-
1
-
-
24044542348
-
Tomographic bioluminescence imaging by use of a combined optical-PET (OPET) system: A computer simulation feasibility study
-
Alexandrakis G, Rannou F R and Chatziioannou A F 2005 Tomographic bioluminescence imaging by use of a combined optical-PET (OPET) system: a computer simulation feasibility study Phys. Med. Biol. 50 4225-41
-
(2005)
Phys. Med. Biol.
, vol.50
, pp. 4225-4241
-
-
Alexandrakis, G.1
Rannou, F.R.2
Chatziioannou, A.F.3
-
2
-
-
33845274917
-
-
Balay S, Buschelman K, Gropp W D, Kaushik D, Knepley M G, McInnes L C, Smith B F and Zhang H 2001 PETSc web page http://www.mcs.anl.gov/petsc
-
(2001)
PETSc web Page
-
-
Balay, S.1
Buschelman, K.2
Gropp, W.D.3
Kaushik, D.4
Knepley, M.G.5
McInnes, L.C.6
Smith, B.F.7
Zhang, H.8
-
3
-
-
0000945932
-
Three dimensional Monte Carlo code for photon migration through complex heterogeneous media including the adult human head
-
Boas D, Culver J, Stott J and Dunn A 2002 Three dimensional Monte Carlo code for photon migration through complex heterogeneous media including the adult human head Opt. Express 10 159-70
-
(2002)
Opt. Express
, vol.10
, pp. 159-170
-
-
Boas, D.1
Culver, J.2
Stott, J.3
Dunn, A.4
-
5
-
-
28644444654
-
Hyperspectral and multispectral bioluminescence optical tomography for small animal imaging
-
Chaudhari A J, Darvas F, Bading J R, Moats R A, Conti P S, Smith D J, Cherry S R and Leahy R M 2005 Hyperspectral and multispectral bioluminescence optical tomography for small animal imaging Phys. Med. Biol. 50 5421-41
-
(2005)
Phys. Med. Biol.
, vol.50
, pp. 5421-5441
-
-
Chaudhari, A.J.1
Darvas, F.2
Bading, J.R.3
Moats, R.A.4
Conti, P.S.5
Smith, D.J.6
Cherry, S.R.7
Leahy, R.M.8
-
6
-
-
1142263259
-
In vivo molecular and genomic imaging: New challenges for imaging physics
-
Cherry S R 2004 In vivo molecular and genomic imaging: new challenges for imaging physics Phys. Med. Biol. 49 R13-48
-
(2004)
Phys. Med. Biol.
, vol.49
-
-
Cherry, S.R.1
-
7
-
-
72149095748
-
Cerenkov radiation imaging as a method for quantitative measurements of beta particles in a microfluidic chip
-
Cho J, Taschereau R, Olma S, Liu K, Chen Y, Shen C, van Dam R and Chatziioannou A 2009 Cerenkov radiation imaging as a method for quantitative measurements of beta particles in a microfluidic chip Phys. Med. Biol. 54 6757-71
-
(2009)
Phys. Med. Biol.
, vol.54
, pp. 6757-6771
-
-
Cho, J.1
Taschereau, R.2
Olma, S.3
Liu, K.4
Chen, Y.5
Shen, C.6
Van Dam, R.7
Chatziioannou, A.8
-
8
-
-
67649090543
-
Light transport in biological tissue using three-dimensional frequency-domain simplified spherical harmonics equations
-
Chu M, Vishwanath K, Klose A D and Dehghani H 2009 Light transport in biological tissue using three-dimensional frequency-domain simplified spherical harmonics equations Phys. Med. Biol. 54 2493-509
-
(2009)
Phys. Med. Biol.
, vol.54
, pp. 2493-2509
-
-
Chu, M.1
Vishwanath, K.2
Klose, A.D.3
Dehghani, H.4
-
9
-
-
38449103047
-
Flux vector formulation for photon propagation in the biological tissue
-
Cong W, Cong A, Shen H, Liu Y and Wang G 2007 Flux vector formulation for photon propagation in the biological tissue Opt. Lett. 32 2837-9
-
(2007)
Opt. Lett.
