메뉴 건너뛰기




Volumn 132, Issue 1-2, 2011, Pages 64-70

Chromosome mapping of retrotransposable elements Rex1 and Rex3 in three fish species in the subfamily hypoptopomatinae (Teleostei, Siluriformes, Loricariidae)

Author keywords

Fluorescent in situhybridization; Genome; Heterochromatin; Hypoptopomatinae; Retrotransposons

Indexed keywords

NUCLEOTIDE;

EID: 78149361675     PISSN: 14248581     EISSN: None     Source Type: Journal    
DOI: 10.1159/000319620     Document Type: Article
Times cited : (32)

References (33)
  • 2
    • 0000326443 scopus 로고
    • Chromosome studies in hypoptopomatinae (pisces, siluriformes, loricariidae): I. XX/XY sex chromosome heteromorphism in pseudotocinclus tietensis
    • Andreata AA, Almeida-Toledo LF, Oliveira C, Toledo-Filho SA: Chromosome studies in Hypoptopomatinae (Pisces, Siluriformes, Loricariidae): I. XX/XY Sex chromosome heteromorphism in Pseudotocinclus tietensis. Cytologia 57:369-372 (1992).
    • (1992) Cytologia , vol.57 , pp. 369-372
    • Andreata, A.A.1    Almeida-Toledo, L.F.2    Oliveira, C.3    Toledo-Filho, S.A.4
  • 3
    • 0027304821 scopus 로고
    • Chromosome studies in Hypoptopomatinae (Pisces, Siluriformes, Loricariidae): II. ZZ/ZW Sex chromosome system, B chromosomes, and constitutive heterochromatin differentiation in Microlepidogaster leucofrenatus
    • Andreata AA, Almeida-Toledo LF, Oliveira C, Toledo-Filho AS: Chromosome studies in Hypoptopomatinae (Pisces, Siluriformes, Loricariidae): II. ZZ/ZW Sex chromosome system, B chromosomes, and constitutive heterochromatin differentiation in Microlepidogaster leucofrenatus. Cytogenet Cell Genet 63:215-220 (1993).
    • (1993) Cytogenet. Cell. Genet. , vol.63 , pp. 215-220
    • Andreata, A.A.1    Almeida-Toledo, L.F.2    Oliveira, C.3    Toledo-Filho, A.S.4
  • 4
    • 33645030996 scopus 로고    scopus 로고
    • Karyological characterization of four Neotropical fish species of the genus Hisonotus (Teleostei, Loricariidae, Hypoptopomatinae) from distinct Brazilian river basins
    • Andreata AA, Oliveira C, Foresti F: Karyological characterization of four Neotropical fish species of the genus Hisonotus (Teleostei, Loricariidae, Hypoptopomatinae) from distinct Brazilian river basins. Gene Mol Biol 29:62-63 (2006).
    • (2006) Gene Mol. Biol. , vol.29 , pp. 62-63
    • Andreata, A.A.1    Oliveira, C.2    Foresti, F.3
  • 5
    • 77955483330 scopus 로고    scopus 로고
    • Molecular cytogenetic study of heterochromatin in Hisonotus leucofrenatus (Teleostei, Loricariidae, Hypoptopomatinae)
    • Andreata AA, Ferreira DC, Foresti F, Oliveira C: Molecular cytogenetic study of heterochromatin in Hisonotus leucofrenatus (Teleostei, Loricariidae, Hypoptopomatinae). Hereditas 147:10-17 (2010).
    • (2010) Hereditas , vol.147 , pp. 10-17
    • Andreata, A.A.1    Ferreira, D.C.2    Foresti, F.3    Oliveira, C.4
  • 6
    • 0038148190 scopus 로고    scopus 로고
    • An active Non-LTR retrotransposon with tandem structure in the compact genome of the pufferfish Tetraodon nigroviridis
    • Bouneau L, Fisher C, Ozouf-Costaz C, Froschauer A, Jaillon O, et al: An active Non-LTR retrotransposon with tandem structure in the compact genome of the pufferfish Tetraodon nigroviridis. Genome Res 13:1686-1695 (2003).
    • (2003) Genome Res. , vol.13 , pp. 1686-1695
    • Bouneau, L.1    Fisher, C.2    Ozouf-Costaz, C.3    Froschauer, A.4    Jaillon, O.5
  • 7
    • 0031046820 scopus 로고    scopus 로고
    • Comparative analysis of the chromosomal and genomic organization of Ty1-copia-like retrotransposons in pteridophytes, gymnosperms and a ngiosperms
