-
1
-
-
0006092394
-
From ciliate ontogeny to ciliate phylogeny: a program
-
Bardele C.F. From ciliate ontogeny to ciliate phylogeny: a program. Boll. Zool. 1989, 56:235-243.
-
(1989)
Boll. Zool.
, vol.56
, pp. 235-243
-
-
Bardele, C.F.1
-
2
-
-
0026699541
-
A broad molecular phylogeny of ciliates: indentification of major evolutionary trends and radiations within the phylum
-
Baroin-Tourancheau A., Delgado P., Perasso R., Adoutte A. A broad molecular phylogeny of ciliates: indentification of major evolutionary trends and radiations within the phylum. Proc. Natl. Acad. Sci. USA 1992, 89:9764-9768.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 9764-9768
-
-
Baroin-Tourancheau, A.1
Delgado, P.2
Perasso, R.3
Adoutte, A.4
-
3
-
-
70350513858
-
Taxonomic studies on a new marine ciliate, Apocoleps magnus gen. nov., spec. nov. (Ciliophora, Colepodae), isolated from Qingdao, China
-
Chen X., Warren A., Song W. Taxonomic studies on a new marine ciliate, Apocoleps magnus gen. nov., spec. nov. (Ciliophora, Colepodae), isolated from Qingdao, China. J. Ocean Uni. China 2009, 8:317-321.
-
(2009)
J. Ocean Uni. China
, vol.8
, pp. 317-321
-
-
Chen, X.1
Warren, A.2
Song, W.3
-
5
-
-
27744543065
-
Magic bullets and golden rules: data sampling in molecular phylogenetics
-
Cummings M.P., Meyer A. Magic bullets and golden rules: data sampling in molecular phylogenetics. Zoology 2005, 108:329-336.
-
(2005)
Zoology
, vol.108
, pp. 329-336
-
-
Cummings, M.P.1
Meyer, A.2
-
6
-
-
37249048389
-
Molecular phylogenetic analysis of class Colpodea (phylum Ciliophora) using broad taxon sampling
-
Dunthorn M., Foissner W., Katz L.A. Molecular phylogenetic analysis of class Colpodea (phylum Ciliophora) using broad taxon sampling. Mol. Phylogenet. Evol. 2008, 48:316-327.
-
(2008)
Mol. Phylogenet. Evol.
, vol.48
, pp. 316-327
-
-
Dunthorn, M.1
Foissner, W.2
Katz, L.A.3
-
7
-
-
0031743421
-
Profile hidden Markov models
-
Eddy S.R. Profile hidden Markov models. Bioinformatics 1998, 14:755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
8
-
-
0037052531
-
Global dispersal of free-living microbial eukaryote species
-
Finlay B.J. Global dispersal of free-living microbial eukaryote species. Science 2002, 296:1061-1063.
-
(2002)
Science
, vol.296
, pp. 1061-1063
-
-
Finlay, B.J.1
-
9
-
-
0005542842
-
Basic light and scanning electron microscopic methods for taxonomic studies of ciliated protozoa
-
Foissner W. Basic light and scanning electron microscopic methods for taxonomic studies of ciliated protozoa. Eur. J. Protistol. 1991, 27:313-330.
-
(1991)
Eur. J. Protistol.
, vol.27
, pp. 313-330
-
-
Foissner, W.1
-
11
-
-
38649130641
-
Diversity and geographic distribution of ciliates (Protista: Ciliophora)
-
Foissner W., Chao A., Katz L.A. Diversity and geographic distribution of ciliates (Protista: Ciliophora). Biodivers. Conserv. 2008, 17:345-363.
-
(2008)
Biodivers. Conserv.
, vol.17
, pp. 345-363
-
-
Foissner, W.1
Chao, A.2
Katz, L.A.3
-
12
-
-
43049099693
-
Morphology and gene sequence of Levicoleps biwae n. gen., n. sp. (Ciliophora, Prostomatida), a proposed endemic from the ancient Lake Biwa, Japan
-
Foissner W., Kusuoka Y., Shimano S. Morphology and gene sequence of Levicoleps biwae n. gen., n. sp. (Ciliophora, Prostomatida), a proposed endemic from the ancient Lake Biwa, Japan. J. Eukaryot. Microbiol. 2008, 55:185-200.
-
(2008)
J. Eukaryot. Microbiol.
, vol.55
, pp. 185-200
-
-
Foissner, W.1
Kusuoka, Y.2
Shimano, S.3
-
13
-
-
34547415681
-
Experimental design criteria in phylogenetics: where to add taxa
-
Geuten K., Massingham T., Darius P., Smets E., Goldman N. Experimental design criteria in phylogenetics: where to add taxa. Syst. Biol. 2007, 56:609-622.
-
(2007)
Syst. Biol.
