SCOPUS 정보 검색 플랫폼

Journal of Chemical Physics

Volumn 133, Issue 16, 2010, Pages

DNA capture into a nanopore: Interplay of diffusion and electrohydrodynamics

(2) Grosberg, Alexander Y a,b Rabin, Yitzhak c,d,e,f

a NEW YORK UNIVERSITY (United States)

b UNIVERSITÉ PIERRE ET MARIE CURIE (France)

c NORTHWESTERN UNIVERSITY (United States)

d BAR ILAN UNIVERSITY (Israel)

e Northwestern University (United States)

f UNIVERSITY OF CHICAGO (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BARRIER-LIMITED REGIMES; CAPTURE RATE; COUNTERIONS; DIFFUSION LIMITED; DNA MOLECULES; ELECTROOSMOTIC; ELECTROOSMOTIC FLOW; IONIC CURRENT; NONUNIFORM ELECTRIC FIELD;

ELECTRIC FIELDS; ELECTROHYDRODYNAMICS; ELECTROOSMOSIS; ENGINEERING EXHIBITIONS; NANOPORES;

DNA;

ARTICLE; CHEMISTRY; DIFFUSION; ELECTROOSMOSIS; NANOPORE;

DIFFUSION; DNA; ELECTROOSMOSIS; NANOPORES;

EID: 78149402689 PISSN: 00219606 EISSN: None Source Type: Journal
DOI: 10.1063/1.3495481 Document Type: Article

Times cited : (143)

References (43)

1
- 0030465241
- Characterization of individual polynucleotide molecules using a membrane channel
- DOI 10.1073/pnas.93.24.13770
- J. Kasianowicz, E. Brandin, D. Branton, and D. Deamer, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 93, 13770 (1996). 10.1073/pnas.93.24.13770 (Pubitemid 26424195)
- (1996) Proceedings of the National Academy of Sciences of the United States of America , vol.93 , Issue.24 , pp. 13770-13773
- Kasianowicz, J.J.¹ Brandin, E.² Branton, D.³ Deamer, D.W.⁴

2
- 0032762996
- BIOJAU 0006-3495, 10.1016/S0006-3495(99)77153-5
- M. Akeson, D. Branton, J. J. Kasianowicz, E. Brandin, and D. W. Deamer, Biophys. J. BIOJAU 0006-3495 77, 3227 (1999). 10.1016/S0006-3495(99)77153-5
- (1999) Biophys. J. , vol.77 , pp. 3227
- Akeson, M.¹ Branton, D.² Kasianowicz, J.J.³ Brandin, E.⁴ Deamer, D.W.⁵

3
- 0034298597
- PRLTAO 0031-9007, 10.1103/PhysRevLett.85.3057
- S. Henrickson, M. Misakian, B. Robertson, and J. Kasianowicz, Phys. Rev. Lett. PRLTAO 0031-9007 85, 3057 (2000). 10.1103/PhysRevLett.85.3057
- (2000) Phys. Rev. Lett. , vol.85 , pp. 3057
- Henrickson, S.¹ Misakian, M.² Robertson, B.³ Kasianowicz, J.⁴

4
- 0033980542
- Rapid nanopore discrimination between single polynucleotide molecules
- DOI 10.1073/pnas.97.3.1079
- A. Meller, L. Nivon, E. Brandin, J. Golovchenko, and D. Branton, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 97, 1079 (2000). 10.1073/pnas.97.3.1079 (Pubitemid 30080815)
- (2000) Proceedings of the National Academy of Sciences of the United States of America , vol.97 , Issue.3 , pp. 1079-1084
- Meller, A.¹ Nivon, L.² Brandin, E.³ Golovchenko, J.⁴ Branton, D.⁵

5
- 0035831563
- Voltage-driven DNA translocations through a nanopore
- DOI 10.1103/PhysRevLett.86.3435
- A. Meller, L. Nivon, and D. Branton, Phys. Rev. Lett. PRLTAO 0031-9007 86, 3435 (2001). 10.1103/PhysRevLett.86.3435 (Pubitemid 32380654)
- (2001) Physical Review Letters , vol.86 , Issue.15 , pp. 3435-3438
- Meller, A.¹ Nivon, L.² Branton, D.³

