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Volumn 6401 LNAI, Issue , 2010, Pages 240-248

A frequent pattern mining method for finding planted (l, d)-motifs of unknown length

Author keywords

[No Author keywords available]

Indexed keywords

APRIORI; BINDING MOTIF; BREADTH-FIRST SEARCH; CLASSICAL ALGORITHMS; DOWNWARD CLOSURE PROPERTIES; EFFICIENT ALGORITHM; EMPIRICAL STUDIES; EXISTING METHOD; FREQUENT PATTERN MINING; MOLECULAR MECHANISM; SEARCH SPACES; TRANSCRIPTIONAL REGULATION;

EID: 78349248601     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-16248-0_37     Document Type: Conference Paper
Times cited : (1)

References (20)
  • 1
    • 21144439147 scopus 로고    scopus 로고
    • Assessing computational tools for the discovery of transcription factor binding sites
    • Tompa, M.: Assessing computational tools for the discovery of transcription factor binding sites. Nature Biotechnology 23, 137-144 (2005)
    • (2005) Nature Biotechnology , vol.23 , pp. 137-144
    • Tompa, M.1
  • 2
    • 26444584579 scopus 로고    scopus 로고
    • Limitations and potentials of current motif discovery algorithms
    • Hu, J., Li, B., Kihara, D.: Limitations and potentials of current motif discovery algorithms. Nucleic Acids Research 33(15), 4899-4913 (2005)
    • (2005) Nucleic Acids Research , vol.33 , Issue.15 , pp. 4899-4913
    • Hu, J.1    Li, B.2    Kihara, D.3
  • 3
    • 38549144819 scopus 로고    scopus 로고
    • A survey of DNA motif finding algorithms
    • Das, M.K., Dai, H.K.: A survey of DNA motif finding algorithms. BMC Bioinformatics 8(suppl. 7) (2007)
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 7
    • Das, M.K.1    Dai, H.K.2
  • 5
    • 0000900670 scopus 로고    scopus 로고
    • Spelling approximate repeated or common motifs using a suffix tree
    • Lucchesi, C.L., Moura, A.V. (eds.) LNCS Springer, Heidelberg
    • Sagot, M.F.: Spelling approximate repeated or common motifs using a suffix tree. In: Lucchesi, C.L., Moura, A.V. (eds.) LATIN 1998. LNCS, vol. 1380, pp. 111-127. Springer, Heidelberg (1998)
    • (1998) LATIN 1998 , vol.1380 , pp. 111-127
    • Sagot, M.F.1
  • 6
    • 0344376570 scopus 로고    scopus 로고
    • Finding composite regulatory patterns in DNA sequences
    • Eskin, E., Pevzner, P.: Finding composite regulatory patterns in DNA sequences. Bioinformatics, 354-363 (2002)
    • (2002) Bioinformatics , pp. 354-363
    • Eskin, E.1    Pevzner, P.2
  • 8
    • 0036772507 scopus 로고    scopus 로고
    • Subtle motif: Defining the limits of finding algorithms
    • Keich, U., Pevzner, P.A.: Subtle motif: defining the limits of finding algorithms. Bioinformatics 18(10), 1382-1390 (2002)
    • (2002) Bioinformatics , vol.18 , Issue.10 , pp. 1382-1390
    • Keich, U.1    Pevzner, P.A.2
  • 9
    • 2342476143 scopus 로고    scopus 로고
    • Finding subtle motifs by branching from sample string
    • Price, A., Ramabhadran, S., Pevzner, P.A.: Finding subtle motifs by branching from sample string. Bioinformatics 2, 1-7 (2003)
    • (2003) Bioinformatics , vol.2 , pp. 1-7
    • Price, A.1    Ramabhadran, S.2    Pevzner, P.A.3
  • 11
    • 0035224579 scopus 로고    scopus 로고
    • An algorithm for finding signals of unknown length in DNA sequences
    • Pavesi, G., Mauri, G., Pesole, G.: An algorithm for finding signals of unknown length in DNA sequences. Bioinformatics 17, 207-214 (2001)
    • (2001) Bioinformatics , vol.17 , pp. 207-214
    • Pavesi, G.1    Mauri, G.2    Pesole, G.3
  • 16
    • 0027912333 scopus 로고
    • Detecting subtle sequence signals: A gibbs sampling strategy for multiple alignment
    • Lawrence, C.E., Altschul, S.F., et al.: Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment. Science 262, 208-214 (1993)
    • (1993) Science , vol.262 , pp. 208-214
    • Lawrence, C.E.1    Altschul, S.F.2
  • 17
    • 64149093451 scopus 로고    scopus 로고
    • An exact data mining method for finding center strings and all their instances
    • Lu, R.Q., Jia, C.Y., et al.: An exact data mining method for finding center strings and all their instances. IEEE Trans. on Knowledge and Data Engineering 19(4), 509-522 (2007)
    • (2007) IEEE Trans. on Knowledge and Data Engineering , vol.19 , Issue.4 , pp. 509-522
    • Lu, R.Q.1    Jia, C.Y.2
  • 18
    • 30344464649 scopus 로고    scopus 로고
    • An extension and novel solution to the (l, d)-motif challenge problem
    • Styczynski, M.P., Jensen, K.L.: An extension and novel solution to the (l, d)-motif challenge problem. Genome Informatics 15, 63-71 (2004)
    • (2004) Genome Informatics , vol.15 , pp. 63-71
    • Styczynski, M.P.1    Jensen, K.L.2
  • 19
    • 30344460682 scopus 로고    scopus 로고
    • A generic motif discovery algorithm for sequential data
    • Jensen, K.L., Styczynski, M.P.: et al: A generic motif discovery algorithm for sequential data. Bioinformatics 22, 21-28 (2006)
    • (2006) Bioinformatics , vol.22 , pp. 21-28
    • Jensen, K.L.1    Styczynski, M.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.