, vol.32
, pp. 2837-2839
-
-
Cong, W.1
Cong, A.2
Shen, H.3
Liu, Y.4
Wang, G.5
-
10
-
-
24944438742
-
Practical reconstruction method for bioluminescence tomography
-
Cong W et al 2005 Practical reconstruction method for bioluminescence tomography Opt. Express 13 6756-71
-
(2005)
Opt. Express
, vol.13
, pp. 6756-6771
-
-
Cong, W.1
-
11
-
-
0036405345
-
Advances in bioluminescence imaging of gene expression
-
Contag C H and Bachmann M H 2002 Advances in bioluminescence imaging of gene expression Annu. Rev. Biomed. Eng. 4 235-60
-
(2002)
Annu. Rev. Biomed. Eng.
, vol.4
, pp. 235-260
-
-
Contag, C.H.1
Bachmann, M.H.2
-
12
-
-
33645062427
-
Spectrally resolved bioluminescence optical tomography
-
Dehghani H, Davis S C, Jiang S, Pogue BW, Paulsen K D and Patterson MS 2006 Spectrally resolved bioluminescence optical tomography Opt. Lett. 31 365-7
-
(2006)
Opt. Lett.
, vol.31
, pp. 365-367
-
-
Dehghani, H.1
Davis, S.C.2
Jiang, S.3
Pogue, B.W.4
Paulsen, K.D.5
Patterson, M.S.6
-
14
-
-
0038497943
-
Fluoresce-nceenhanced optical imaging in large tissue volumes using a gain-modulated ICCD camera
-
Godavarty A, Eppstein M, Zhang C, Theru S, Thompson A, Gurfinkel M and Sevick-Muraca E 2003 Fluoresce-nceenhanced optical imaging in large tissue volumes using a gain-modulated ICCD camera Phys. Med. Biol. 48 1701-20
-
(2003)
Phys. Med. Biol.
, vol.48
, pp. 1701-1720
-
-
Godavarty, A.1
Eppstein, M.2
Zhang, C.3
Theru, S.4
Thompson, A.5
Gurfinkel, M.6
Sevick-Muraca, E.7
-
15
-
-
2942744774
-
Diagnostic imaging of breast cancer using fluorescence-enhanced optical tomography: Phantom studies
-
Godavarty A, Thompson A, Roy R, Gurfinkel M, Eppstein M, Zhang C and Sevick-Muraca E 2004 Diagnostic imaging of breast cancer using fluorescence-enhanced optical tomography: phantom studies J. Biomed. Opt. 9 488
-
(2004)
J. Biomed. Opt.
, vol.9
, pp. 488
-
-
Godavarty, A.1
Thompson, A.2
Roy, R.3
Gurfinkel, M.4
Eppstein, M.5
Zhang, C.6
Sevick-Muraca, E.7
-
16
-
-
65349194394
-
Aparallel reduced-space sequential-quadratic programming algorithm for frequency-domain small animal optical tomography
-
Gu X, Kim H, Masciotti J and Hielscher A 2009 Aparallel reduced-space sequential-quadratic programming algorithm for frequency-domain small animal optical tomography Proc. SPIE 7174 717406
-
(2009)
Proc. SPIE
, vol.7174
, pp. 717406
-
-
Gu, X.1
Kim, H.2
Masciotti, J.3
Hielscher, A.4
-
17
-
-
0028519703
-
Boundary conditions for the diffusion equation in radiative transfer
-
Haskell R C, Svaasand L O, Tsay T-T, Feng T-C, McAdams M S and Tromberg B J 1994 Boundary conditions for the diffusion equation in radiative transfer J. Opt. Soc. Am. A 11 2727
-
(1994)
J. Opt. Soc. Am. A
, vol.11
, pp. 2727
-
-
Haskell, R.C.1
Svaasand, L.O.2
Tsay, T.-T.3
Feng, T.-C.4
McAdams, M.S.5
Tromberg, B.J.6
-
18
-
-
0142209343
-
Molecular imaging: Looking at problems, seeing solutions
-
Herschman H R 2003 Molecular imaging: looking at problems, seeing solutions Science 302 605-8
-
(2003)
Science