    • Brandes A, Heslop-Harrison JS, Kamm A, Kubis S, Doudrick RL, Schmidt T: Comparative analysis of the chromosomal and genomic organization of Ty1-copia-like retrotransposons in pteridophytes, gymnosperms and a ngiosperms. Plant Mol Biol 33:11-21 (1997).
    • (1997) Plant Mol. Biol. , vol.33 , pp. 11-21
    • Brandes, A.1    Heslop-Harrison, J.S.2    Kamm, A.3    Kubis, S.4    Doudrick, R.L.5    Schmidt, T.6
  • 8
    • 0028108183 scopus 로고
    • The evolutionary dynamics of repetitive DNA in eukaryotes
    • Charlesworth B, Snlegowski P, Stephan W: The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371:215-220 (1994).
    • (1994) Nature , vol.371 , pp. 215-220
    • Charlesworth, B.1    Snlegowski, P.2    Stephan, W.3
  • 9
    • 55049115671 scopus 로고    scopus 로고
    • Molecular systematic and historical biogeography of the armored Neotropical catfishes Hypoptopomatinae and Neoplecostominae (Siluriformes: Loricariidae)
    • Chiachio MC, Oliveira C, Montoya-Burgos JI: Molecular systematic and historical biogeography of the armored Neotropical catfishes Hypoptopomatinae and Neoplecostominae (Siluriformes: Loricariidae). Mol Phylogenet Evol 49:606-617 (2008).
    • (2008) Mol. Phylogenet Evol. , vol.49 , pp. 606-617
    • Chiachio, M.C.1    Oliveira, C.2    Montoya-Burgos, J.I.3
  • 10
    • 0037108746 scopus 로고    scopus 로고
    • Remarkable compartmentalization of transposable elements and pseudogenes in the heterochromatin of the Tetraodon nigroviridis genome
    • Da Silva C, Hadji H, Ozouf-Costaz C, Nicaud S, Jaillon O, et al: Remarkable compartmentalization of transposable elements and pseudogenes in the heterochromatin of the Tetraodon nigroviridis genome. Proc Natl Acad Sci USA 99:1636-1641 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 1636-1641
    • Silva, C.D.1    Hadji, H.2    Ozouf-Costaz, C.3    Nicaud, S.4    Jaillon, O.5
  • 11
    • 0029294077 scopus 로고
    • Primary sequence, copy number, and distribution of mariner transposons in the honey bee
    • Ebert PR, Hileman JP, Nguyen HT: Primary sequence, copy number, and distribution of mariner transposons in the honey bee. Insect Mol Biol 4:69-78 (1995).
    • (1995) Insect Mol. Biol. , vol.4 , pp. 69-78
    • Ebert, P.R.1    Hileman, J.P.2    Nguyen, H.T.3
  • 12
    • 33751275090 scopus 로고    scopus 로고
    • Comparative cytogenetics of nine species of Hypoptopomatinae (Teleostei: Siluriformes: Loricariidae): The importance of structural rearrangements in chromosome evolution
    • Ferreira DC, Chiachio MC, Takako AK, Andreata AA, Oliveira O, Foresti F: Comparative cytogenetics of nine species of Hypoptopomatinae (Teleostei: Siluriformes: Loricariidae): the importance of structural rearrangements in chromosome evolution. Caryologia 58:387-395 (2005).
    • (2005) Caryologia , vol.58 , pp. 387-395
    • Ferreira, D.C.1    Chiachio, M.C.2    Takako, A.K.3    Andreata, A.A.4    Oliveira, O.5    Foresti, F.6
  • 13
    • 3042790014 scopus 로고    scopus 로고
    • Global heterochromatic colocalization of transposable elements with minisatellites in the compact genome of the pufferfish Tetraodon nigroviridis
    • Fischer C, Bouneau L, Coutenceau JP, Weissenbach J, Vollf JN, Ozouf-Costaz C: Global heterochromatic colocalization of transposable elements with minisatellites in the compact genome of the pufferfish Tetraodon nigroviridis. Gene 336:175-183 (2004).
    • (2004) Gene , vol.336 , pp. 175-183
    • Fischer, C.1    Bouneau, L.2    Coutenceau, J.P.3    Weissenbach, J.4    Vollf, J.N.5    Ozouf-Costaz, C.6
  • 15
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA: BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Sym Ser 41:95-98 (1999).