, vol.56
, pp. 609-622
-
-
Geuten, K.1
Massingham, T.2
Darius, P.3
Smets, E.4
Goldman, N.5
-
14
-
-
0032025857
-
Is it better to add taxa or characters to a difficult phylogenetic problem?
-
Graybeal A. Is it better to add taxa or characters to a difficult phylogenetic problem?. Syst. Biol. 1998, 47:9-17.
-
(1998)
Syst. Biol.
, vol.47
, pp. 9-17
-
-
Graybeal, A.1
-
15
-
-
47749095118
-
Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees
-
Heath T.A., Zwickl D.J., Kim J., Hillis D.M. Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees. Syst. Biol. 2008, 57:160-166.
-
(2008)
Syst. Biol.
, vol.57
, pp. 160-166
-
-
Heath, T.A.1
Zwickl, D.J.2
Kim, J.3
Hillis, D.M.4
-
16
-
-
33747339757
-
Resolution of phylogenetic conflict in large data sets by increased taxon sampling
-
Hedtke S.M., Townsend T.M., Hillis D.M. Resolution of phylogenetic conflict in large data sets by increased taxon sampling. Syst. Biol. 2006, 55:522-529.
-
(2006)
Syst. Biol.
, vol.55
, pp. 522-529
-
-
Hedtke, S.M.1
Townsend, T.M.2
Hillis, D.M.3
-
17
-
-
84987588093
-
Ultrastructure of Prorodon (Ciliophora, Prostomatida). II. Oral cortex and phylogenetic conclusions
-
Hiller S.A. Ultrastructure of Prorodon (Ciliophora, Prostomatida). II. Oral cortex and phylogenetic conclusions. J. Eukaryot. Microbiol. 1993, 40:486-501.
-
(1993)
J. Eukaryot. Microbiol.
, vol.40
, pp. 486-501
-
-
Hiller, S.A.1
-
18
-
-
0242669921
-
Is sparse taxon sampling a problem for phylogenetic inference?
-
Hillis D.M., Pollock D.D., McGuire J.A., Zwick D.J. Is sparse taxon sampling a problem for phylogenetic inference?. Syst. Biol. 2003, 52:124-126.
-
(2003)
Syst. Biol.
, vol.52
, pp. 124-126
-
-
Hillis, D.M.1
Pollock, D.D.2
McGuire, J.A.3
Zwick, D.J.4
-
19
-
-
84986432915
-
Light and electron microscopical observations on the stomatogenesis of the ciliate Coleps amphacanthus Ehrenberg, 1833
-
Huttenlauch I., Bardele C.F. Light and electron microscopical observations on the stomatogenesis of the ciliate Coleps amphacanthus Ehrenberg, 1833. J. Protozool. 1987, 34:183-192.
-
(1987)
J. Protozool.
, vol.34
, pp. 183-192
-
-
Huttenlauch, I.1
Bardele, C.F.2
-
20
-
-
36749069500
-
Balanion masanensis n. sp. (Ciliophora: Prostomatea) from the coastal waters of Korea: morphology and small subunit ribosomal RNA gene sequence
-
Kim J.S., Jeong H.J., Lynn D., Park J.Y., Lim Y.W., Shin W. Balanion masanensis n. sp. (Ciliophora: Prostomatea) from the coastal waters of Korea: morphology and small subunit ribosomal RNA gene sequence. J. Eukaryot. Microbiol. 2007, 54:482-494.
-
(2007)
J. Eukaryot. Microbiol.
, vol.54
, pp. 482-494
-
-
Kim, J.S.1
Jeong, H.J.2
Lynn, D.3
Park, J.Y.4
Lim, Y.W.5
Shin, W.6
-
21
-
-
0036134770
-
Towards the monophyly of Haeckel's Radiolaria: 18s rRNA environmental data support the sisterhood of Polycystinea and Acantharea
-
López-García P., Rodríguez-Valera F., Moreira D. Towards the monophyly of Haeckel's Radiolaria: 18s rRNA environmental data support the sisterhood of Polycystinea and Acantharea. Mol. Biol. Evol. 2002, 19:118-121.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 118-121
-
-
López-García, P.1
Rodríguez-Valera, F.2
Moreira, D.3
-
22
-
-
84919964492
-
-
The Ciliated Protozoa: Characterization, Classification, and Guide to the Literature, third ed. Springer, Dordrecht
-
Lynn, D.H., 2008. The Ciliated Protozoa: Characterization, Classification, and Guide to the Literature, third ed. Springer, Dordrecht.
-
(2008)
-
-
Lynn, D.H.1
-
23
-
-
0002831062
-
Phylum Ciliophora Doflein, 1901
-
Society of Protozoologists, Lawrence, Kansas, J.J. Lee, G.F. Leedale, P.C. Bradbury (Eds.)
