Using triplex-forming oligonucleotide probes for the reagentless, electrochemical detection of double-stranded DNA

Analytical Chemistry

Volumn 82, Issue 21, 2010, Pages 9109-9115

  Patterson, Adriana ^a   Caprio, Felice ^b   Vallée Bélisle, Alexis ^a   Moscone, Danila ^b   Plaxco, Kevin W ^a   Palleschi, Giuseppe ^b   Ricci, Francesco ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF ROME TOR VERGATA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

AMPLICONS; BLOOD SERUM; COMPLEX SAMPLES; DOUBLE STRANDED DNA; ELECTROCHEMICAL DETECTION; GOLD ELECTRODES; HOOGSTEEN BASE PAIRING; POLYPYRIMIDINE; PROOF OF PRINCIPLES; REAGENT-LESS; REAL-WORLD; RECOGNITION ELEMENT; REDOX MOIETIES; SENSOR PLATFORM; TRIPLEX-FORMING OLIGONUCLEOTIDES;

CHEMICAL DETECTION; CHEMISORPTION; DNA; ELECTROCHEMICAL SENSORS; OLIGONUCLEOTIDES; PROBES; SENSORS;

POLYMERASE CHAIN REACTION;

DNA; PURINE DERIVATIVE; PYRIMIDINE DERIVATIVE; RNA;

ARTICLE; CHEMISTRY; ELECTROCHEMICAL ANALYSIS; GENETICS; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; METHODOLOGY; NUCLEOTIDE SEQUENCE; OLIGONUCLEOTIDE PROBE; POLYMERASE CHAIN REACTION; VIROLOGY;

BASE SEQUENCE; DNA; ELECTROCHEMICAL TECHNIQUES; HIV INFECTIONS; HIV-1; HUMANS; OLIGONUCLEOTIDE PROBES; POLYMERASE CHAIN REACTION; PURINES; PYRIMIDINES; RNA;

EID: 78049516981     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac1024528     Document Type: Article

References (46)