6
- 0034930381
- Sequence-specific detection of individual DNA strands using engineered nanopores
- DOI 10.1038/90236
- S. Howorka, S. Cheley, and H. Bayley, Nat. Biotechnol. NABIF9 1087-0156 19, 636 (2001). 10.1038/90236 (Pubitemid 32625433)
- (2001) Nature Biotechnology , vol.19 , Issue.7 , pp. 636-639
- Howorka, S.¹ Cheley, S.² Bayley, H.³

7
- 0036674122
- ELCTDN 0173-0835, 10.1002/1522-2683(200208)23:16<2583::AID- ELPS2583>3.0.CO;2-H
- A. Meller and D. Branton, Electrophoresis ELCTDN 0173-0835 23, 2583 (2002). 10.1002/1522-2683(200208)23:16<2583::AID-ELPS2583>3.0.CO;2-H
- (2002) Electrophoresis , vol.23 , pp. 2583
- Meller, A.¹ Branton, D.²

8
- 0037158591
- Charged polymer membrane translocation
- DOI 10.1063/1.1486208
- T. Ambjörnsson, S. P. Apell, Z. Konkoli, E. A. DiMarzio, and J. J. Kasianowicz, J. Chem. Phys. JCPSA6 0021-9606 117, 4063 (2002). 10.1063/1.1486208 (Pubitemid 34992690)
- (2002) Journal of Chemical Physics , vol.117 , Issue.8 , pp. 4063-4073
- Ambjornsson, T.¹ Apell, S.P.² Konkoli, Z.³ Di Marzio, E.A.⁴ Kasianowicz, J.J.⁵

9
- 0036672773
- ELCTDN 0173-0835, 10.1002/1522-2683(200208)23:16<2592::AID- ELPS2592>3.0.CO;2-L
- J. Nakane, M. Akeson, and A. Marziali, Electrophoresis ELCTDN 0173-0835 23, 2592 (2002). 10.1002/1522-2683(200208)23:16<2592::AID-ELPS2592>3.0. CO;2-L
- (2002) Electrophoresis , vol.23 , pp. 2592
- Nakane, J.¹ Akeson, M.² Marziali, A.³

10
- 0141955818
- NMAACR 1476-1122, 10.1038/nmat965
- J. Li, M. Gershow, D. Stein, E. Brandin, and J. Golovchenko, Nature Mater. NMAACR 1476-1122 2, 611 (2003). 10.1038/nmat965
- (2003) Nature Mater. , vol.2 , pp. 611
- Li, J.¹ Gershow, M.² Stein, D.³ Brandin, E.⁴ Golovchenko, J.⁵

11
- 0346734135
- Electroosmotic enhancement of the binding of a neutral molecule to a transmembrane pore
- DOI 10.1073/pnas.2531778100
- L. -Q. Gu, S. Cheley, and H. Bayley, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 100, 15498 (2003). 10.1073/pnas.2531778100 (Pubitemid 38021018)
- (2003) Proceedings of the National Academy of Sciences of the United States of America , vol.100 , Issue.26 , pp. 15498-15503
- Gu, L.-Q.¹ Cheley, S.² Bayley, H.³

12
- 9644273841
- NALEFD 1530-6984, 10.1021/nl048654j
- P. Chen, J. Gu, E. Brandin, Y. -R. Kim, Q. Wang, and D. Branton, Nano Lett. NALEFD 1530-6984 4, 2293 (2004). 10.1021/nl048654j
- (2004) Nano Lett. , vol.4 , pp. 2293
- Chen, P.¹ Gu, J.² Brandin, E.³ Kim, Y.-R.⁴ Wang, Q.⁵ Branton, D.⁶

13
- 23144448498
- Fast DNA translocation through a solid-state nanopore
- DOI 10.1021/nl048030d
- A. Storm, C. Storm, J. Chen, H. Zandbergen, J. Joanny, and C. Dekker, Nano Lett. NALEFD 1530-6984 5, 1193 (2005). 10.1021/nl048030d (Pubitemid 41084390)
- (2005) Nano Letters , vol.5 , Issue.7 , pp. 1193-1197
- Storm, A.J.¹ Storm, C.² Chen, J.³ Zandbergen, H.⁴ Joanny, J.-F.⁵ Dekker, C.⁶