    • (1999) Nucl. Acids Sym Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 16
    • 33745614284 scopus 로고    scopus 로고
    • Vertebrate DNA transposon as a natural mutator: The medaka fish Tol2 element contributes to genetic variation without recognizable traces
    • Koga A, Lida A, Hori H, Shimada A, Shima A: Vertebrate DNA transposon as a natural mutator: The medaka fish Tol2 element contributes to genetic variation without recognizable traces. Mol Biol Evol 23:1414-1419 (2006).
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 1414-1419
    • Koga, A.1    Lida, A.2    Hori, H.3    Shimada, A.4    Shima, A.5
  • 17
    • 0025094268 scopus 로고
    • Fluorescence in situ hybridization with Alu and L1 polymerase chain reaction probes for rapid characterization of human chromosomes in hybrid cell lines
    • Lichter P, Ledbetter SA, Ledbetter DH, Ward DC: Fluorescence in situ hybridization with Alu and L1 polymerase chain reaction probes for rapid characterization of human chromosomes in hybrid cell lines. Genetics 87:6634-6638 (1990).
    • (1990) Genetics , vol.87 , pp. 6634-6638
    • Lichter, P.1    Ledbetter, S.A.2    Ledbetter, D.H.3    Ward, D.C.4
  • 19
    • 67651087442 scopus 로고    scopus 로고
    • Genomic organization of repetitive DNAs in the cichlid fish Astronotus ocellatus
    • Mazzuchelli J, Martins C: Genomic organization of repetitive DNAs in the cichlid fish Astronotus ocellatus. Genetica 136:461-469 (2009).
    • (2009) Genetica , vol.136 , pp. 461-469
    • Mazzuchelli, J.1    Martins, C.2
  • 21
    • 0031593205 scopus 로고    scopus 로고
    • SINEs and LINEs share common 3' sequences: A review
    • Okada N, Hamada M, Ogiwara I, Ohshima K: SINEs and LINEs share common 3' sequences: a review. Gene 205:229-243 (1997).
    • (1997) Gene , vol.205 , pp. 229-243
    • Okada, N.1    Hamada, M.2    Ogiwara, I.3    Ohshima, K.4
  • 22
    • 0033385188 scopus 로고    scopus 로고
    • A LINE2 repetitive DNA sequence from the cichlid fish, Oreochromis niloticus: Sequence analysis and chromosomal distribution
    • Oliveira C, Chew J S K, Porto-Foresti F, Dobson M, Wright JM: A LINE2 repetitive DNA sequence from the cichlid fish, Oreochromis niloticus: sequence analysis and chromosomal distribution. Chromosoma 108:457-468 (1999).
    • (1999) Chromosoma , vol.108 , pp. 457-468
    • Oliveira, C.1    Chew, J.S.K.2    Porto-Foresti, F.3    Dobson, M.4    Wright, J.M.5
  • 23
    • 0141679003 scopus 로고    scopus 로고
    • Short interspersed repetitive elements (SINEs) from the cichlid fish, Oreochromis niloticus, and their chromosomal localization by fluorescent in situ hybridization
    • Oliveira C, Wang Y, Bryden LJ, Wrigth JM: Short interspersed repetitive elements (SINEs) from the cichlid fish, Oreochromis niloticus, and their chromosomal localization by fluorescent in situ hybridization. Caryologia 56:177-185 (2003).
    • (2003) Caryologia , vol.56 , pp. 177-185
    • Oliveira, C.1    Wang, Y.2    Bryden, L.J.3    Wrigth, J.M.4
  • 24
    • 1542288787 scopus 로고    scopus 로고
    • Genome dynamics and chromosomal localization of the non-LTR retrotransposons Rex1 and Rex3 in Antarctic fish
    • Ozouf-Costaz C, Brandt J, Korting C, Pisano E, Bonillo C, et al: Genome dynamics and chromosomal localization of the non-LTR retrotransposons Rex1 and Rex3 in Antarctic fish. Antarctic Science 16:51-57 (2004).
    • (2004) Antarctic Science , vol.16 , pp. 51-57
    • Ozouf-Costaz, C.1    Brandt, J.2    Korting, C.3    Pisano, E.4    Bonillo, C.5
  • 25
    • 0022446922 scopus 로고
    • Cytogenetic analysis using quantitative, high-sensitivity, fluorescence hybridization
