Range-wide population genetic structure of the European bitterling (Rhodeus amarus) based on microsatellite and mitochondrial DNA analysis

Molecular Ecology

Volumn 19, Issue 21, 2010, Pages 4708-4722

  Bryja, J ^a   Smith, C ^b   Konecny A ^a   Reichard, M ^a  

^a INSTITUTE OF VERTEBRATE BIOLOGY   (Czech Republic)

^b UNIVERSITY OF ST ANDREWS   (United Kingdom)

Author keywords

co evolution; conservation; fish; intraspecific introduction; non native populations

Indexed keywords

MICROSATELLITE DNA; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; CYPRINIFORMES; DNA SEQUENCE; EUROPE; GENETIC VARIABILITY; GENETICS; GENOTYPE; GEOGRAPHY; MOLECULAR EVOLUTION; PHYLOGEOGRAPHY; POPULATION GENETICS;

ANIMALS; BAYES THEOREM; CYPRINIDAE; DNA, MITOCHONDRIAL; EUROPE; EVOLUTION, MOLECULAR; GENETIC VARIATION; GENETICS, POPULATION; GENOTYPE; GEOGRAPHY; MICROSATELLITE REPEATS; MODELS, GENETIC; PHYLOGEOGRAPHY; SEQUENCE ANALYSIS, DNA;

CYPRINIDAE; RHODEUS; RHODEUS AMARUS;

EID: 78149457206     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2010.04844.x     Document Type: Article

References (70)

