Differences in methylation at GATC sites in genomic DNA of campylobacter coli from turkeys and swine

Applied and Environmental Microbiology

Volumn 76, Issue 21, 2010, Pages 7314-7317

  Wright, Sandra ^a,d   Wilson, Simone ^b,e   Miller, William G ^c   Mandrell, Robert E ^c   Siletzky, Robin M ^a   Kathariou, Sophia ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

^b SAINT AUGUSTINE'S UNIVERSITY   (United States)

^c WESTERN REGIONAL RESEARCH CENTER   (United States)

^d Food and Drug Protection Division   (United States)

^e MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIMICROBIAL RESISTANCES; CAMPYLOBACTER COLI; DNA MODIFICATION; GENOMIC DNA; MULTILOCUS SEQUENCE TYPING;

ALKYLATION; GENES; METHYLATION;

DNA;

ANTIINFECTIVE AGENT; BACTERIAL DNA; GATC SPECIFIC TYPE II DEOXYRIBONUCLEASES; GATC-SPECIFIC TYPE II DEOXYRIBONUCLEASES; TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE;

ANTIMICROBIAL ACTIVITY; BACTERIUM; DIGESTION; EXPERIMENTAL STUDY; GENOME; METHYLATION;

ANIMAL; ANIMAL DISEASE; ANTIBIOTIC RESISTANCE; ARTICLE; BIRD DISEASE; CAMPYLOBACTER COLI; CAMPYLOBACTERIOSIS; DNA METHYLATION; DRUG EFFECT; GENETICS; METABOLISM; MICROBIOLOGY; SWINE; SWINE DISEASE; TURKEY (BIRD);

ANIMALS; ANTI-BACTERIAL AGENTS; CAMPYLOBACTER COLI; CAMPYLOBACTER INFECTIONS; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA METHYLATION; DNA, BACTERIAL; DRUG RESISTANCE, MICROBIAL; POULTRY DISEASES; SWINE; SWINE DISEASES; TURKEYS;

CAMPYLOBACTER COLI; SUIDAE;

EID: 78149426733     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00934-10     Document Type: Article

References (32)

