-
1
-
-
0032727696
-
Tracing the thread of plastid diversity through the tapestry of life
-
Delwiche CF (1999) Tracing the thread of plastid diversity through the tapestry of life. Am Nat 154: S164-S177.
-
(1999)
Am Nat
, vol.154
-
-
Delwiche, C.F.1
-
2
-
-
0037126071
-
Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
-
Martin W, Rujan T, Richly E, Hansen S, Hasegawa M, et al. (2002) Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci USA 99: 12246-12251.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 12246-12251
-
-
Martin, W.1
Rujan, T.2
Richly, E.3
Hansen, S.4
Hasegawa, M.5
-
3
-
-
47249152709
-
Targeting of nucleus-encoded proteins to chloroplasts in plants
-
Jarvis P (2008) Targeting of nucleus-encoded proteins to chloroplasts in plants. New Phytol 179: 257-285.
-
(2008)
New Phytol
, vol.179
, pp. 257-285
-
-
Jarvis, P.1
-
4
-
-
57649129659
-
Evolution of the apicoplast and its host: From heterotrophy to autotrophy and back again
-
Oborni ́k M, Janous ̌kovec J, Chrudimsky ́ T, Lukes ̌ J (2009) Evolution of the apicoplast and its host: From heterotrophy to autotrophy and back again. Int J Parasitol 39: 1-12.
-
(2009)
Int J Parasitol
, vol.39
, pp. 1-12
-
-
Oborník, M.1
Janouškovec, J.2
Chrudimský, T.3
Lukeš, J.4
-
5
-
-
6044252163
-
The genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism
-
Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, et al. (2004) The genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism. Science 306: 79-86.
-
(2004)
Science
, vol.306
, pp. 79-86
-
-
Armbrust, E.V.1
Berges, J.A.2
Bowler, C.3
Green, B.R.4
Martinez, D.5
-
6
-
-
0036443528
-
Protein transport into secondary plastids and the evolution of primary and secondary plastids
-
Kroth PG (2002) Protein transport into secondary plastids and the evolution of primary and secondary plastids. Int Rev Cytol Surv Cell Biol 221: 191-255.
-
(2002)
Int Rev Cytol Surv Cell Biol
, vol.221
, pp. 191-255
-
-
Kroth, P.G.1
-
7
-
-
1042290470
-
The low molecular mass subunits of the photosynthetic supracomplex, photosystem II
-
Shi LX, Schröder WP (2004) The low molecular mass subunits of the photosynthetic supracomplex, photosystem II. Biochim Biophys Acta 1608: 75-96.
-
(2004)
Biochim Biophys Acta
, vol.1608
, pp. 75-96
-
-
Shi, L.X.1
Schröder, W.P.2
-
8
-
-
0037172810
-
Proteomic analysis of a highly active photosystem II preparation from the cyanobacterium Synechocystis sp. PCC 6803 reveals the presence of novel polypeptides
-
Kashino Y, Lauber WM, Carroll JA, Wang Q, Whitmarsh J, et al. (2002) Proteomic analysis of a highly active photosystem II preparation from the cyanobacterium Synechocystis sp. PCC 6803 reveals the presence of novel polypeptides. Biochemistry 41: 8004-8012.
-
(2002)
Biochemistry
, vol.41
, pp. 8004-8012
-
-
Kashino, Y.1
Lauber, W.M.2
Carroll, J.A.3
Wang, Q.4
Whitmarsh, J.5
-
9
-
-
51249162507
-
Nucleotide sequence of the cyanelle DNA from Cyanophora paradoxa
-
Stirewalt VL, Michalowski CB, Loeffelhardt W, Bohnert HJ, Bryant DA (1995) Nucleotide sequence of the cyanelle DNA from Cyanophora paradoxa. Plant Mol Biol Rep 13: 327-332.
-
(1995)
Plant Mol Biol Rep
, vol.13
, pp. 327-332
-
-
Stirewalt, V.L.1
Michalowski, C.B.2
Loeffelhardt, W.3
Bohnert, H.J.4
Bryant, D.A.5
-
10
-
-
51649139576
-
Complete nucleotide sequence of the Porphyra purpurea chloroplast genome
-
Reith ME, Munholland J (1995) Complete nucleotide sequence of the Porphyra purpurea chloroplast genome. Plant Mol Biol Rep 13: 333-335.
-
(1995)
Plant Mol Biol Rep
, vol.13
, pp. 333-335
-
-
Reith, M.E.1
Munholland, J.2
-
11
-
-
0032900424
-
The plastid genome of the cryptophyte alga Guillardia theta: Complete sequence and conserved synteny groups confirm its common ancestry with red algae
-
Douglas SE, Penny SL (1999) The plastid genome of the cryptophyte alga Guillardia theta: complete sequence and conserved synteny groups confirm its common ancestry with red algae. J Mol Evol 48: 236- 244.
-
(1999)
J Mol Evol
, vol.48
, pp. 236-244
-
-
Douglas, S.E.1
Penny, S.L.2
-
12
-
-
33947414878
-
Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: Comparison with other plastid genomes of the red lineage
-
Oudot-Le Secq MP, Grimwood J, Shapiro H, Armbrust EV, Bowler C, et al. (2007) Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage. Mol Genet Genom 277: 427-439.