, vol.302
, pp. 605-608
-
-
Herschman, H.R.1
-
21
-
-
10444280899
-
Adaptive finite element based tomography for fluorescence optical imaging in tissue
-
Joshi A, Bangerth W and Sevick-Muraca E M 2004 Adaptive finite element based tomography for fluorescence optical imaging in tissue Opt. Express 12 5402-17
-
(2004)
Opt. Express
, vol.12
, pp. 5402-5417
-
-
Joshi, A.1
Bangerth, W.2
Sevick-Muraca, E.M.3
-
22
-
-
33745814422
-
Non-contact fluorescence optical tomography with scanning patterned illumination
-
DOI 10.1364/OE.14.006516
-
Joshi A, Bangerth W and Sevick-Muraca E M 2006 Non-contact fluorescence optical tomography with scanning patterned illumination Opt. Express 14 6516-34 (Pubitemid 44036385)
-
(2006)
Optics Express
, vol.14
, Issue.14
, pp. 6516-6534
-
-
Joshi, A.1
Bangerth, W.2
Sevick-Muraca, E.M.3
-
23
-
-
42649103988
-
Radiative transport-based frequency-domain fluorescence tomography
-
Joshi A, Rasmussen J, Sevick-Muraca E, Wareing T and McGhee J 2008 Radiative transport-based frequency-domain fluorescence tomography Phys. Med. Biol. 53 2069-88
-
(2008)
Phys. Med. Biol.
, vol.53
, pp. 2069-2088
-
-
Joshi, A.1
Rasmussen, J.2
Sevick-Muraca, E.3
Wareing, T.4
McGhee, J.5
-
24
-
-
0002806618
-
Multilevel k-way partitioning scheme for irregular graphs
-
Karypis G and Kumar V 1998 Multilevel k-way partitioning scheme for irregular graphs J. Parallel Distrib. Comput. 48 96-129
-
(1998)
J. Parallel Distrib. Comput.
, vol.48
, pp. 96-129
-
-
Karypis, G.1
Kumar, V.2
-
25
-
-
0020848572
-
A posteriori error analysis and adaptive processes in the finite element method: Part i. Error analysis
-
Kelly D W, R. Gago J P D S, Zienkiewicz O C and Babuska I 1983 A posteriori error analysis and adaptive processes in the finite element method: part i. Error analysis Int. J. Numer. Methods Eng. 19 1593-619
-
(1983)
Int. J. Numer. Methods Eng.
, vol.19
, pp. 1593-1619
-
-
Kelly, D.W.1
R. Gago, J.P.D.S.2
Zienkiewicz, O.C.3
Babuska, I.4
-
26
-
-
43149123393
-
LibMesh: A C++ library for parallel adaptive mesh refinement/coarsening simulations
-
Kirk B, Peterson J W, Stogner R H and Carey G F 2006 libMesh: a C++ library for parallel adaptive mesh refinement/coarsening simulations Eng. Comput. 22 237-54
-
(2006)
Eng. Comput.
, vol.22
, pp. 237-254
-
-
Kirk, B.1
Peterson, J.W.2
Stogner, R.H.3
Carey, G.F.4
-
29
-
-
33751009099
-
Light transport in biological tissue based on the simplified spherical harmonics equations
-
Klose A D and Larsen E W 2006 Light transport in biological tissue based on the simplified spherical harmonics equations J. Comput. Phys. 220 441-70
-
(2006)
J. Comput. Phys.
, vol.220
, pp. 441-470
-
-
Klose, A.D.1
Larsen, E.W.2
-
30
-
-
8744226110
-
The inverse source problem based on the radiative transfer equation in optical molecular imaging
-
Klose A D, Ntziachristos V and Hielscher A H 2005 The inverse source problem based on the radiative transfer equation in optical molecular imaging J. Comput. Phys. 202 323-45
-
(2005)
