-
3
-
-
33749019097
-
Innovation: A chemical toolkit for proteins - An expanded genetic code
-
Xie JM, Schultz PG (2006) Innovation: a chemical toolkit for proteins - an expanded genetic code. Nat Rev Mol Cell Biol 7:775-782.
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 775-782
-
-
Xie, J.M.1
Schultz, P.G.2
-
4
-
-
0033912062
-
Towards the nonstick egg: Designing fluorous proteins
-
Marsh ENG (2000) Towards the nonstick egg: designing fluorous proteins. Chem Biol 7:R153-R157.
-
(2000)
Chem Biol
, vol.7
-
-
Marsh, E.N.G.1
-
5
-
-
33751408183
-
Bioorthogonal noncovalent chemistry: Fluorous phases in chemical biology
-
Yoder NC, Yuksel D, Dafik L, Kumar K (2006) Bioorthogonal noncovalent chemistry: fluorous phases in chemical biology. Curr Opin Chem Biol 10:576-583.
-
(2006)
Curr Opin Chem Biol
, vol.10
, pp. 576-583
-
-
Yoder, N.C.1
Yuksel, D.2
Dafik, L.3
Kumar, K.4
-
7
-
-
33746320232
-
Fluorine in a native protein environment-how the spatial demand and polarity of fluoroalkyl groups affect protein folding
-
Jackel C, Salwiczek M, Koksch B (2006) Fluorine in a native protein environment-how the spatial demand and polarity of fluoroalkyl groups affect protein folding. Angewandte Chemie International Edition 45:4198-4203.
-
(2006)
Angewandte Chemie International Edition
, vol.45
, pp. 4198-4203
-
-
Jackel, C.1
Salwiczek, M.2
Koksch, B.3
-
8
-
-
11144320703
-
Fluorous effect in proteins: De novo design and characterization of a four-alpha-helix bundle protein containing hexafluoroleucine
-
Lee KH, Lee HY, Slutsky MM, Anderson JT, Marsh ENG (2004) Fluorous effect in proteins: de novo design and characterization of a four-alpha-helix bundle protein containing hexafluoroleucine. Biochemistry 43:16277-16284.
-
(2004)
Biochemistry
, vol.43
, pp. 16277-16284
-
-
Lee, K.H.1
Lee, H.Y.2
Slutsky, M.M.3
Anderson, J.T.4
Marsh, E.N.G.5
-
9
-
-
59649103752
-
Biosynthesis and stability of coiled-coil peptides containing (2S,4R)-5,5,5-Trifluoroleucine and (2S,4S)-5,5,5-Trifluoroleucine
-
Montclare JK, Son S, Clark GA, Kumar K, Tirrell DA (2009) Biosynthesis and stability of coiled-coil peptides containing (2S,4R)-5,5,5-Trifluoroleucine and (2S,4S)-5,5,5-Trifluoroleucine. ChemBioChem 10:84-86.
-
(2009)
ChemBioChem
, vol.10
, pp. 84-86
-
-
Montclare, J.K.1
Son, S.2
Clark, G.A.3
Kumar, K.4
Tirrell, D.A.5
-
10
-
-
33747179843
-
Stabilization of bzip peptides through incorporation of fluorinated aliphatic residues
-
Son S, Tanrikulu IC, Tirrell DA (2006) Stabilization of bzip peptides through incorporation of fluorinated aliphatic residues. ChemBioChem 7:1251-1257.
-
(2006)
ChemBioChem
, vol.7
, pp. 1251-1257
-
-
Son, S.1
Tanrikulu, I.C.2
Tirrell, D.A.3
-
11
-
-
0035901630
-
Fluorinated coiled-coil proteins prepared in vivo display enhanced thermal and chemical stability
-
Tang Y, et al. (2001) Fluorinated coiled-coil proteins prepared in vivo display enhanced thermal and chemical stability. Angewandte Chemie International Edition 40:1494-1496.
-
(2001)
Angewandte Chemie International Edition
, vol.40
, pp. 1494-1496
-
-
Tang, Y.1
-
12
-
-
0035823858
-
Biosynthesis of a highly stable coiled-coil protein containing hexafluoroleucine in an engineered bacterial host
-
Tang Y, Tirrell DA (2001) Biosynthesis of a highly stable coiled-coil protein containing hexafluoroleucine in an engineered bacterial host. J Am Chem Soc 123:11089-11090.