1. Banarescu PM, (1990) Zoogeography of Freshwaters. Vol. I. General Distribution and Dispersal of Freshwater Animals. Aula Verlag, Wiesbaden, Germany.
2. Bandelt HJ, Forster P, Röhl A, (1999) Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution, 16, 37 - 48.
3. Barluenga M, Sanetra M, Meyer A, (2006) Genetic admixture of burbot (Teleostei: Lota lota) in Lake Constance from two European glacial refugia. Molecular Ecology, 15, 3583 - 3600.
4. Beaumont MA, Zhang W, Balding DJ, (2002) Approximate Bayesian computation in population genetics. Genetics, 162, 2025 - 2035.
5. Beaumont MA, Nielsen R, Robert C, et al. (2010) In defence of model-based inference in phylogeography. Molecular Ecology, 19, 436 - 446.
6. Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F,. (1996-2004) GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5000, Université de Montpellier II, Montpellier (France).
7. Benjamini Y, Hochberg Y, (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society. Series B: Statistical Methodology, 57, 289 - 300.
8. Bertorelle G, Benazzo A, Mona S, (2010) ABC as a flexible framework to estimate demography over space and time: some cons, many pros. Molecular Ecology, 19, 2609 - 2625.
9. Birky CW, Maruyama T, Fuerst P, (1983) An approach to population and evolutionary genetic theory for genes in mitochondria and chloroplasts, and some results. Genetics, 103, 513 - 527.
10. Bogutskaya NG, Komlev AM, (2001) Some new data on the morphology of Rhodeus sericeus sensu lato (Cyprinidae: Acheilognathinae) and a description of a new species, Rhodeus colchicus, from West Transcaucasia. Proceedings of the Zoological Institute, 287, 81 - 97.
11. Bohlen J, Šlechtová V, Bogutskaya N, Freyhof J, (2006) Across Siberia and over Europe: Phylogenetic relationships of the freshwater fish genus Rhodeus in Europe and the phylogenetic position of R.sericeus from the River Amur. Molecular Phylogenetics and Evolution, 40, 856 - 865.
12. Castilla JC, Collins AG, Meyer CP, Guinez R, Lindberg DR, (2002) Recent introduction of the dominant tunicate, Pyura praeputialis (Urochordata, Pyuridae) to Antofagasta, Chile. Molecular Ecology, 11, 1579 - 1584.
13. Chapuis MP, Estoup A, (2006) Microsatellite null alleles and estimation of population differentiation. Molecular Biology and Evolution, 24, 1 - 11.
14. Cornuet JM, Santos F, Beaumont MA, et al. (2008) Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation. Bioinformatics, 24, 2713 - 2719.
15. Crestanello B, Pecchioli E, Vernesi C, et al. (2009) The genetic impact of translocations and habitat fragmentation in chamois (Rupicapra spp). Journal of Heredity, 100, 691 - 708.
16. Csilléry K, Blum MGB, Gaggiotti OE, François O, (2010) Approximate Bayesian Computation (ABC) in practice. Trends in Ecology and Evolution, 25, 410 - 418.
17. Dawson DA, Burland TM, Douglas A, Le Comber SC, Bradshaw M, (2003) Isolation of microsatellite loci in the freshwater fish, the bitterling Rhodeus sericeus (Teleostei: Cyprinidae). Molecular Ecology Notes, 3, 199 - 202.
18. Durand JD, Persat H, Bouvet Y, (1999) Phylogeography and postglacial dispersion of the chub (Leuciscus cephalus) in Europe. Molecular Ecology, 8, 989 - 997.
19. Estoup A, Jarne P, Cornuet JM, (2002) Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis. Molecular Ecology, 11, 1591 - 1604.
20. European Commission (2002) Reference list of habitat types and species present in the continental region.
21. Evanno G, Regnaut S, Goudet J, (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology, 14, 2611 - 2620.
22. Falush D, Stephens M, Pritchard JK, (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics, 164, 1567 - 1587.
23. Flanders J, Jones G, Benda P, et al. (2009) Phylogeography of the greater horseshoe bat, Rhinolophus ferrumequinum: contrasting results from mitochondrial and microsatellite data. Molecular Ecology, 18, 306 - 318.
24. Frantz AC, Pourtois JT, Heuertz M, et al. (2006) Genetic structure and assignment tests demonstrate illegal translocation of red deer (Cervus elaphus) into a continuous population. Molecular Ecology, 15, 3191 - 3203.
25. Goudet J, (2001) FSTAT, a programme to estimate and test gene diversities and fixation indices (version 2.9.3). 2003. Available at.
26. Grosswald MG, (1980) Late weichselian ice sheet of Northern Eurasia. Quaternary Research, 13, 1 - 32.
27. Gum B, Gross R, Kuehn R, (2005) Mitochondrial and nuclear DNA phylogeography of European grayling (Thymallus thymallus): evidence for secondary contact zones in central Europe. Molecular Ecology, 14, 1707 - 1725.
28. Heckel G, Burri R, Fink S, Desmet J, Excoffier L, (2005) Genetic structure and colonization processes in European populations of the common vole, Microtus arvalis. Evolution, 59, 2231 - 2242.
29. Jakobsson M, Rosenberg NA, (2007) CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics, 23, 1801 - 1806.
30. Karatayev AY, Burlakova LE, Padilla DK, (1997) The effects of Dreissena polymorpha (Pallas) invasion on aquatic communities in eastern Europe. Journal of Shellfish Research, 16, 187 - 203.
31. Kawamura K, Ueda T, Arai R, et al. (2001) Genetic introgression by the rose bitterling, Rhodeus ocellatus ocellatus, into the Japanese rose bitterling, R-o.kurumeus (Teleostei: Cyprinidae). Zoological Science, 18, 1027 - 1039.
32. Kirchhofer A, Hefti D, (1996) Conservation of Endangered Freshwater Fish in Europe. Birkhauser Verlag, Basel.
33. Kontula T, Väinöla R, (2001) Post glacial colonization of Northern Europe by distinct phylogeographic lineages of the bullhead, Cottus gobio. Molecular Ecology, 10, 1983 - 2002.
34. Kotlík P, Berrebi P, (2001) Phylogeography of the barbel (Barbus barbus) assessed by mitochondrial DNA variation. Molecular Ecology, 10, 2177 - 2185.
35. Kotlík P, Bogutskaya NG, Ekmekci FG, (2004) Circum Black Sea phylogeography of Barbus freshwater fishes: divergence in the Pontic glacial refugium. Molecular Ecology, 13, 87 - 95.