-
Lynn D.H., Small E.B. Phylum Ciliophora Doflein, 1901. An Illustrated Guide to the Protozoa 2002, 371-656. Society of Protozoologists, Lawrence, Kansas. second ed. J.J. Lee, G.F. Leedale, P.C. Bradbury (Eds.).
-
(2002)
An Illustrated Guide to the Protozoa
, pp. 371-656
-
-
Lynn, D.H.1
Small, E.B.2
-
24
-
-
0032955638
-
Phylogenetic relationships of orders within the class Colpodea (phylum Ciliophora) inferred from small subunit rRNA gene sequences
-
Lynn D.H., Wright A.D.G., Schlegel M., Foissner W. Phylogenetic relationships of orders within the class Colpodea (phylum Ciliophora) inferred from small subunit rRNA gene sequences. J. Mol. Evol. 1999, 48:605-614.
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 605-614
-
-
Lynn, D.H.1
Wright, A.D.G.2
Schlegel, M.3
Foissner, W.4
-
26
-
-
0024241467
-
The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions
-
Medlin L., Elwood H.J., Stickel S., Sogin M.L. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 1988, 71:491-499.
-
(1988)
Gene
, vol.71
, pp. 491-499
-
-
Medlin, L.1
Elwood, H.J.2
Stickel, S.3
Sogin, M.L.4
-
27
-
-
78049369968
-
-
MrModeltest v2. Evolutionary Biology Centre. Uppsala University
-
Nylander, J.A., 2004. MrModeltest v2. Evolutionary Biology Centre. Uppsala University.
-
(2004)
-
-
Nylander, J.A.1
-
28
-
-
39149141072
-
AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phyologenetics
-
Nylander J.A., Wilgenbusch J.C., Warren D.L., Swofford D.L. AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phyologenetics. Bioinformatics 2008, 24:581-583.
-
(2008)
Bioinformatics
, vol.24
, pp. 581-583
-
-
Nylander, J.A.1
Wilgenbusch, J.C.2
Warren, D.L.3
Swofford, D.L.4
-
29
-
-
77951246298
-
Phylogenetic representativeness: a new method for evaluating taxon sampling in evolutionary studies
-
Plazzi F., Ferrucci R.F., Passamonti M. Phylogenetic representativeness: a new method for evaluating taxon sampling in evolutionary studies. BMC Bioinformatics 2010, 11:209.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 209
-
-
Plazzi, F.1
Ferrucci, R.F.2
Passamonti, M.3
-
30
-
-
0036699885
-
Increased taxon sampling is advantageous for phylogenetic inference
-
Pollock D.D., Zwickl D.J., Mcguire J.A., Hillis D.M. Increased taxon sampling is advantageous for phylogenetic inference. Syst. Biol. 2002, 51:664-671.
-
(2002)
Syst. Biol.
, vol.51
, pp. 664-671
-
-
Pollock, D.D.1
Zwickl, D.J.2
Mcguire, J.A.3
Hillis, D.M.4
-
31
-
-
0032225752
-
Taxon sampling and the accuracy of large phylogenies
-
Rannala B., Huelsenbeck J.P., Yang Z., Nielsen R. Taxon sampling and the accuracy of large phylogenies. Syst. Biol. 1998, 47:702-710.
-
(1998)
Syst. Biol.
, vol.47
, pp. 702-710
-
-
Rannala, B.1
Huelsenbeck, J.P.2
Yang, Z.3
Nielsen, R.4
-
32
-
-
17744398025
-
More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy
-
Rokas A., Carroll S.B. More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy. Mol. Biol. Evol. 2005, 22:1337-1344.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1337-1344
-
-
Rokas, A.1
Carroll, S.B.2
-
33
-
-
0041386108
-
MRBAYES 3: bayesian phylogenetic inference under mixed models
-
Ronquist F., Huelsenbeck J.P. MRBAYES 3: bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
34
-
-
34047166408
-
Phylogeny of the Stichotrichea (Ciliophora: Spirotrichea) reconstructed with nuclear small subunit rRNA gene sequences: discrepancies and accordances with morphological data
-
Schmidt S.L., Bernard D., Schlegel M., Foissner W. Phylogeny of the Stichotrichea (Ciliophora: Spirotrichea) reconstructed with nuclear small subunit rRNA gene sequences: discrepancies and accordances with morphological data. J. Eukaryot. Microbiol. 2007, 54:201-209.
-
(2007)
J. Eukaryot. Microbiol.
, vol.54
, pp. 201-209
-
-
Schmidt, S.L.1
Bernard, D.2
Schlegel, M.3
Foissner, W.4
-
35
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
Shimodaira H. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 2002, 51:492-508.
-
(2002)
Syst. Biol.