-
(2001)
J Am Chem Soc
, vol.123
, pp. 11089-11090
-
-
Tang, Y.1
Tirrell, D.A.2
-
14
-
-
0038276996
-
Incorporation of trifluoroisoleucine into proteins in vivo
-
Wang P, Tang Y, Tirrell DA (2003) Incorporation of trifluoroisoleucine into proteins in vivo. J Am Chem Soc 125:6900-6906.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 6900-6906
-
-
Wang, P.1
Tang, Y.2
Tirrell, D.A.3
-
15
-
-
35348855019
-
Evolution of a fluorinated green fluorescent protein
-
Yoo TH, Link AJ, Tirrell DA (2007) Evolution of a fluorinated green fluorescent protein. Proc Natl Acad Sci USA 104:13887-13890.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 13887-13890
-
-
Yoo, T.H.1
Link, A.J.2
Tirrell, D.A.3
-
16
-
-
34447572857
-
High-throughput screening for Methionyl-tRNA synthetases that enable residue-specific incorporation of noncanonical amino acids into recombinant proteins in bacterial cells.
-
Yoo TH, Tirrell DA (2007) High-throughput screening for Methionyl-tRNA synthetases that enable residue-specific incorporation of noncanonical amino acids into recombinant proteins in bacterial cells. . Angewandte Chemie International Edition 46:5340-5343.
-
(2007)
Angewandte Chemie International Edition
, vol.46
, pp. 5340-5343
-
-
Yoo, T.H.1
Tirrell, D.A.2
-
17
-
-
4544316921
-
The polar hydrophobicity of fluorinated compounds
-
Biffinger JC, Kim HW, DiMagno SG (2004) The polar hydrophobicity of fluorinated compounds. ChemBioChem 5:622-627.
-
(2004)
ChemBioChem
, vol.5
, pp. 622-627
-
-
Biffinger, J.C.1
Kim, H.W.2
DiMagno, S.G.3
-
18
-
-
0028998264
-
Increasing binding constants of ligands to carbonic-anhydrase by using greasy tails
-
Gao JM, Qiao S, Whitesides GM (1995) Increasing binding constants of ligands to carbonic-anhydrase by using greasy tails. J Med Chem 38:2292-2301.
-
(1995)
J Med Chem
, vol.38
, pp. 2292-2301
-
-
Gao, J.M.1
Qiao, S.2
Whitesides, G.M.3
-
19
-
-
27644457086
-
Fluorine in peptide design and protein engineering
-
Jackel C, Koksch B (2005) Fluorine in peptide design and protein engineering. Eur J Org Chem 2005:4483-4503.
-
(2005)
Eur J Org Chem
, vol.2005
, pp. 4483-4503
-
-
Jackel, C.1
Koksch, B.2
-
20
-
-
4544387720
-
Atropisomerism, biphenyls, and fluorine: A comparison of rotational barriers and twist angles
-
Leroux F (2004) Atropisomerism, biphenyls, and fluorine: a comparison of rotational barriers and twist angles. ChemBioChem 5:644-649.
-
(2004)
ChemBioChem
, vol.5
, pp. 644-649
-
-
Leroux, F.1
-
21
-
-
34848848499
-
Fluorine in pharmaceuticals: Looking beyond intuition
-
Muller K, Faeh C, Diederich F (2007) Fluorine in pharmaceuticals: looking beyond intuition. Science 317:1881-1886.
-
(2007)
Science
, vol.317
, pp. 1881-1886
-
-
Muller, K.1
Faeh, C.2
Diederich, F.3
-
22
-
-
4544278491
-
Organic fluorine: Odd man out
-
Dunitz JD (2004) Organic fluorine: odd man out. ChemBioChem 5:614-621.
-
(2004)
ChemBioChem
, vol.5
, pp. 614-621
-
-
Dunitz, J.D.1
-
23
-
-
0033531751
-
Oriented surface dipoles strongly influence interfacial wettabilities
-
Graupe M, Takenaga M, Koini T, Colorado R, Lee TR (1999) Oriented surface dipoles strongly influence interfacial wettabilities. J Am Chem Soc 121:3222-3223.
-
(1999)
J Am Chem Soc
, vol.121
, pp. 3222-3223
-
-
Graupe, M.1
Takenaga, M.2
Koini, T.3
Colorado, R.4
Lee, T.R.5
-
24
-
-
0037117502
-
Is the first hydration shell of lysozyme of higher density than bulk water?
