Structural divergence and functional versatility of the rhodopsin superfamily

Photochemical and Photobiological Sciences

Volumn 9, Issue 11, 2010, Pages 1458-1465

  Kouyama, Tsutomu ^a   Murakami, Midori ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ALGAE; ANIMALIA; ARCHAEA; BACTERIA (MICROORGANISMS); FUNGI;

EID: 78049431960     PISSN: 1474905X     EISSN: 14749092     Source Type: Journal    
DOI: 10.1039/c0pp00236d     Document Type: Article

References (36)

1. Y. Shichida H. Imai Visual pigment: G-protein-coupled receptor for light signals Cell. Mol. Life Sci. 1998 54 1299 1315
2. S. Peirson R. G. Foster Melanopsin: Another way of signaling light Neuron 2006 49 331 339
3. A. Terakita T. Yamashita S. Tachibanaki Y. Shichida Selective activation of G-protein subtypes by vertebrate and invertebrate rhodopsins FEBS Lett. 1998 439 110 114
4. L. Vogeley V. D. Trivedi O. A. Sineshchekov E. N. Spudich J. L. Spudich H. Luecke Crystal structure of the Anabaena sensory rhodopsin transducer J. Mol. Biol. 2007 367 741 751
5. K-H. Jung The distinct signaling mechanisms of microbial sensory rhodopsins in archaea, eubacteria and eukarya Photochem. Photobiol. 2007 83 63 69
6. Y. Sudo J. L. Spudich Three strategically placed hydrogen-bonding residues convert a proton pump into a sensory receptor Proc. Natl. Acad. Sci. U. S. A. 2006 103 16129 16134
7. J. Sasaki L. S. Brown Y. S. Chon H. Kandori A. Maeda R. Needleman J. K. Lanyi Conversion of bacteriorhodopsin into a chloride ion pump Science 1995 269 73 75
8. E. Pebay-Peyroula G. Rummel J. P. Rosenbusch E. M. Landau X-ray structure of bacteriorhodopsin at 2.5 angstroms from microcrystals grown in lipidic cubic phases Science 1997 277 1676 1681
9. H. Luecke B. Schobert H. T. Richter J. P. Cartailler J. K. Lanyi Structure of bacteriorhodopsin at 1.55 Å resolution J. Mol. Biol. 1999 291 899 911
10. N. Enami K. Yoshimura M. Murakami H. Okumura K. Ihara T. Kouyama Crystal structures of archaerhodopsin-1 and -2: Common structural motif in archaeal light-driven proton pumps J. Mol. Biol. 2006 358 675 685
11. K. Yoshimura T. Kouyama Structural role of bacterioruberin in the trimeric structure of archaerhodopsin-2 J. Mol. Biol. 2008 375 1267 1281
12. H. Luecke B. Schobert J. Stagno E. S. Imasheva J. M. Wang S. P. Balashov J. K. Lanyi Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore Proc. Natl. Acad. Sci. U. S. A. 2008 105 16561 16565
13. M. Kolbe H. Besir L. R. Essen D. Oesterhelt Structure of the light-driven chloride pump halorhodopsin at 1.8 Å resolution Science 2000 288 1390 1396
14. T. Kouyama S. Kanada Y. Takeguchi A. Narusawa M. Murakami K. Ihara Crystal structure of the light-driven chloride pump halorhodopsin from Natronomonus pharaonis J. Mol. Biol. 2010 396 564 579
15. A. Royant P. Nollert K. Edman R. Neutze E. M. Landau E. Pebay-Peyroula J. Navarro X-ray structure of sensory rhodopsin II at 2.1 Å resolution Proc. Natl. Acad. Sci. U. S. A. 2001 98 10131 10136
16. H. Luecke B. Schobert J. K. Lanyi E. N. Spudich J. L. Spudich Crystal structure of sensory rhodopsin II at 2.4 Å: Insights into color tuning and transducer interaction Science 2001 293 1499 1503
17. L. Vogeley O. A. Sineshchekov V. D. Trivedi J. Sasaki J. L. Spudich H. Luecke Anabaena sensory rhodopsin: a photochromic color sensor at 2.0 Å Science 2004 306 1390 1393
18. K. Palczewski T. Kumasaka T. Hori C. A. Behnke H. Motoshima B. A. Fox I. Le Trong D. C. Teller T. Okada R. E. Stenkamp M. Yamamoto M. Miyano Crystal structure of rhodopsin: A G Protein-coupled receptor Science 2000 289 739 745