J. Comput. Phys.
, vol.202
, pp. 323-345
-
-
Klose, A.D.1
Ntziachristos, V.2
Hielscher, A.H.3
-
31
-
-
34250686930
-
Three-dimensional reconstruction of in vivo bioluminescent sources based on multispectral imaging
-
Kuo C, Coquoz O, Troy T L, Xu H and Rice B W 2007 Three-dimensional reconstruction of in vivo bioluminescent sources based on multispectral imaging J. Biomed. Opt. 12 024007
-
(2007)
J. Biomed. Opt.
, vol.12
, pp. 024007
-
-
Kuo, C.1
Coquoz, O.2
Troy, T.L.3
Xu, H.4
Rice, B.W.5
-
32
-
-
42649093536
-
Fast intersections on nested tetrahedrons (FINT): An algorithm for adaptive finite element based distributed parameter estimation
-
Lee J, Joshi A and Sevick-Muraca E 2008 Fast intersections on nested tetrahedrons (FINT): an algorithm for adaptive finite element based distributed parameter estimation J. Comput. Phys. 227 5778-98
-
(2008)
J. Comput. Phys.
, vol.227
, pp. 5778-5798
-
-
Lee, J.1
Joshi, A.2
Sevick-Muraca, E.3
-
34
-
-
0001737480
-
Fluorescent heterogeneities in turbid media: Limits for detection, characterization, and comparison with absorption
-
Li X, Chance B and Yodh A 1998 Fluorescent heterogeneities in turbid media: limits for detection, characterization, and comparison with absorption Appl. Opt. 37 6833-44
-
(1998)
Appl. Opt.
, vol.37
, pp. 6833-6844
-
-
Li, X.1
Chance, B.2
Yodh, A.3
-
35
-
-
68749102216
-
A parallel adaptive finite element method for the simulation of photon migration with the radiative-transfer-based model
-
Lu Y and Chatziioannou A 2009 A parallel adaptive finite element method for the simulation of photon migration with the radiative-transfer-based model Commun. Numer. Methods Eng. 25 751-770
-
(2009)
Commun. Numer. Methods Eng.
, vol.25
, pp. 751-770
-
-
Lu, Y.1
Chatziioannou, A.2
-
36
-
-
70449116190
-
Spectrally resolved bioluminescence tomography with the third-order simplified spherical harmonics approximation
-
Lu Y, Douraghy A, Machado H, Stout D, Tian J, Herschman H and Chatziioannou A 2009a Spectrally resolved bioluminescence tomography with the third-order simplified spherical harmonics approximation Phys. Med. Biol. 54 6477-93
-
(2009)
Phys. Med. Biol.
, vol.54
, pp. 6477-6493
-
-
Lu, Y.1
Douraghy, A.2
Machado, H.3
Stout, D.4
Tian, J.5
Herschman, H.6
Chatziioannou, A.7
-
37
-
-
70349199577
-
Experimental bioluminescence tomography with fully parallel radiative-transfer-based reconstruction framework
-
Lu Y, Machado H B, Douraghy A, Stout D, Herschman H and Chatziioannou A F 2009b Experimental bioluminescence tomography with fully parallel radiative-transfer-based reconstruction framework Opt. Express 17 16681-95
-
(2009)
Opt. Express
, vol.17
, pp. 16681-16695
-
-
Lu, Y.1
Machado, H.B.2
Douraghy, A.3
Stout, D.4
Herschman, H.5
Chatziioannou, A.F.6
-
38
-
-
33748300543
-
A multilevel adaptive finite element algorithm for bioluminescence tomography
-
Lv Y, Tian J, Cong W, Wang G, Luo J, Yang W and Li H 2006 A multilevel adaptive finite element algorithm for bioluminescence tomography Opt. Express 14 8211-23
-
(2006)
Opt. Express
, vol.14
, pp. 8211-8223
-
-
Lv, Y.1
Tian, J.2
Cong, W.3
Wang, G.4
Luo, J.5
Yang, W.6
Li, H.7
-
39
-
-
0037338436
-
Molecular imaging in living subjects: Seeing fundamental biological processes in a new light
-
Massoud T F and Gambhir S S 2003 Molecular imaging in living subjects: seeing fundamental biological processes in a new light Genes Dev. 17 545-80
-
(2003)
Genes Dev.