14
- 26944479214
- Translocation of double-strand DNA through a silicon oxide nanopore
- DOI 10.1103/PhysRevE.71.051903, 051903
- A. J. Storm, J. H. Chen, H. W. Zandbergen, and C. Dekker, Phys. Rev. E PLEEE8 1063-651X 71, 051903 (2005). 10.1103/PhysRevE.71.051903 (Pubitemid 41480966)
- (2005) Physical Review E - Statistical, Nonlinear, and Soft Matter Physics , vol.71 , Issue.5 , pp. 1-10
- Storm, A.J.¹ Chen, J.H.² Zandbergen, H.W.³ Dekker, C.⁴

15
- 31544471731
- Salt dependence of ion transport and DMA translocation through solid-state nanopores
- DOI 10.1021/nl052107w
- R. M. M. Smeets, U. F. Keyser, D. Krapf, M. -Y. Wu, N. H. Dekker, and C. Dekker, Nano Lett. NALEFD 1530-6984 6, 89 (2006). 10.1021/nl052107w (Pubitemid 43166107)
- (2006) Nano Letters , vol.6 , Issue.1 , pp. 89-95
- Smeets, R.M.M.¹ Keyser, U.F.² Krapf, D.³ Wu, M.-Y.⁴ Dekker, N.H.⁵ Dekker, C.⁶

16
- 33645704642
- AFMDC6 1616-301X, 10.1002/adfm.200500471
- Z. S. Siwy, Adv. Funct. Mater. AFMDC6 1616-301X 16, 735 (2006). 10.1002/adfm.200500471
- (2006) Adv. Funct. Mater. , vol.16 , pp. 735
- Siwy, Z.S.¹

17
- 34548485416
- DNA conformation and base number simultaneously determined in a nanopore
- DOI 10.1002/elps.200700047
- D. Fologea, E. Brandin, J. Uplinger, D. Branton, and J. Li, Electrophoresis ELCTDN 0173-0835 28, 3186 (2007). 10.1002/elps.200700047 (Pubitemid 47506447)
- (2007) Electrophoresis , vol.28 , Issue.18 , pp. 3186-3192
- Fologea, D.¹ Brandin, E.² Uplinger, J.³ Branton, D.⁴ Li, J.⁵

18
- 33645542434
- BIOJAU 0006-3495, 10.1529/biophysj.105.070672
- J. Heng, A. Aksimentiev, C. Ho, P. Marks, Y. Grinkova, S. Sligar, K. Schulten, and G. Timp, Biophys. J. BIOJAU 0006-3495 90, 1098 (2006). 10.1529/biophysj.105.070672
- (2006) Biophys. J. , vol.90 , pp. 1098
- Heng, J.¹ Aksimentiev, A.² Ho, C.³ Marks, P.⁴ Grinkova, Y.⁵ Sligar, S.⁶ Schulten, K.⁷ Timp, G.⁸

19
- 64449088698
- NNAABX 1748-3387, 10.1038/nnano.2009.12
- J. Clarke, H. -C. Wu, L. Jayasinghe, A. Patel, S. Reid, and H. Bayley, Nat. Nanotechnol. NNAABX 1748-3387 4, 265 (2009). 10.1038/nnano.2009.12
- (2009) Nat. Nanotechnol. , vol.4 , pp. 265
- Clarke, J.¹ Wu, H.-C.² Jayasinghe, L.³ Patel, A.⁴ Reid, S.⁵ Bayley, H.⁶

20
- 70349952483
- NALEFD 1530-6984, 10.1021/nl803189k
- R. Smeets, S. Kowalczyk, A. Hall, N. Dekker, and C. Dekker, Nano Lett. NALEFD 1530-6984 9, 3089 (2009). 10.1021/nl803189k
- (2009) Nano Lett. , vol.9 , pp. 3089
- Smeets, R.¹ Kowalczyk, S.² Hall, A.³ Dekker, N.⁴ Dekker, C.⁵

21
- 33847273067
- Effective charge and free energy of DNA inside an ion channel
- DOI 10.1103/PhysRevE.75.021906
- J. Zhang and B. I. Shklovskii, Phys. Rev. E PLEEE8 1063-651X 75, 021906 (2007). 10.1103/PhysRevE.75.021906 (Pubitemid 46324913)
- (2007) Physical Review E - Statistical, Nonlinear, and Soft Matter Physics , vol.75 , Issue.2 , pp. 021906
- Zhang, J.¹ Shklovskii, B.I.²