19. M. Murakami T. Kouyama Crystal structure of squid rhodopsin Nature 2008 453 363 367
20. V. Cherezov D. M. Rosenbaum M. A. Hanson S. G. Rasmussen F. S. Thian T. S. Kobilka H. J. Choi P. Kuhn W. I. Weis B. K. Kobilka R. C. Stevens High-resolution crystal structure of an engineered human β2-adrenergic G protein-coupled receptor Science 2007 318 1258 1265
21. S. G. Rasmussen G. J. Choi D. M. Rosenbaum T. S. Kobilka F. S. Thian P. C. Edwards M. Burghammer V. R. Ratnala R. Sanishvili R. F. Fischetti G. F. Schertler W. I. Weis B. K. Kobilka Crystal structure of the human β2 adrenergic G-protein-coupled receptor Nature 2007 450 383 387
22. T. Warne M. J. Serrano-Vega J. G. Baker R. Moukhametzianov P. C. Edwards R. Henderson A. G. Leslie C. G. Tate G. F. Schertler Structure of a β1-adrenergic G-protein coupled receptor Nature 2008 454 486 491
23. V.-P. Jaakola M. T. Griffith M. A. Hanson V. Cherezov E. Y. T. Chien J. R. Lane A. P. Ijzerman R. C. Stevens The 2.6 Angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist Science 2008 322 1211 1217
24. D. L. Farrens H. G. Khorana Measurement of the rate of metarhodopsin II decay by fluorescence spectroscopy J. Biol. Chem. 1995 270 5073 5076
25. T. Naito K. Nashima-Hayama K. Ohtsu Y. Kito Photoreactions of cephalopod rhodopsin Vision Res. 1981 21 935 941
26. T. Kouyama T. Nishikawa T. Tokuhisa H. Okumura Crystal structure of the L intermediate of bacteriorhodopsin: Evidence for vertical translocation of a water molecule during the proton pumping cycle J. Mol. Biol. 2004 335 531 546
27. K. Takeda Y. Matsui N. Kamiya S. Adachi H. Okumura T. Kouyama Crystal structure of the M intermediate of bacteriorhodopsin: Allosteric structural changes mediated by sliding movement of a transmembrane helix J. Mol. Biol. 2004 341 1023 1037
28. N. Hayakawa T. Kasahara D. Hasegawa K. Yoshimura M. Murakami T. Kouyama Effect of xenon binding to a hydrophobic cavity on the proton pumping cycle in bacteriorhodopsin J. Mol. Biol. 2008 384 812 823
29. G. Váró L. S. Brown R. Needleman J. K. Lanyi Proton transport by halorhodopsin Biochemistry 1996 35 6604 6611
30. M. Sato M. Kubo T. Aizawa N. Kamo T. Kikukawa K. Nitta M. Demura Role of putative anion-binding sites in cytoplasmic and extracellular channels of Natromonas pharaonis halorhodopsin Biochemistry 2005 44 4775 4784
31. V. I. Gordeliy J. Labahn R. Moukhametzianov R. Efremov J. Granzin R. Schlesinger G. Büldt T. Savopol A. J. Scheidig J. P. Klare M. Engelhard Molecular basis of transmembrane signalling by sensory rhodopsin II-transducer complex Nature 2002 419 484 487
32. R. Nevo D. Charuvi E. Shimoni R. Schwarz A. Kaplan I. Ohad Z. Reich Thylakoid membrane perforations and connectivity enable intracellular traffic in cyanobacteria EMBO J. 2007 26 1467 1473
33. L. Shi S. R. Yoon A. G. Bezerra Jr K. H. Jung L. S. Brown Cytoplasmic shuttling of protons in anabaena sensory rhodopsin: Implications for signaling mechanism J. Mol. Biol. 2006 358 686 700
34. T. Ota Y. Furutani A. Terakita Y. Shichida H. Kandori Structural changes in the Schiff base region of squid rhodopsin upon photoisomerization studied by low-temperature FTIR spectroscopy Biochemistry 2006 45 2845 2851
35. G. L. J. DeCaluwéa P. H. M. Bovee-Geurtsa P. Rathb K. J. Rothschildb W. J. de Gripa Effect of carboxyl mutations on functional properties of bovine rhodopsin Biophys. Chem. 1995 56 79 87
36. J. H. Park P. Scherrer K. P. Hofmann H.-W. Choe O. P. Ernst Crystal structure of native opsin: the G Protein-coupled receptor rhodopsin in its ligand-free state Nature 2008 454 183 187