, vol.17
, pp. 545-580
-
-
Massoud, T.F.1
Gambhir, S.S.2
-
40
-
-
34147158766
-
Monte Carlo simulation of time-dependent, transport-limited fluorescent boundary measurements in frequency domain
-
Pan T, Rasmussen J, Lee J and Sevick-Muraca E 2007 Monte Carlo simulation of time-dependent, transport-limited fluorescent boundary measurements in frequency domain Med. Phys. 34 1298
-
(2007)
Med. Phys.
, vol.34
, pp. 1298
-
-
Pan, T.1
Rasmussen, J.2
Lee, J.3
Sevick-Muraca, E.4
-
41
-
-
21244482138
-
Time-dependent whole-body fluorescence tomography of probe bio-distributions in mice
-
Patwardhan S, Bloch S, Achilefu S and Culver J 2005 Time-dependent whole-body fluorescence tomography of probe bio-distributions in mice Opt. Express 13 2564-77
-
(2005)
Opt. Express
, vol.13
, pp. 2564-2577
-
-
Patwardhan, S.1
Bloch, S.2
Achilefu, S.3
Culver, J.4
-
43
-
-
33845293257
-
Radiative transport in fluoresce-nceenhanced frequency domain photon migration
-
Rasmussen J, Joshi A, Pan T, Wareing T, McGhee J and Sevick-Muraca E 2006 Radiative transport in fluoresce-nceenhanced frequency domain photon migration Med. Phys. 33 4685
-
(2006)
Med. Phys.
, vol.33
, pp. 4685
-
-
Rasmussen, J.1
Joshi, A.2
Pan, T.3
Wareing, T.4
McGhee, J.5
Sevick-Muraca, E.6
-
44
-
-
65449147591
-
Lymphatic imaging in humans with near-infrared fluorescence
-
Rasmussen J, Tan I, Marshall M, Fife C and Sevick-Muraca E 2009 Lymphatic imaging in humans with near-infrared fluorescence Curr. Opin. Biotechnol. 20 74-82
-
(2009)
Curr. Opin. Biotechnol.
, vol.20
, pp. 74-82
-
-
Rasmussen, J.1
Tan, I.2
Marshall, M.3
Fife, C.4
Sevick-Muraca, E.5
-
45
-
-
70349784211
-
Optical imaging of Cerenkov light generation from positron-emitting radiotracers
-
Robertson R, Germanos M, Li C, Mitchell G, Cherry S and Silva M 2009 Optical imaging of Cerenkov light generation from positron-emitting radiotracers Phys. Med. Biol. 54 N355-65
-
(2009)
Phys. Med. Biol.
, vol.54
-
-
Robertson, R.1
Germanos, M.2
Li, C.3
Mitchell, G.4
Cherry, S.5
Silva, M.6
-
46
-
-
3042517414
-
Generating random points in a tetrahedron
-
Rocchini C and Cignoni P 2000 Generating random points in a tetrahedron J. Graph. Tools 5 9-12
-
(2000)
J. Graph. Tools
, vol.5
, pp. 9-12
-
-
Rocchini, C.1
Cignoni, P.2
-
47
-
-
2942654916
-
Development of a 4D digital mouse phantom for molecular imaging research
-
Segars W P, Tsui B M W, Frey E C, Johnson G A and Berr S S 2004 Development of a 4D digital mouse phantom for molecular imaging research Mol. Imaging Biol. 6 149-59
-
(2004)
Mol. Imaging Biol.
, vol.6
, pp. 149-159
-
-
Segars, W.P.1
Tsui, B.M.W.2
Frey, E.C.3
Johnson, G.A.4
Berr, S.S.5
-
48
-
-
0036802915
-
Fluorescence-enhanced, near infrared diagnostic imaging with contrast agents
-
Sevick-Muraca E, Houston J and Gurfinkel M 2002 Fluorescence-enhanced, near infrared diagnostic imaging with contrast agents Curr. Opin. Chem. Biol. 6 642-50
-
(2002)
Curr. Opin. Chem. Biol.
