Functional mapping of quantitative trait loci associated with rice tillering

Molecular Genetics and Genomics

Volumn 284, Issue 4, 2010, Pages 263-271

  Liu, G F ^a   Li, M ^b   Wen, J ^b   Du, Y ^b   Zhang, Y M ^b  

^a SOUTH CHINA AGRICULTURAL UNIVERSITY   (China)

^b NANJING AGRICULTURAL UNIVERSITY   (China)

Author keywords

Functional mapping; Nonlinear regression model; Penalized maximum likelihood; Quantitative trait locus; Rice tillering

Indexed keywords

ARTICLE; DEVELOPMENTAL STAGE; DOUBLED HAPLOID LINE; GENETIC EPISTASIS; NONHUMAN; PHENOTYPIC VARIATION; PLANT DEVELOPMENT; PLANT GENETICS; PLANT GROWTH; PRIORITY JOURNAL; QUANTITATIVE TRAIT LOCUS MAPPING; RICE; AGRICULTURE; BIOLOGICAL MODEL; CHROMOSOME MAP; GENETIC LINKAGE; GENETICS; GROWTH, DEVELOPMENT AND AGING; HAPLOIDY; METHODOLOGY; QUANTITATIVE TRAIT LOCUS; THEORETICAL MODEL;

AGRICULTURE; CHROMOSOME MAPPING; HAPLOIDY; LOD SCORE; MODELS, GENETIC; MODELS, THEORETICAL; ORYZA SATIVA; QUANTITATIVE TRAIT LOCI;

EID: 78049438930     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-010-0566-z     Document Type: Article

References (45)