1. Persil, O. and Hud, N. V. Trends Biotechnol. 2007, 25 (10) 433-436
2. Fang, T. H., Ramalingam, N., Xian-Dui, D., Ngin, T. S., Xianting, Z., Kuan, A. T. L., Huat, E. Y. P., and Hai-Qing, Gong. Biosens. Bioelectron. 2009, 24 (7) 2131-2136
3. Ihmels, H. and Otto, D. Top. Curr. Chem. 2005, 258, 161-204
4. Markoulatos, P., Saifakas, N., and Moncany, M. J. Clin. Lab. Anal. 2002, 16 (1) 47-51
5. Ghosh, I., Stains, C. I., Ooi, A. T., and Segal, D. J. Mol. Biosyst. 2006, 2 (11) 551-560
6. White, S., Szewczyk, J. W., Turner, J. M., Baird, E. E., and Dervan, P. B. Nature 1998, 391, 468-471
7. Ooi, A. T., Stains, C. I., Ghosh, I., and Segal, D. J. Biochemistry 2006, 45, 3620-3625
8. Stains, C. I., Furman, J. L., Segal, D. J., and Ghosh, I. J. Am. Chem. Soc. 2006, 128, 9761-9765
9. Stains, C. I., Porter, J. R., Ooi, A. T., Segal, D. J., and Ghosh, I. J. Am. Chem. Soc. 2005, 127, 10782-10783
10. Paleček, E., Masařiḱ, M., Kizek, R., Kuhlmeier, D., Hassmann, J., and Schülein, J. Anal. Chem. 2004, 76 (19) 5930-5936
11. Halby, L., Ryabinin, V. A., Sinyakov, A. N., and Boutorine, A. S. Bioorg. Med. Chem. Lett. 2005, 15, 3720-3724
12. Buchmann, W., Boutorine, A., Halby, L., Tortajada, J., and De Pauw, E. J. Mass Spectrom. 2009, 44 (8) 1171-81
13. Thuong, T. N. and Hélène, C. Angew. Chem., Int. Ed. Engl. 1993, 32, 666-690
14. Helene, C. Anti-Cancer Drug Des. 1991, 6 (6) 569-584
15. Helene, C. and Toulme, J.-J. Biochim. Biophys. Acta Gene Struct. Expression 1990, 1049 (2) 99-125
16. Dervan, P. B. Bioorg. Med. Chem. 2001, 9, 2215-2235
17. Johnson, M. D. Chromosoma 1999, 108, 181-189
18. Escude, C., Garestier, T., and Helene, C. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 10603-10607
19. Geron-Landre, B., Roulon, T., Desbiolles, P., and Escude, C. Nucleic Acids Res. 2003, 31 e125
20. Geron-Landre, B., Roulon, T., and Escude, C. FEBS J. 2005, 272, 5343-5352
21. Xiao, Y., Lai, R. Y., and Plaxco, K. W. Nature Prot. 2007, 2, 2875-2880
22. Ricci, F. and Plaxco, K. W. Mikrochim. Acta 2008, 163 (3-4) 149-155
23. Lubin, A. A. and Plaxco, K. W. Acc. Chem. Res. 2010, 43 (4) 496-505
24. Lai, R. Y., Lagally, E. T., Lee, S.-H., Soh, H. T., Plaxco, K. W., and Heeger, A. J. Proc. Natl. Acad. Sci. U.S.A. 2006, 103 (11) 4017-4021
25. Pavlovic, E., Lai, R. Y., Wu, T. T., Ferguson, B. S., Sun, R., and Plaxco, K. W. Langmuir 2008, 24, 1102-1107
26. Ricci, F., Zari, N., Caprio, F., Recine, S., Amine, A., and Moscone, D. Bioelectrochem. 2009, 76 (1-2) 208-213
27. Ricci, F., Lai, R. Y., Heeger, A. J., Plaxco, K. W., and Sumner, J. J. Langmuir 2007, 23 (12) 6827-6834
28. Ricci, F., Lai, R. Y., and Plaxco, K. W. Chem. Commun. 2007, 36, 3768-3770
29. Xiao, Y., Lubin, A. A., Baker, B. R., Plaxco, K. W., and Heeger, A. J. Proc. Natl. Acad. Sci. U.S.A. 2006, 103 (45) 16677-16680
30. Shafer, R. H. Prog. Nucleic Acid Res. Mol. Biol. 1998, 59, 55-94
31. Antony, T., Thomas, T., Sigal, L. H., Shirahata, A., and Thomas, T. J. Biochemistry 2001, 40 (31) 9387-9395
32. Giovannangeli, C., Perrouault, L., Escude, C., Thuong, N., and Helene, C. Biochemistry 1996, 35, 10539-10548
33. Malkov, V. A., Voloshin, O. N., Soyfer, V. N., and Frank-Kamenetskii, M. D. Nucleic Acids Res. 1993, 21, 585-591
34. Immoos, C. E., Lee, S. J., and Grinstaff, M. W. Chem. Bio. Chem. 2004, 5, 1100-1104
35. Immoos, C. E., Lee, S. J., and Grinstaff, M. W. J. Am. Chem. Soc. 2004, 126, 10814-10815
36. Mao, T., Luo, C., and Ouyang, Q. Nucleic Acids Res. 2003, 31, 108-172
37. Phares, N., White, R. J., and Plaxco, K. W. Anal. Chem. 2009, 81, 1095-1100
38. Lubin, A. A., Vander Stoep Hunt, B., White, R. J., and Plaxco, K. W. Anal. Chem. 2009, 81, 2150-2158
39. Paleček, E. Trends Biotechnol. 2004, 22 (2) 55-58
40. Thorp, H. H. Trends Biotechnol. 2003, 21, 522-524
41. Goñi, J. R., de la Cruz, X., and Orozco, M. Nucleic Acids Res. 2004, 32 (1) 354-360
42. Duca, M., Vekhoff, P., Oussedik, K., Halby, L., and Arimondo, P. B. Nucleic Acids Res. 2008, 36 (16) 5123-5138
43. Cai, X., Rivas, G., Shirashi, H., Farias, P., Wang, J., Tomschik, M., Jelen, F., and Palecek, E. Anal. Chim. Acta 1997, 344, 65-76
44. Ihara, T., Maruo, Y., Takenaka, S., and Takagi, M. Nucleic Acids Res. 1996, 24, 4273-4280
45. Drummond, T. G., Hill, M. G., and Barton, J. K. Nat. Biotechnol. 2003, 21, 1192-1199
46. Giovannangeli, C., Diviacco, S., Labrousse, V., Gryaznov, S., Charneau, P., and Helene, C. Proc. Natl. Acad. Sci. U.S.A. 1997, 94 (1) 79-84