36. Kottelat M, Freyhof J, (2007) Handbook of European Freshwater Fishes. Publications Kottelat, Cornol.
37. Koutrakis ET, Kokkinakis AK, Tsikliras AC, Eleftheriadis EA, (2003) Characteristics of the European bitterling Rhodeus amarus (Cyprinidae) in the Rihios River, Greece. Journal of Freshwater Ecology, 18, 615 - 624.
38. Kozhara AV, Zhulidov AV, Gollasch S, et al. (2007) Range extension and conservation status of the bitterling, Rhodeus sericeus amarus in Russia and adjacent countries. Folia Zoologica, 56, 97 - 108.
39. Leary RF, Allendorf FW, Forbes SH, (1993) Conservation genetics of bull trout in the Columbia and Klamath River drainages. Conservation Biology, 7, 856 - 865.
40. Van Leeuwen JFN, Froyd CA, Van Der Knaap WO, Coffey EE, Tye A, Willis KJ, (2008) Fossil pollen as a guide to conservation in the Galapagos. Science, 332, 1206.
41. Lelek A, (1987) Threatened Fishes of Europe, Vol. 1. Aula-Verlag, Wiesbaden.
42. Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451 - 1452.
43. Mabuchi K, Senou H, Nishida M, (2008) Mitochondrial DNA analysis reveals cryptic large-scale invasion of non-native genotypes of common carp (Cyprinus carpio) in Japan. Molecular Ecology, 17, 796 - 809.
44. Maitland PS, (1972) A Key to the Freshwater Fishes of the British Isles with Notes on their Distribution and Ecology (Scientific publication no. 27). Freshwater Biological Association, Ambleside.
45. Miyake T, Nakajima J, Onikura N, et al. (2010) The genetic status of two subspecies of Rhodeus atremius, an endangered bitterling in Japan. Conservation Genetics in press.
46. Morosawa T, Fujioka M, (2007) The status of four native and three alien bitterling species (Acheilognathinae) in Lake Kasumigaura, Japan. Japanese Journal of Ichthyology, 54, 129 - 137.
47. Nesbø CL, Fossheim T, Vøllestad LA, Jakobsen KS, (1999) Genetic divergence and phylogeographic relationships among European perch (Perca fluviatilis) populations reflect glacial refugia and postglacial colonization. Molecular Ecology, 8, 1387 - 1404.
48. Perdices A, Doadrio I, (2001) The molecular systematics and biogeography of the European cobitids based on mitochondrial DNA sequences. Molecular Phylogenetics and Evolution, 19, 468 - 478.
49. Petit RJ, (2004): Biological invasions at the gene level Diversity and Distributions, 10, 159 - 165.
50. Raymond M, Rousset F, (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248 - 249.
51. Reichard M, Jurajda P, Ondračková M, (2002) Interannual variability in seasonal dynamics and species composition of drifting young-of-the-year fishes in two European lowland rivers. Journal of Fish Biology, 60, 87 - 101.
52. Reichard M, Ondračková M, Przybylski M, Liu H, Smith C, (2006) The costs and benefits in an unusual symbiosis: experimental evidence that bitterling fish (Rhodeus sericeus) are parasites of unionid mussels in Europe. Journal of Evolutionary Biology, 19, 788 - 796.
53. Reichard M, Przybylski M, Kaniewska P, Liu H, Smith C, (2007) A possible evolutionary lag in the relationship between freshwater mussels and European bitterling. Journal of Fish Biology, 70, 709 - 725.
54. Reichard M, Smith C, Bryja J, (2008) Seasonal change in the opportunity for sexual selection. Molecular Ecology, 17, 642 - 651.
55. Reichard M, Polačik M, Tarkan AS, et al. (2010) The bitterling mussel coevolutionary relationship in areas of recent and ancient sympatry. Evolution doi
56. Rosenberg NA, (2004) DISTRUCT: a program for the graphical display of population structure. Molecular Ecology Notes, 4, 137 - 138.
57. Ryan WBF, Pitman WC III, Major CO, et al. (1997) An abrupt drowning of the Black Sea shelf. Marine Geology, 138, 119 - 126.
58. Smith C, Reichard M, Jurajda P, Przybylski M, (2004) The reproductive ecology of the European bitterling (Rhodeus sericeus). Journal of Zoology, 262, 107 - 124.
59. Starkel L, (1991) The Vistula river valley: a case study for central Europe. In: Temperate Paleohydrology (eds, Starkel L, Gregory KJ, Thornes JB,), pp. 171 - 188. John Wiley & Sons, New York, USA.
60. Storey JD, (2002) A direct approach to false discovery rates. Journal of the Royal Statistical Society. Series B: Statistical Methodology, 64, 479 - 498.
61. Suzuki N, (1998) Rhodeus atremius suigensis. In: Databook of Rare Wild Aquatic Organisms in Japan (ed. Fisheries Agency in Japan), pp. 134 - 135. Japan Fisheries Resource Conservation Association, Tokyo.
62. Templeton AR, (2010) Coalescent-based, maximum likelihood inference in phylogeography. Molecular Ecology, 19, 431 - 435.
63. Triantafyllidis A, Krieg F, Cottin C, Abatzopoulos TJ, Triantaphyllidis C, Guyomard R, (2002) Genetic structure and phylogeography of European catfish (Silurus glanis) populations. Molecular Ecology, 11, 1039 - 1055.
64. Van Damme D, Bogutskaya N, Hoffmann RC, Smith C, (2007) The introduction of the European bitterling (Rhodeus amarus) to west and central Europe. Fish and Fisheries, 8, 79 - 106.
65. Verdu P, Austerlitz F, Estoup A, et al. (2009) Origins and genetic diversity of pygmy hunter-gatherers from western Central Africa. Current Biology, 19, 312 - 318.
66. Wang S, Lewis CM, Jakobsson M, et al. (2007) Genetic variation and population structure in Native Americans. Public Library of Science, Genetics, 3, 2049 - 2067.
67. Weir BS, Cockerham CC, (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358 - 1370.
68. Wiepkema PR, (1961) An ethological analysis of the reproductive behaviour of the bitterling (Rhodeus amarus Bloch). Archives Neerlandaises de Zoologie, 14, 103 - 199.
69. Zaki SAH, Jordan WC, Reichard M, Przybylski M, Smith C, (2008) A morphological and genetic analysis of the European bitterling species complex. Biological Journal of the Linnean Society, 95, 337 - 347.
70. Zardoya R, Economidis PS, Doadrio I, (1999) Phylogenetic relationships of Greek Cyprinidae: Molecular evidence for at least two origins of the Greek cyprinid fauna. Molecular Phylogenetics and Evolution, 13, 122 - 131.