, vol.6
, pp. 642-650
-
-
Sevick-Muraca, E.1
Houston, J.2
Gurfinkel, M.3
-
49
-
-
0031183895
-
Fluorescence and absorption contrast mechanisms for biomedical optical imaging using frequency-domain techniques
-
Sevick-Muraca E, Lopez G, Reynolds J, Troy T and Hutchinson C 1997 Fluorescence and absorption contrast mechanisms for biomedical optical imaging using frequency-domain techniques Photochem. Photobiol. 66 55
-
(1997)
Photochem. Photobiol.
, vol.66
, pp. 55
-
-
Sevick-Muraca, E.1
Lopez, G.2
Reynolds, J.3
Troy, T.4
Hutchinson, C.5
-
50
-
-
40949113163
-
Imaging of lymph flow in breast cancer patients after microdose administration of a near-infrared fluorophore: Feasibility study
-
Sevick-Muraca E et al 2008 Imaging of lymph flow in breast cancer patients after microdose administration of a near-infrared fluorophore: feasibility study Radiology 246 734
-
(2008)
Radiology
, vol.246
, pp. 734
-
-
Sevick-Muraca, E.1
-
51
-
-
76149133146
-
A tetrahedron-based inhomogeneous Monte Carlo optical simulator
-
Shen H and Wang G 2010 A tetrahedron-based inhomogeneous Monte Carlo optical simulator Phys. Med. Biol. 55 947-62
-
(2010)
Phys. Med. Biol.
, vol.55
, pp. 947-962
-
-
Shen, H.1
Wang, G.2
-
52
-
-
65649113981
-
Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome
-
Shu X, Royant A, Lin M, Aguilera T, Lev-Ram V, Steinbach P and Tsien R 2009 Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome Science 324 804
-
(2009)
Science
, vol.324
, pp. 804
-
-
Shu, X.1
Royant, A.2
Lin, M.3
Aguilera, T.4
Lev-Ram, V.5
Steinbach, P.6
Tsien, R.7
-
54
-
-
0037208326
-
Near-infrared fluorescence contrast-enhanced imaging with intensified charge-coupled device homodyne detection: Measurement precision and accuracy
-
Thompson A and Sevick-Muraca E 2003 Near-infrared fluorescence contrast-enhanced imaging with intensified charge-coupled device homodyne detection: measurement precision and accuracy J. Biomed. Opt. 8 111
-
(2003)
J. Biomed. Opt.
, vol.8
, pp. 111
-
-
Thompson, A.1
Sevick-Muraca, E.2
-
55
-
-
84944039753
-
Generating random points in triangles
-
New York: Academic
-
Turk G 1990 Generating random points in triangles Graphics Gems (New York: Academic) p 28
-
(1990)
Graphics Gems
, pp. 28
-
-
Turk, G.1
-
56
-
-
4043105065
-
Uniqueness theorems in bioluminescence tomography
-
Wang G, Li Y and Jiang M 2004 Uniqueness theorems in bioluminescence tomography Med. Phys. 31 2289-99
-
(2004)
Med. Phys.
, vol.31
, pp. 2289-2299
-
-
Wang, G.1
Li, Y.2
Jiang, M.3
-
57
-
-
0029045693
-
Monte Carlo modeling of photon transport in multi-layered tissues
-
Wang L, Jacques S L and Zheng L 1995. Monte Carlo modeling of photon transport in multi-layered tissues Comput. Methods Prog. Biomed. 47 131-46
-
(1995)
Comput. Methods Prog. Biomed.
, vol.47
, pp. 131-146
-
-
Wang, L.1
Jacques, S.L.2
Zheng, L.3
-
58
-
-
0032879583
-
Molecular imaging: Exploring the next frontier
-
Weissleder R 1999 Molecular imaging: exploring the next frontier Radiology 212 609-14
-
(1999)
Radiology
, vol.212
, pp. 609-614
-
-
Weissleder, R.1
-
59
-
-
58149250378
-
A higher order diffusion model for three-dimensional photon migration
-
Yuan Z, Hu X and Jiang H 2009 A higher order diffusion model for three-dimensional photon migration Phys. Med. Biol. 54 65-88
-
(2009)
Phys. Med. Biol.
, vol.54
, pp. 65-88
-
-
Yuan, Z.1
Hu, X.2
Jiang, H.3
|