1. Ahmad L, Zakri AH, Jalani BS, Omar D (1986) Detection of additive and non-additive variation in rice. In: Rice genetics. IRRI, Manila, Philippines, pp 555-564
2. Bradshaw HD, Settler RF (1995) Molecular genetics of growth and development in populus. IV. Mapping QTLs with large effects on growth, form, and phenology traits in a forest tree. Genetics 139:963-973
3. Cui YH, Zhu J, Wu RL (2006) Functional mapping for genetic control of programmed cell death. Physiol Genom 25:458-469
4. Cui YH, Wu RL, Casella G, Zhu J (2008) Nonparametric functional mapping quantitative trait loci underlying programmed cell death. Stat Appl Genet Mol Biol 7(1), Article 4
5. Dong YJ, Kamiunten HS, Ogawa TF, Tsuzuki EJ, Terao HY, Lin DZ, Matsuo MH (2004) Mapping of QTLs for leaf developmental behavior in rice (Oryza sativa L.). Euphytica 138:169-175
6. Dou BD, Hou BW, Wang F, Yang JB, Ni ZF, Sun QX, Zhang YM (2001) Further mapping of quantitative trait loci for female sterility in wheat (Triticum aestivum L.). Genet Res 92:63-70
7. Gai JY, Zhang Y-M, Wang JK (2003) Genetic system of quantitative traits in plants. Science Press, Beijing
8. Gauch HG (1992) Model selection and validation for yield trials with interaction. Biometrics 44:705-712
9. Hittalmani S, Huang N, Courtois B, Venuprasad R, Shashidhar HE, Zhuang J-Y, Zheng K-L, Liu G-F, Wang G-C, Sidhu JS, Srivantaneeyakul S, Singh VP, Bagali PG, Prasanna HC, McLaren G, Khush GS (2003) Identification of QTL for growth-and grain yield-related traits in rice across nine locations of Asia. Theor Appl Genet 107:679-690
10. Huang N, McCouch S, Mew T, Parco A, Guiderdoni E (1994) Development of an RFLP map from a double haploid population in rice. Rice Genet Newslett 11:134-137
11. Iwata N, Takamure I, Wu HK, Siddig EA, Rutger JN (1995) List of genes for various traits (with chromosome and main literature). Rice Genet Newslett 12:61-93
12. Jansen RC (1993) Interval mapping of multiple quantitative trait loci. Genetics 135:205-211
13. Jiang GH, Xu CG, Li XH, He YQ (2004) Characterization of the genetic basis for yield and its component traits of rice revealed by doubled haploid population. Acta Genet Sin 31:63-72
14. Kao C-H, Zeng Z-B, Teasdale RD (1999) Multiple interval mapping for quantitative trait loci. Genetics 152:1203-1216
15. Li CC (1977) Diallel analysis of yield and its component traits in rice (Oryza sativa L.). Plant Breed Abstr 47:45
16. Li Z, Pinson SRM, Park WD, Paterson AH, Stansel JW (1997) Epistasis for three grain yield components in rice (Oryza sativa L.). Genetics 145:453-465
17. Li X, Qian Q, Fu Z, Wang Y, Xiong G, Zeng D, Wang X, Liu X, Teng S, Hiroshi F, Yuan M, Luo D, Han B, Li J (2003) Control of tillering in rice. Nature 422:618-621
18. Lin HX, Qian HR, Zhuang JY, Lu J, Min SK, Xiong ZM, Huang N, Zheng KL (1996) RFLP mapping of QTLs for yield and related characters in rice (Oryza sativa L.). Theor Appl Genet 92:920-927
19. Liu GF, Xu HM, Yang J, Zhu J (2006) Genetic analysis on tiller number and plant height per plant in rice (Oryza sativa L.). J Zhejiang Univ (Agric and Life Sci) 32:527-534
20. Liu G, Zeng R, Zhu H, Zhang Z, Ding X, Zhao F, Li W, Zhang G (2009) Dynamic expression of nine QTLs for tiller number detected with single segment substitution lines in rice. Theor Appl Genet 118:443-453
21. Ma C-X, Casella G, Wu R (2002) Functional mapping of quantitative trait loci underlying the character process: A theoretical framework. Genetics 161:1751-1762
22. McCouch SR, Cho YG, Yano M, Paul E, Blinstrub M, Morishima H, Kinoshita T (1997) Report on QTL nomenclature. Rice Genet Newslett 14:11-13
23. Murai M, Kinoshita T (1986) Diallel analysis of traits concerning yield in rice. Jpn J Breed 36:7-15
24. Perera ALT, Senadhira D, Lawrence MJ (1986) Genetic architecture of economically important characters and prediction of performance of recombinant inbred lines in rice. In: Rice genetics. IRRI, Manila, Philippines, pp 565-578
25. Plomion C, Durel CE, O'Malley DM (1996) Genetic dissection of height in maritime pine seedlings raised under accelerated growth conditions. Theor Appl Genet 93:849-858
26. Price AH, Tomos AD (1997) Genetic dissection of root growth in rice (Oryza sativa L.): II. Mapping quantitative trait loci using molecular markers. Theor Appl Genet 95:143-152
27. Sen S, Churchill GA (2001) A statistical framework for quantitative trait mapping. Genetics 159:371-387
28. Tanksley SD (1993) Mapping polygenes. Annu Rev Genet 27:205-233
29. Voorrips RE (2002) MapChart: Software for the graphical presentation of linkage maps and QTLs. J Hered 93:77-78
30. Wang RS, Lan ZX, Ding YC (1982) Studies on mathematical models of the relationship between insect development and temperature. Acta Ecol Sin 2(1):47-57
31. Wang S, Basten CJ, Zeng ZB (2007) Windows QTL Cartographer 2.5. Department of Statistics, North Carolina State University, Raleigh (http://statgen.ncsu.edu/qtlcart/WQTLCart.htm)
32. Wu RL, Lin M (2006) Functional mapping-how to map and study the genetic architecture of dynamic complex traits. Nat Rev Genet 7:229-237
33. Wu P, Zhang G, Huang N (1996) Identification of QTLs controlling quantitative characters in rice using RFLP markers. Euphytica 89:349-354
34. Wu WR, Li WM, Tang DZ, Lu HR, Worland AJ (1999) Time-related mapping of quantitative trait loci underlying tiller number in rice. Genetics 151:297-303
35. Xiao J, Li J, Yuan L, Tanksley SD (1995a) Dominance is the major genetic basis of heterosis in rice as revealed by QTL analysis using molecular markers. Genetics 140:745-754
36. Xiao J, Li J, Yuan L, Tanksley SD (1995b) Identification of QTLs affecting traits of agronomic importance in a recombinant inbred population derived from a subspecific rice cross. Theor Appl Genet 92:230-244
37. Xiong ZM (1992) Research outline on rice genetics in China. China Agricultural Press, Beijing
38. Xu S, Jia Z (2007) Genomewide analysis of epistatic effects for quantitative traits in barley. Genetics 175:1955-1963
39. Xu YB, Shen ZT (1991) Diallel analysis of tiller number at different growth stages in rice (Oryza sativa L.). Theor Appl Genet 83:243-249
40. Yan JQ, Zhu J, He C, Benmoussa M, Wu P (1998) Quantitative trait loci analysis for the developmental behavior of tiller number in rice (Oryza sativa L.). Theor Appl Genet 97:267-274
41. Zeng Z-B (1993) Theoretical basis for separation of multiple linked gene effects in mapping of quantitative trait loci. PNAS 90:10972-10976
42. Zhang YM, Tian YQ (1995) A study on the mathematical model of egg laying in Sichuan white geese. J Southwest Agric Univ 17(6):550-552
43. Zhang YM, Xu S (2005) A penalized maximum likelihood method for estimating epistatic effects of QTL. Heredity 95:96-104
44. Zhu J (1995) Analysis of conditional genetic effects and variance components in developmental genetics. Genetics 141:1633-1639
45. Zou JH, Zhang SY, Zhang WP, Li G, Chen ZX, Zhai WX, Zhao XF, Pan XB, Xie Q, Zhu LH (2006) The rice high-tillering dwarf 1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds. Plant J 48:687-696