    • Pinkel D, Straume T, Gray JW: Cytogenetic analysis using quantitative, high-sensitivity, fluorescence hybridization. Proc Natl Acad Sci USA 83:2934-2938 (1986).
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 2934-2938
    • Pinkel, D.1    Straume, T.2    Gray, J.W.3
  • 26
    • 0002440928 scopus 로고    scopus 로고
    • Molecular cloning
    • 2nd Ed Cold Spring Harbor Laboratory Press, Cold Spring Harbor 2001
    • Sambrook J, Maniatis T, Fritsch EF: Molecular Cloning. A Laboratory Manual, 2nd Ed (Cold Spring Harbor Laboratory Press, Cold Spring Harbor 2001).
    • A Laboratory Manual
    • Sambrook, J.1    Maniatis, T.2    Fritsch, E.F.3
  • 27
    • 33645036075 scopus 로고    scopus 로고
    • Subfamily Hypoptopomatinae (armored catfishes)
    • Reis RE, Kullander SO, Ferreris Jr CL eds:, Edipucrs, Porto Alegre
    • Schaefer SA: Subfamily Hypoptopomatinae (armored catfishes), in Reis RE, Kullander SO, Ferreris Jr CL (eds): Check List of the Freshwater Fishes of South America, pp 321-329 (Edipucrs, Porto Alegre 2003).
    • (2003) Check List of the Freshwater Fishes of South America , pp. 321-329
    • Schaefer, S.A.1
  • 28
    • 0020332775 scopus 로고
    • Highly repeated sequences in mammalian genomes
    • Singer MF: Highly repeated sequences in mammalian genomes. Int Rev Cytol 76:67-112 (1982).
    • (1982) Int. Rev. Cytol. , vol.76 , pp. 67-112
    • Singer, M.F.1
  • 29
    • 70349161217 scopus 로고    scopus 로고
    • Organization of repeated DNA elements in the genome of the cichlid fish Cichla kelberi and its contributions to the knowledge of fish genomes
    • Teixeira WG, Ferreira IA, Cabral-de-Mello DC, Mazzuchelli J, Valente GT, et al: Organization of repeated DNA elements in the genome of the cichlid fish Cichla kelberi and its contributions to the knowledge of fish genomes. Cytogenet Genome Res 125:224-234 (2009).
    • (2009) Cytogenet. Genome Res. , vol.125 , pp. 224-234
    • Teixeira, W.G.1    Ferreira, I.A.2    Cabral-de-Mello, D.C.3    Mazzuchelli, J.4    Valente, G.T.5
  • 30
    • 0345411346 scopus 로고    scopus 로고
    • The non-LTR retrotransposon Rex3 from the fish Xiphophorus is widespread among teleosts
    • Volff JN, Körting C, Sweeney K, Schartl M: The non-LTR retrotransposon Rex3 from the fish Xiphophorus is widespread among teleosts. Mol Biol Evol 16:1427-1438 (1999).
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1427-1438
    • Volff, J.N.1    Körting, C.2    Sweeney, K.3    Schartl, M.4
  • 31
    • 0033745895 scopus 로고    scopus 로고
    • Multiple lineages of the non-LTR retrotransposon Rex1 with varying success in invading fish genomes
    • Volff JN, Körting C, Schartl M: Multiple lineages of the non-LTR retrotransposon Rex1 with varying success in invading fish genomes. Mol Biol Evol 17:1673-1684 (2000).
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1673-1684
    • Volff, J.N.1    Körting, C.2    Schartl, M.3
  • 32
    • 0345724809 scopus 로고    scopus 로고
    • Diversity of retrotransposable elements in compact pufferfish genomes
    • Volff JN, Bouneau L, Ozouf-Costaz C, Fischer C: Diversity of retrotransposable elements in compact pufferfish genomes. Trends Genet 19:74-678 (2003).
    • (2003) Trends Genet. , vol.19 , pp. 74-678
    • Volff, J.N.1    Bouneau, L.2    Ozouf-Costaz, C.3    Fischer, C.4
  • 33
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: Data analysis in molecular biology and evolution
    • Xia X, Xie Z: DAMBE: Data analysis in molecular biology and evolution. J Heredity 92:371-373 (2001).
    • (2001) J. Heredity , vol.92 , pp. 371-373
    • Xia, X.1    Xie, Z.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.