-
Merzel F, Smith JC (2002) Is the first hydration shell of lysozyme of higher density than bulk water? Proc Natl Acad Sci USA 99:5378-5383.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 5378-5383
-
-
Merzel, F.1
Smith, J.C.2
-
25
-
-
2342527858
-
Dynamics of water in biological recognition
-
Pal SK, Zewail AH (2004) Dynamics of water in biological recognition. Chem Rev 104:2099-2123.
-
(2004)
Chem Rev
, vol.104
, pp. 2099-2123
-
-
Pal, S.K.1
Zewail, A.H.2
-
26
-
-
33745032291
-
Water mediation in protein folding and molecular recognition
-
Levy Y, Onuchic JN (2006) Water mediation in protein folding and molecular recognition. Annu Rev Biophys Biomol Struct 35:389-415.
-
(2006)
Annu Rev Biophys Biomol Struct
, vol.35
, pp. 389-415
-
-
Levy, Y.1
Onuchic, J.N.2
-
27
-
-
33748991142
-
Protein surface hydration mapped by site-specific mutations
-
Qiu WH, et al. (2006) Protein surface hydration mapped by site-specific mutations. Proc Natl Acad Sci USA 103:13979-13984.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 13979-13984
-
-
Qiu, W.H.1
-
28
-
-
33745470061
-
Ultrafast solvation dynamics of human serum albumin: Correlations with conformational transitions and site-selected recognition
-
Qiu WH, et al. (2006) Ultrafast solvation dynamics of human serum albumin: correlations with conformational transitions and site-selected recognition. J Phys Chem B 110:10540-10549.
-
(2006)
J Phys Chem B
, vol.110
, pp. 10540-10549
-
-
Qiu, W.H.1
-
29
-
-
0037204951
-
Probing protein electrostatics with a synthetic fluorescent amino acid
-
Cohen BE, et al. (2002) Probing protein electrostatics with a synthetic fluorescent amino acid. Science 296:1700-1703.
-
(2002)
Science
, vol.296
, pp. 1700-1703
-
-
Cohen, B.E.1
-
30
-
-
34848922762
-
Dehydration-driven solvent exposure of hydrophobic surfaces as a driving force in peptide folding
-
Daidone I, Ulmschneider MB, Di Nola A, Amadei A, Smith JC (2007) Dehydration-driven solvent exposure of hydrophobic surfaces as a driving force in peptide folding. Proc Natl Acad Sci USA 104:15230-15235.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 15230-15235
-
-
Daidone, I.1
Ulmschneider, M.B.2
Di Nola, A.3
Amadei, A.4
Smith, J.C.5
-
31
-
-
47249164324
-
Integration or segregation: How do molecules behave at oil/water interfaces?
-
Moore FG, Richmond GL (2008) Integration or segregation: how do molecules behave at oil/water interfaces? Acc Chem Res 41:739-748.
-
(2008)
Acc Chem Res
, vol.41
, pp. 739-748
-
-
Moore, F.G.1
Richmond, G.L.2
-
32
-
-
0015522150
-
Determination of secondary structures of proteins by circular-dichroism and optical rotary dispersion
-
Chen YH, Yang JT, Martinez HM (1972) Determination of secondary structures of proteins by circular-dichroism and optical rotary dispersion. Biochemistry 11:4120-4131.
-
(1972)
Biochemistry
, vol.11
, pp. 4120-4131
-
-
Chen, Y.H.1
Yang, J.T.2
Martinez, H.M.3
-
33
-
-
44349189806
-
K2D2: Estimation of protein secondary structure from circular dichroism spectra
-
Perez-Iratxeta C, Andrade-Navarro MA (2008) K2D2: estimation of protein secondary structure from circular dichroism spectra. BMC Struct Biol 8:25-29.
-
(2008)
BMC Struct Biol
, vol.8
, pp. 25-29
-
-
Perez-Iratxeta, C.1
Andrade-Navarro, M.A.2
-
34
-
-
0032541038
-
Reversible hydrogels from self-assembling artificial proteins
-
Petka WA, Harden JL, McGrath KP, Wirtz D, Tirrell DA (1998) Reversible hydrogels from self-assembling artificial proteins. Science 281:389-392.
-
(1998)
Science
, vol.281
, pp. 389-392
-
-
Petka, W.A.1
Harden, J.L.2
McGrath, K.P.3
Wirtz, D.4
Tirrell, D.A.5
-
35
-
-
0035028745
-
Mechanisms of tryptophan fluorescence shifts in proteins
-
Vivian JT, Callis PR (2001) Mechanisms of tryptophan fluorescence shifts in proteins. Biophys J 80:2093-2109.