22
- 76649116514
- NNAABX 1748-3387, 10.1038/nnano.2009.379
- M. Wanunu, W. Morrison, Y. Rabin, A. Y. Grosberg, and A. Meller, Nat. Nanotechnol. NNAABX 1748-3387 5, 160 (2010). 10.1038/nnano.2009.379
- (2010) Nat. Nanotechnol. , vol.5 , pp. 160
- Wanunu, M.¹ Morrison, W.² Rabin, Y.³ Grosberg, A.Y.⁴ Meller, A.⁵

23
- 0034898281
- ELCTDN 0173-0835, 10.1002/1522-2683(200107)22:12<2424::AID- ELPS2424>3.0.CO;2-1
- A. Nkodo, J. M. Garnier, B. Tinland, H. Ren, C. Desruisseaux, L. C. McCormick, G. Drouin, and G. W. Slater, Electrophoresis ELCTDN 0173-0835 22, 2424 (2001). 10.1002/1522-2683(200107)22:12<2424::AID-ELPS2424>3.0.CO;2-1
- (2001) Electrophoresis , vol.22 , pp. 2424
- Nkodo, A.¹ Garnier, J.M.² Tinland, B.³ Ren, H.⁴ Desruisseaux, C.⁵ McCormick, L.C.⁶ Drouin, G.⁷ Slater, G.W.⁸

24
- 67651177796
- JCPSA6 0021-9606, 10.1063/1.3170952
- T. Chou, J. Chem. Phys. JCPSA6 0021-9606 131, 034703 (2009). 10.1063/1.3170952
- (2009) J. Chem. Phys. , vol.131 , pp. 034703
- Chou, T.¹

25
- 0000267310
- ZPCFAX 0942-9352.
- M. von Smoluchowski, Z. Phys. Chem. ZPCFAX 0942-9352 92, 129 (1917).
- (1917) Z. Phys. Chem. , vol.92 , pp. 129
- Von Smoluchowski, M.¹

26
- 34547275473
- PHYSAG 0031-8914, 10.1016/S0031-8914(40)90098-2
- H. A. Kramers, Physica (Amsterdam) PHYSAG 0031-8914 7, 284 (1940). 10.1016/S0031-8914(40)90098-2
- (1940) Physica (Amsterdam) , vol.7 , pp. 284
- Kramers, H.A.¹

27
- 6244226478
- PRLTAO 0031-9007, 10.1103/PhysRevLett.76.3858
- D. Long, J. -L. Viovy, and A. Ajdari, Phys. Rev. Lett. PRLTAO 0031-9007 76, 3858 (1996). 10.1103/PhysRevLett.76.3858
- (1996) Phys. Rev. Lett. , vol.76 , pp. 3858
- Long, D.¹ Viovy, J.-L.² Ajdari, A.³

28
- 0034636226
- EULEEJ 0295-5075, 10.1209/epl/i2000-00299-3
- P. -G. de Gennes, K. Okumura, M. Shahinpoor, and K. Kim, Europhys. Lett. EULEEJ 0295-5075 50, 513 (2000). 10.1209/epl/i2000-00299-3
- (2000) Europhys. Lett. , vol.50 , pp. 513
- De Gennes, P.-G.¹ Okumura, K.² Shahinpoor, M.³ Kim, K.⁴

29
- 0003858739
- Course of Theoretical Physics Vol., 3rd ed. (Butterworth-Heinemann, Oxford).
- L. D. Landau and E. M. Lifshitz, Statistical Physics, Part 1, Course of Theoretical Physics Vol. 5, 3rd ed. (Butterworth-Heinemann, Oxford, 1980).
- (1980) Statistical Physics, Part 1 , vol.5
- Landau, L.D.¹ Lifshitz, E.M.²

30
- 11644276439
- JCPSA6 0021-9606, 10.1063/1.1672157
- G. Manning, J. Chem. Phys. JCPSA6 0021-9606 51, 924 (1969). 10.1063/1.1672157
- (1969) J. Chem. Phys. , vol.51 , pp. 924
- Manning, G.¹

31
- 0004232671
- (Princeton University Press, Princeton, NJ).
- H. Berg, Random Walks in Biology (Princeton University Press, Princeton, NJ, 1993).
- (1993) Random Walks in Biology
- Berg, H.¹

