus RNA is edited in the nucleus by the small form of ADAR1 Proceedings of the National Academy of Sciences of the United States of America 2002 99 23 15118 15123
34. Wu T.-T., Bichko V. V., Ryu W.-S., Lemon S. M., Taylor J. M., Hepatitis delta virus mutant: effect on RNA editing Journal of Virology 1995 69 11 7226 7231
35. Chang F.-L., Chen P.-J., Tu S.-J., Wang C.-J., Chen D.-S., The large form of hepatitis antigen is crucial for assembly of hepatitis virus Proceedings of the National Academy of Sciences of the United States of America 1991 88 19 8490 8494
36. Chao M., Hsieh S.-Y., Taylor J., Role of two forms of hepatitis delta virus antigen: evidence for a mechanism of self-limiting genome replication Journal of Virology 1990 64 10 5066 5069
37. Hwang S. B., Lai M. M. C., Isoprenylation mediates direct protein-protein interactions between hepatitis large delta antigen and hepatitis B virus surface antigen Journal of Virology 1993 67 12 7659 7662
38. Chang M.-F., Chen C.-J., Chang S. C., Mutational analysis of delta antigen: effect on assembly and replication of hepatitis delta virus Journal of Virology 1994 68 2 646 653
39. Glenn J. S., Watson J. A., Havel C. M., White J. M., Identification of a prenylation site in delta virus large antigen Science 1992 256 5061 1331 1333
40. Lee C.-Z., Chen P.-J., Lai M. M. C., Chen D.-S., Isoprenylation of large hepatitis delta antigen is necessary but not sufficient for hepatitis delta virus assembly Virology 1994 199 1 169 175
41. Wang T.-C., Chao M., RNA recombination of hepatitis delta virus in natural mixed-genotype infection and transfected cultured cells Journal of Virology 2005 79 4 2221 2229
42. Le Gal F., Gault E., Ripault M.-P., Eighth major clade for hepatitis delta virus Emerging Infectious Diseases 2006 12 9 1447 1450
43. Radjef N., Gordien E., Ivaniushina V., Molecular phylogenetic analyses indicate a wide and ancient radiation of African hepatitis delta virus, suggesting a deltavirus genus of at least seven major clades Journal of Virology 2004 78 2537 2544
44. Salehi-Ashtiani K., Luptak A., Litovchick A., Szostak J. W., A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene Science 2006 313 5794 1788 1792
45. Negro F., Gerin J. L., Purcell R. H., Miller R. H., Basis of hepatitis delta virus disease? Nature 1989 341, article 111
46. Young B., Hicke B., Delta virus as a cleaver Nature 1990 343, article 28
47. Brazas R., Ganem D., A cellular homolog of hepatitis delta antigen: implications for viral replication and evolution Science 1996 274 5284 90 94
48. Gudima S. O., Chang J., Taylor J. M., Reconstitution in cultured cells of replicating HDV RNA from pairs of less than full-length RNAs RNA 2005 11 90 98
49. Wu J.-C., Chiang T.-Y., Shine W.-K., Recombination of hepatitis D virus RNA sequences and its implications Molecular Biology and Evolution 1999 16 11 1622 1632
50. Chao M., RNA recombination in hepatitis delta virus: implications regarding the abilities of mammalian RNA polymerases Virus Research 2007 127 2 208 215
51. Gudima S. O., Chang J., Taylor J. M., Restoration in vivo of defective hepatitis delta virus RNA genomes RNA 2006 12 6 1061 1073
52. Feitelson M. A., Miller R. H., X gene-related sequences in the core gene of duck and heron hepatitis B viruses Proceedings of the National Academy of Sciences of the United States of America 1988 85 16 6162 6166
53. Huang C., Chang S. C., Yu I.-C., Tsay Y.-G., Chang M.-F., Large hepatitis delta antigen is a novel clathrin adaptor-like protein Journal of Virology 2007 81 11 5985 5994
54. Wang Y. C., Huang C. R., Chao M., Lo S. J., The C-terminal sequence of the large hepatitis delta antigen is variable but retains the ability to bind clathrin Virology Journal 2009 6, article 31
55. Wang Y.-H., Chang S. C., Huang C., Li Y.-P., Lee C.-H., Chang M.-F., Novel nuclear export signal-interacting protein, NESI, critical for the assembly of hepatitis delta virus Journal of Virology 2005 79 13 8113 8120
56. Hunt T. A., Urbanowski M. D., Kakani K., Law L.-M. J., Brinton M. A., Hobman T. C., Interactions between the West Nile virus capsid protein and the host cell-encoded phosphatase inhibitor, I2PP2A Cellular Microbiology 2007 9 11 2756 2766
57. Lin S.-S., Chang S. C., Wang Y.-H., Sun C.-Y., Chang M.-F., Specific interaction between the hepatitis delta virus RNA and glyceraldehyde 3-phosphate dehydrogenase: an enhancement on ribozyme catalysis Virology 2000 271 1 46 57
58. Sikora D., Greco-Stewart V. S., Miron P., Pelchat M., The hepatitis delta virus RNA genome interacts with eEF1A1, p45nrb, hnRNP-L, GAPDH and ASF/SF2 Virology 2009 390 1 71 78
59. Wang R. Y.-L., Nagy P. D., Tomato bushy stunt virus Co-Opts the RNA-binding function of a host metabolic enzyme for viral genomic RNA synthesis Cell Host and Microbe 2008 3 3 178 187
60. Yang S. H., Liu M. L., Tien C. F., Chou S. J., Chang R. Y., Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) interaction with 3′ ends of Japanese encephalitis virus RNA and colocalization with the viral NS5 protein Journal of Biomedical Science 2009 16, article 40
61. Anisimova M., Yang Z., Molecular evolution of the hepatitis delta virus antigen gene: recombination or positive selection? Journal of Molecular Evolution 2004 59 815 826