-
(2001)
Biophys J
, vol.80
, pp. 2093-2109
-
-
Vivian, J.T.1
Callis, P.R.2
-
36
-
-
0001966229
-
-
ed JR Lakowicz (Plenum Press, New York)
-
Steiner RF (1991) Top. fluoresc. spectrosc, ed JR Lakowicz (Plenum Press, New York), Vol 2, pp 1-52.
-
(1991)
Top. Fluoresc. Spectrosc
, vol.2
, pp. 1-52
-
-
Steiner, R.F.1
-
37
-
-
66049120630
-
Ultrafast quenching of tryptophan fluorescence in proteins: Interresidue and intrahelical electron transfer
-
Qiu WH, et al. (2008) Ultrafast quenching of tryptophan fluorescence in proteins: interresidue and intrahelical electron transfer. Chem Phys 350:154-164.
-
(2008)
Chem Phys
, vol.350
, pp. 154-164
-
-
Qiu, W.H.1
-
38
-
-
24644444675
-
Analysis of tryptophan fluorescence lifetimes in a series of human serum albumin mutants with substitutions in subdomain 2A
-
Siemiarczuk A, Petersen CE, Ha CE, Yang JS, Bhagavan NV (2004) Analysis of tryptophan fluorescence lifetimes in a series of human serum albumin mutants with substitutions in subdomain 2A. Cell Biochem Biophys 40:115-122.
-
(2004)
Cell Biochem Biophys
, vol.40
, pp. 115-122
-
-
Siemiarczuk, A.1
Petersen, C.E.2
Ha, C.E.3
Yang, J.S.4
Bhagavan, N.V.5
-
39
-
-
69549114730
-
Quasi-static self-quenching of Trp-X and X-Trp dipeptides in water: Ultrafast fluorescence decay
-
Xu JH, Knutson JR (2009) Quasi-static self-quenching of Trp-X and X-Trp dipeptides in water: ultrafast fluorescence decay. J Phys Chem B 113:12084-12089.
-
(2009)
J Phys Chem B
, vol.113
, pp. 12084-12089
-
-
Xu, J.H.1
Knutson, J.R.2
-
40
-
-
1842525751
-
Femtosecond studies of tryptophan solvation: Correlation function and water dynamics at lipid surfaces
-
Lu WY, Kim J, Qiu WH, Zhong DP (2004) Femtosecond studies of tryptophan solvation: correlation function and water dynamics at lipid surfaces. Chem Phys Lett 388:120-126.
-
(2004)
Chem Phys Lett
, vol.388
, pp. 120-126
-
-
Lu, W.Y.1
Kim, J.2
Qiu, W.H.3
Zhong, D.P.4
-
41
-
-
33947425139
-
Hydration dynamics and time scales of coupled water-protein fluctuations
-
Li TP, Hassanali AAP, Kao YT, Zhong DP, Singer SJ (2007) Hydration dynamics and time scales of coupled water-protein fluctuations. J Am Chem Soc 129:3376-3382.
-
(2007)
J Am Chem Soc
, vol.129
, pp. 3376-3382
-
-
Li, T.P.1
Hassanali, A.A.P.2
Kao, Y.T.3
Zhong, D.P.4
Singer, S.J.5
-
42
-
-
68049087927
-
Protein hydration dynamics and molecular mechanism of coupled water-protein fluctuations
-
Zhang LY, Yang Y, Kao YT, Wang LJ, Zhong DP (2009) Protein hydration dynamics and molecular mechanism of coupled water-protein fluctuations. J Am Chem Soc 131:10677-10691.
-
(2009)
J Am Chem Soc
, vol.131
, pp. 10677-10691
-
-
Zhang, L.Y.1
Yang, Y.2
Kao, Y.T.3
Wang, L.J.4
Zhong, D.P.5
-
43
-
-
33847388020
-
Probing polar solvation dynamics in proteins: A molecular dynamics simulation analysis
-
Golosov AA, Karplus M (2007) Probing polar solvation dynamics in proteins: a molecular dynamics simulation analysis. J Phys Chem B 111:1482-1490.
-
(2007)
J Phys Chem B
, vol.111
, pp. 1482-1490
-
-
Golosov, A.A.1
Karplus, M.2
-
44
-
-
30744471668
-
Modulating protein structure with fluorous amino acids: Increased stability and native-like structure conferred on a 4-helix bundle protein by hexafluoroleucine
-
Lee HY, Lee KH, Al-Hashimi HM, Marsh ENG (2006) Modulating protein structure with fluorous amino acids: increased stability and native-like structure conferred on a 4-helix bundle protein by hexafluoroleucine. J Am Chem Soc 128:337-343.