1. Ando, T., Q. Xu, M. Torres, K. Kusugami, D. A. Israel, and M. J. Blaser. 2000. Restriction-modification system differences in Helicobacter pylori are a barrier to interstrain plasmid transfer. Mol. Microbiol. 37:1052-1065.
2. Burrus, V., C. Bontemps, B. Decaris, and G. Guedon. 2001. Characterization of a novel type II restriction-modification system, Sth368I, encoded by the integrative element ICESt1 of Streptococcus thermophilus CNRZ368. Appl. Environ. Microbiol. 67:1522-1528.
3. Casadesús, J., and D. Low. 2006. Epigenetic gene regulation in the bacterial world. Microbiol. Mol. Biol. Rev. 70:830-856.
4. Edmonds, P., B. M. Hall, W. R. Edwards, and K. M. Hartline. 1992. Presence of methylated adenine in GATC sequences in chromosomal DNAs from Campylobacter species. J. Bacteriol. 174:8156-8157.
5. Fouts, D. E., E. F. Mongodin, R. E. Mandrell, W. G. Miller, D. A. Rasko, J. Ravel, L. M. Brinkac, R. T. DeBoy, C. T. Parker, S. C. Daugherty, R. J. Dodson, A. S. Durkin, R. Madupu, S. A. Sullivan, J. U. Shetty, M. A. Ayodeji, A. Shvartsbeyn, M. C. Schatz, J. H. Badger, C. M. Fraser, and K. E. Nelson. 2005. Major structural differences and novel potential virulence mechanisms from the genomes of multiple Campylobacter species. PLoS Biol. 3:e15.
6. Groot, M. N., F. Nieboer, and T. Abee. 2008. Enhanced transformation efficiency of recalcitrant Bacillus cereus and Bacillus weihenstephanensis isolates upon in vitro methylation of plasmid DNA. Appl. Environ. Microbiol. 74:7817-7820.
7. Hopkins, K. L., M. Desai, J. A. Frost, J. Stanley, and J. M. J. Logan. 2004. Fluorescent amplified fragment length polymorphism genotyping of Campylobacter jejuni and Campylobacter coli strains and its relationship with host specificity, serotyping, and phage typing. J. Clin. Microbiol. 42:229-235.
8. Kim, J.-S., D. K. Carver, and S. Kathariou. 2006. Natural transformationmediated transfer of erythromycin resistance in Campylobacter coli strains from turkeys and swine. Appl. Environ. Microbiol. 72:1316-1321.
9. Korczak, B. M., M. Zurfluh, S. Emler, J. Kuhn-Oertli, and P. Kuhnert. 2009. Multiplex strategy for multilocus sequence typing, fla typing, and genetic determination of antimicrobial resistance of Campylobacter jejuni and Campylobacter coli isolates collected in Switzerland. J. Clin. Microbiol. 47: 1996-2007.
10. Lacks, S., and B. Greenberg. 1975. A deoxyribonuclease of Diplococcus pneumoniae specific for methylated DNA. J. Biol. Chem. 250:4060-4066.
11. Lang, P., T. Lefebure, W. Wang, P. Pavinski Bitar, R. J. Meinersmann, K. Kaya, and M. J. Stanhope. 2010. Expanded MLST genotyping and comparative genomic hybridization of Campylobacter coli isolates from multiple hosts. Appl. Environ. Microbiol. 76:1913-1925.
12. Lee, B. C., N. Reimers, H. J. Barnes, C. D'Lima, D. Carver, and S. Kathariou. 2005. Strain persistence and fluctuation of multiple-antibiotic resistant Campylobacter coli colonizing turkeys over successive production cycles. Foodborne Pathof. Dis. 2:103-110.
13. Litrup, E., M. Torpdahl, and E. M. Nielsen. 2007. Multilocus sequence typing performed on Campylobacter coli isolates from humans, broilers, pigs and cattle originating in Denmark. J. Appl. Microbiol. 103:210-218.
14. Logue, C. M., J. S. Sherwood, L. M. Elijah, P. A. Olah, and M. R. Dockter. 2003. The incidence of Campylobacter spp. on processed turkeys from processing plants in the midwestern United States. J. Appl. Microbiol. 95:234-241.
15. Luangtongkum, T., T. Y. Morishita, A. J. Ison, S. Huang, P. F. McDermott, and Q. Zhang. 2006. Effect of conventional and organic production practices on the prevalence and antimicrobial resistance of Campylobacter spp. in poultry. Appl. Environ. Microbiol. 72:3600-3607.
16. Mannarelli, B. M., T. S. Balganesh, B. Greenberg, S. S. Springhorn, and S. A. Lacks. 1985. Nucleotide sequence of the Dpn II DNA methylase gene of Streptococcus pneumoniae and its relationship to the dam gene of Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 82:4468-4472.
17. Marinus, M. G., and J. Casadesús. 2009. Roles of DNA adenine methylation in host-pathogen interactions: Mismatch repair, transcriptional regulation, and more. FEMS Microbiol. Rev. 33:488-503.
18. McClelland, M., M. Nelson, and E. Raschke. 1994. Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases. Nucleic Acids Res. 22:3640-3659.
19. Miller, W. G., M. D. Englen, S. Kathariou, I. V. Wesley, G. Wang, L. Pittenger-Alley, R. M. Siletzky, W. Muraoka, P. J. Fedorka-Cray, and R. E. Mandrell. 2006. Identification of host-associated alleles by multilocus sequence typing of Campylobacter coli strains from food animals. Microbiology 152:245-255.
20. Palmer, B. R., and M. G. Marinus. 1994. The dam and dcm strains of Escherichia coli-a review. Gene 143:1-12.
21. Reisenauer, A., L. S. Kahng, S. McCollum, and L. Shapiro. 1999. Bacteria DNA methylation: A cell cycle regulator? J. Bacteriol. 181:5135-5139.
22. Roberts, R. J., T. Vincze, J. Posfai, and D. Macelis. 2010. REBASE-a database for DNA restriction and modification: Enzymes, genes and genomes. Nucleic Acids Res. 38:D234-D236.
23. Saenz, Y., M. Zarazaga, M. Lantero, M. J. Gastanares, F. Baquero, and C. Torres. 2000. Antibiotic resistance in Campylobacter strains isolated from animals, foods, and humans in Spain in 1997-1998. Antimicrob. Agents Chemother. 44:267-271.
24. Seeber, S., C. Kessler, and F. Gotz. 1990. Cloning, expression and characterization of the Sau3AI restriction and modification genes in Staphylococcus carnosus TM300. Gene 94:37-43.
25. Sheppard, S. K., J. F. Dallas, M. MacRae, N. D. McCarthy, E. L. Sproston, F. J. Gormley, N. J. Strachan, I. D. Ogden, M. C. Maiden, and K. J. Forbes. 2009. Campylobacter genotypes from food animals, environmental sources and clinical disease in Scotland 2005/6. Int. J. Food Microbiol. 134:96-103.
26. Smith, K., N. Reimers, H. J. Barnes, B. C. Lee, R. Siletzky, and S. Kathariou. 2004. Campylobacter colonization of sibling turkey flocks reared under different management conditions. J. Food Prot. 67:1463-1468.
27. Thakur, S., W. E. Morrow, J. A. Funk, P. B. Bahnson, and W. A. Gebreyes. 2006. Molecular epidemiologic investigation of Campylobacter coli in swine production systems, using multilocus sequence typing. Appl. Environ. Microbiol. 72:5666-5669. (Erratum, 74:342.)
28. Twomey, D. P., L. L. McKay, and D. J. O'Sullivan. 1998. Molecular characterization of the Lactococcus lactis LlaKR2I restriction-modification system and effect of an IS982 element positioned between the restriction and modification genes. J. Bacteriol. 180:5844-5854.
29. Wesley, I. V., W. T. Muraoka, D. W. Trampel, and H. S. Hurd. 2005. Effect of preslaughter events on prevalence of Campylobacter jejuni and Campylobacter coli in market-weight turkeys. Appl. Environ. Microbiol. 71:2824-2831.
30. Wilson, G. G., and N. E. Murray. 1991. Restriction and modification systems. Annu. Rev. Genet. 25:585-627.
31. Wright, S. L., D. K. Carver, R. M. Siletzky, S. Romine, W. E. Morrow, and S. Kathariou. 2008. Longitudinal study of prevalence of Campylobacter jejuni and Campylobacter coli from turkeys and swine grown in close proximity. J. Food Prot. 71:1791-1796.
32. Zheng, W., and S. Kathariou. 1997. Host-mediated modification of Sau3AI restriction in Listeria monocytogenes: Prevalence in epidemic-associated strains. Appl. Environ. Microbiol. 63:3085-3089.