, vol.51
, pp. 492-508
-
-
Shimodaira, H.1
-
36
-
-
0036139287
-
CONSEL: for assessing the confidence of phylogenetic tree selection
-
Shimodaira H., Hasegawa M. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 2001, 17:1246-1247.
-
(2001)
Bioinformatics
, vol.17
, pp. 1246-1247
-
-
Shimodaira, H.1
Hasegawa, M.2
-
37
-
-
3242887162
-
Molecular phylogeny of phyllopharyngean ciliates and their group I introns
-
Snoeyenbos-West O.L.O., Cole J., Campbell A., Coats D.W., Katz L.A. Molecular phylogeny of phyllopharyngean ciliates and their group I introns. J. Eukaryot. Microbiol. 2004, 51:441-450.
-
(2004)
J. Eukaryot. Microbiol.
, vol.51
, pp. 441-450
-
-
Snoeyenbos-West, O.L.O.1
Cole, J.2
Campbell, A.3
Coats, D.W.4
Katz, L.A.5
-
38
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML web servers
-
Stamatakis A., Hoover P., Rougemont J. A rapid bootstrap algorithm for the RAxML web servers. Syst. Biol. 2008, 57:758-771.
-
(2008)
Syst. Biol.
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
39
-
-
0031990569
-
Phylogenetic relationships between prostome and colpodean ciliates tested by small subunit rRNA sequences
-
Stechmann A., Schlegel M., Lynn D.H. Phylogenetic relationships between prostome and colpodean ciliates tested by small subunit rRNA sequences. Mol. Phylogenet. Evol. 1998, 9:48-54.
-
(1998)
Mol. Phylogenet. Evol.
, vol.9
, pp. 48-54
-
-
Stechmann, A.1
Schlegel, M.2
Lynn, D.H.3
-
40
-
-
70749095743
-
Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities
-
Stoeck T., Anke B., Christen R., Amaral-Zettler L., Rodrighuez-Mora M.J., Chistoserdov A., Orsi W., Edgecomb V.P. Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities. BMC Biol. 2009, 7:72.
-
(2009)
BMC Biol.
, vol.7
, pp. 72
-
-
Stoeck, T.1
Anke, B.2
Christen, R.3
Amaral-Zettler, L.4
Rodrighuez-Mora, M.J.5
Chistoserdov, A.6
Orsi, W.7
Edgecomb, V.P.8
-
41
-
-
77951908579
-
Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
-
Stoeck T., Bass D., Nebel M., Christen R., Jones M.D.M., Breiner H.W., Richards T.A. Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water. Mol. Ecol. 2010, 19:21-31.
-
(2010)
Mol. Ecol.
, vol.19
, pp. 21-31
-
-
Stoeck, T.1
Bass, D.2
Nebel, M.3
Christen, R.4
Jones, M.D.M.5
Breiner, H.W.6
Richards, T.A.7
-
42
-
-
33747126717
-
Molecular phylogeny of Litostome ciliates (Ciliophora, Litostomatea) with emphasis on free-living haptorian genera
-
Strüder-Kypke M., Wright A.-D.G., Foissner W., Lynn D.H. Molecular phylogeny of Litostome ciliates (Ciliophora, Litostomatea) with emphasis on free-living haptorian genera. Protist 2006, 157:261-278.
-
(2006)
Protist
, vol.157
, pp. 261-278
-
-
Strüder-Kypke, M.1
Wright, A.-D.G.2
Foissner, W.3
Lynn, D.H.4
-
43
-
-
0036187322
-
Taxonomic re-assignment of Cryptocaryon irritans, a marine fish parasite
-
Wright A.G., Colorni A. Taxonomic re-assignment of Cryptocaryon irritans, a marine fish parasite. Eur. J. Protistol. 2002, 37:375-378.
-
(2002)
Eur. J. Protistol.
, vol.37
, pp. 375-378
-
-
Wright, A.G.1
Colorni, A.2
-
44
-
-
60349086975
-
Reconsideration of systematic relationships within the order Euplotida (Protista, Ciliophora) using new sequences of the gene coding for small-subunit rRNA and testing the use of combined data sets to construct phylogenies of the Diophrys-complex
-
Yi Z., Song W., Clamp J., Chen Z., Gao S., Zhang Q. Reconsideration of systematic relationships within the order Euplotida (Protista, Ciliophora) using new sequences of the gene coding for small-subunit rRNA and testing the use of combined data sets to construct phylogenies of the Diophrys-complex. Mol. Phylogenet. Evol. 2009, 50:599-607.
-
(2009)
Mol. Phylogenet. Evol.
, vol.50
, pp. 599-607
-
-
Yi, Z.1
Song, W.2
Clamp, J.3
Chen, Z.4
Gao, S.5
Zhang, Q.6
|