-
(2006)
J Am Chem Soc
, vol.128
, pp. 337-343
-
-
Lee, H.Y.1
Lee, K.H.2
Al-Hashimi, H.M.3
Marsh, E.N.G.4
-
45
-
-
1542375172
-
Hydration dynamics near a model protein surface
-
Russo D, Hura G, Head-Gordon T (2004) Hydration dynamics near a model protein surface. Biophys J 86:1852-1862.
-
(2004)
Biophys J
, vol.86
, pp. 1852-1862
-
-
Russo, D.1
Hura, G.2
Head-Gordon, T.3
-
47
-
-
26944481188
-
Interfaces and the driving force of hydrophobic assembly
-
Chandler D (2005) Interfaces and the driving force of hydrophobic assembly. Nature 437:640-647.
-
(2005)
Nature
, vol.437
, pp. 640-647
-
-
Chandler, D.1
-
48
-
-
0036667303
-
Molecular bonding and interactions at aqueous surfaces as probed by vibrational sum frequency spectroscopy
-
Richmond GL (2002) Molecular bonding and interactions at aqueous surfaces as probed by vibrational sum frequency spectroscopy. Chem Rev 102:2693-2724.
-
(2002)
Chem Rev
, vol.102
, pp. 2693-2724
-
-
Richmond, G.L.1
-
49
-
-
33646392509
-
Sum-frequency vibrational spectroscopy on water interfaces: Polar orientation of water molecules at interfaces
-
Shen YR, Ostroverkhov V (2006) Sum-frequency vibrational spectroscopy on water interfaces: polar orientation of water molecules at interfaces. Chem Rev 106:1140-1154.
-
(2006)
Chem Rev
, vol.106
, pp. 1140-1154
-
-
Shen, Y.R.1
Ostroverkhov, V.2
-
50
-
-
35448953685
-
Solvent coarse-graining and the string method applied to the hydrophobic collapse of a hydrated chain
-
Miller TF, Vanden-Eijnden E, Chandler D (2007) Solvent coarse-graining and the string method applied to the hydrophobic collapse of a hydrated chain. Proc Natl Acad Sci USA 104:14559-14564.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 14559-14564
-
-
Miller, T.F.1
Vanden-Eijnden, E.2
Chandler, D.3
-
52
-
-
0035980398
-
Effect of solute size and solute-water attractive interactions on hydration water structure around hydrophobic solutes
-
Ashbaugh HS, Paulaitis ME (2001) Effect of solute size and solute-water attractive interactions on hydration water structure around hydrophobic solutes. J Am Chem Soc 123:10721-10728.
-
(2001)
J Am Chem Soc
, vol.123
, pp. 10721-10728
-
-
Ashbaugh, H.S.1
Paulaitis, M.E.2
-
53
-
-
0037187108
-
The hydrophobic effect and the influence of solutesolvent attractions
-
Huang DM, Chandler D (2002) The hydrophobic effect and the influence of solutesolvent attractions. J Phys Chem B 106:2047-2053.
-
(2002)
J Phys Chem B
, vol.106
, pp. 2047-2053
-
-
Huang, D.M.1
Chandler, D.2
-
54
-
-
84930069181
-
Water in contact with extended hydrophobic surfaces: Direct evidence of weak dewetting
-
Jensen TR, et al. (2003) Water in contact with extended hydrophobic surfaces: direct evidence of weak dewetting. Phys Rev Lett 90:086101.
-
(2003)
Phys Rev Lett
, vol.90
, pp. 086101
-
-
Jensen, T.R.1
-
55
-
-
77952370938
-
On the origin of the hydrophobic water gap: An X-ray reflectivity and MD simulation study
-
Mezger M, et al. (2010) On the origin of the hydrophobic water gap: an X-ray reflectivity and MD simulation study. J Am Chem Soc 132:6735-6741.
-
(2010)
J Am Chem Soc
, vol.132
, pp. 6735-6741
-
-
Mezger, M.1
-
56
-
-
77956355917
-
Molecular origins of fluorocarbon hydrophobicity
-
10.1073/pnas.0915169107
-
Rossky PJ, Dalvi VH (2010) Molecular origins of fluorocarbon hydrophobicity. Proc Natl Acad Sci USA 10.1073/pnas.0915169107.
-
(2010)
Proc Natl Acad Sci USA
-
-
Rossky, P.J.1
Dalvi, V.H.2
|