32
- 0036789421
- BIOJAU 0006-3495, 10.1016/S0006-3495(02)73977-5
- C. -F. Chou, J. O. Tegenfeldt, O. Bakajin, S. S. Chan, E. C. Cox, N. Darnton, T. Duke, and R. H. Austin, Biophys. J. BIOJAU 0006-3495 83, 2170 (2002). 10.1016/S0006-3495(02)73977-5
- (2002) Biophys. J. , vol.83 , pp. 2170
- Chou, C.-F.¹ Tegenfeldt, J.O.² Bakajin, O.³ Chan, S.S.⁴ Cox, E.C.⁵ Darnton, N.⁶ Duke, T.⁷ Austin, R.H.⁸

33
- 78149398243
- Consistent with the experimental setuof Ref., we do not consider here the possibility that DNA starts going into the pore by inserting a hairpin-type loothere; in other words, we assume that the pore diameter is much smaller than the DNA persistence length, which is reasonable for double stranded DNA.
- Consistent with the experimental setup of Ref., we do not consider here the possibility that DNA starts going into the pore by inserting a hairpin-type loop there; in other words, we assume that the pore diameter is much smaller than the DNA persistence length, which is reasonable for double stranded DNA.

34
- 6144254211
- PRLTAO 0031-9007, 10.1103/PhysRevLett.77.783
- W. Sung and P. Park, Phys. Rev. Lett. PRLTAO 0031-9007 77, 783 (1996). 10.1103/PhysRevLett.77.783
- (1996) Phys. Rev. Lett. , vol.77 , pp. 783
- Sung, W.¹ Park, P.²

35
- 0000102029
- JCPSA6 0021-9606, 10.1063/1.480386
- M. Muthukumar, J. Chem. Phys. JCPSA6 0021-9606 111, 10371 (1999). 10.1063/1.480386
- (1999) J. Chem. Phys. , vol.111 , pp. 10371
- Muthukumar, M.¹

36
- 78149367237
- g d.
- g d.

37
- 0003610623
- Course of Theoretical Physics Vol., 2nd ed. (Butterworth-Heinemann, Oxford).
- L. D. Landau and E. M. Lifshitz, Fluid Mechanics, Course of Theoretical Physics Vol. 6, 2nd ed. (Butterworth-Heinemann, Oxford, 1987).
- (1987) Fluid Mechanics , vol.6
- Landau, L.D.¹ Lifshitz, E.M.²

38
- 14644437692
- Electrostress diffusion coupling model for polyelectrolyte gels
- DOI 10.1021/ma047944j
- T. Yamaue, H. Mukai, K. Asaka, and M. Doi, Macromolecules MAMOBX 0024-9297 38, 1349 (2005). 10.1021/ma047944j (Pubitemid 40308195)
- (2005) Macromolecules , vol.38 , Issue.4 , pp. 1349-1356
- Yamaue, T.¹ Mukai, H.² Asaka, K.³ Doi, M.⁴

39
- 0013373034
- (Oxford University Press, New York)
- M. Rubinstein and R. Colby, Polymer Physics (Oxford University Press, New York, 2005).
- (2005) Polymer Physics
- Rubinstein, M.¹ Colby, R.²

40
- 84982060514
- RTCPA3 0165-0513, 10.1002/recl.19490681203
- O. Kratky and G. Porod, Recl. Trav. Chim. Pays-Bas RTCPA3 0165-0513 68, 1106 (1949). 10.1002/recl.19490681203
- (1949) Recl. Trav. Chim. Pays-Bas , vol.68 , pp. 1106
- Kratky, O.¹ Porod, G.²

41
- 77952997269
- JCPSA6 0021-9606, 10.1063/1.3429882
- M. Muthukumar, J. Chem. Phys. JCPSA6 0021-9606 132, 195101 (2010). 10.1063/1.3429882
- (2010) J. Chem. Phys. , vol.132 , pp. 195101
- Muthukumar, M.¹

42
- 0000741019
- BULVAX 0366-4422.
- M. von Smoluchowski, Bull. Int. Acad. Sci. Cracovie BULVAX 0366-4422 3, 184 (1903).
- (1903) Bull. Int. Acad. Sci. Cracovie , vol.3 , pp. 184
- Von Smoluchowski, M.¹

43
- 0003699033
- (Addison Wesley, Reading, MA)
- R. Feynman, R. Leighton, and M. Sands, Feynman Lectures in Physics (Addison Wesley, Reading, MA, 2005).
- (2005) Feynman Lectures in Physics
- Feynman, R.¹ Leighton, R.² Sands, M.³

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.