-
(2007)
Mol Genet Genom
, vol.277
, pp. 427-439
-
-
Secq, O.-L.M.P.1
Grimwood, J.2
Shapiro, H.3
Armbrust, E.V.4
Bowler, C.5
-
13
-
-
44849092579
-
Chloroplast genome sequencing analysis of Heterosigma akashiwo CCMP452 (West Atlantic) and NIES 293 (West Pacific) strains (er)
-
Cattolico RA, Jacobs MA, Zhou Y, Chang J, Duplessis M, et al. (2008) Chloroplast genome sequencing analysis of Heterosigma akashiwo CCMP452 (West Atlantic) and NIES 293 (West Pacific) strains (er). BMC Genomics 9: 211-221.
-
(2008)
BMC Genomics
, vol.9
, pp. 211-221
-
-
Cattolico, R.A.1
Jacobs, M.A.2
Zhou, Y.3
Chang, J.4
Duplessis, M.5
-
14
-
-
56249098614
-
The Phaeodactylum genome reveals the evolutionary history of diatom genomes
-
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, et al. (2008) The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature 456: 239-244.
-
(2008)
Nature
, vol.456
, pp. 239-244
-
-
Bowler, C.1
Allen, A.E.2
Badger, J.H.3
Grimwood, J.4
Jabbari, K.5
-
16
-
-
33748934377
-
Molecular genetic manipulation of the diatom Thalassiosira pseudonana (Bacillariophyceae)
-
Poulsen N, Chesley PM, Kroger N (2006) Molecular genetic manipulation of the diatom Thalassiosira pseudonana (Bacillariophyceae). J Phycol 42: 1059-1065.
-
(2006)
J Phycol
, vol.42
, pp. 1059-1065
-
-
Poulsen, N.1
Chesley, P.M.2
Kroger, N.3
-
17
-
-
0029966913
-
Stable nuclear transformation of the diatom Phaeodactylum tricornutum
-
Apt KE, Kroth PG, Grossman AR (1996) Stable nuclear transformation of the diatom Phaeodactylum tricornutum. Mol Gen Genet 252: 572-579.
-
(1996)
Mol Gen Genet
, vol.252
, pp. 572-579
-
-
Apt, K.E.1
Kroth, P.G.2
Grossman, A.R.3
-
18
-
-
0032790451
-
Transformation of Nonselectable Reporter Genes in Marine Diatoms
-
Falciatore A, Casotti R, Leblanc C, Abrescia C, Bowler C (1999) Transformation of Nonselectable Reporter Genes in Marine Diatoms. Mar Biotechnol 1: 239-251.
-
(1999)
Mar Biotechnol
, vol.1
, pp. 239-251
-
-
Falciatore, A.1
Casotti, R.2
Leblanc, C.3
Abrescia, C.4
Bowler, C.5
-
19
-
-
58149204053
-
Update of the Diatom EST Database: A new tool for digital transcriptomics
-
(Database issue)
-
Maheswari U, Mock T, Armbrust EV, Bowler C (2009) Update of the Diatom EST Database: a new tool for digital transcriptomics. Nucleic Acids Res 37 (Database issue): D1001-5.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Maheswari, U.1
Mock, T.2
Armbrust, E.V.3
Bowler, C.4
-
20
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
Emanuelsson O, Brunak S, von Heijne G, Nielsen H (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2: 953-971.
-
(2007)
Nat Protoc
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
21
-
-
12844260363
-
Identification and characterization of a new conserved motif within the presequence of proteins targeted into complex diatom plastids
-
Kilian O, Kroth PG (2005) Identification and characterization of a new conserved motif within the presequence of proteins targeted into complex diatom plastids. Plant J 41: 175-83.
-
(2005)
Plant J
, vol.41
, pp. 175-183
-
-
Kilian, O.1
Kroth, P.G.2
-
22
-
-
34250179494
-
Protein targeting into complex diatom plastids: Functional characterisation of a specific targeting motif
-
Gruber A, Vugrinec S, Hempel F, Gould SB, Maier UG, et al. (2007) Protein targeting into complex diatom plastids: functional characterisation of a specific targeting motif. Plant Mol Biol 64: 519-530.
-
(2007)
Plant Mol Biol
, vol.64
, pp. 519-530
-
-
Gruber, A.1
Vugrinec, S.2
Hempel, F.3
Gould, S.B.4
Maier, U.G.5
-
23
-
-
15044345034
-
Protein targeting to the chloroplasts of photosynthetic eukaryotes: Getting there is half the fun
-
Nassoury N, Morse D (2005) Protein targeting to the chloroplasts of photosynthetic eukaryotes: getting there is half the fun. Biochim Biophys Acta 1743: 5-19.
-
(2005)
Biochim Biophys Acta
, vol.1743
, pp. 5-19
-
-
Nassoury, N.1
Morse, D.2
-
24
-
-
67649998350
-
Genomic Footprints of a Cryptic Plastid Endosymbiosis in Diatoms
-
Moustafa A, Beszteri B, Maier UG, Bowler C, Valentin K, et al. (2009) Genomic Footprints of a Cryptic Plastid Endosymbiosis in Diatoms. Science 324: 1724-1726.
-
(2009)
Science
, vol.324
, pp. 1724-1726
-
-
Moustafa, A.1
Beszteri, B.2
Maier, U.G.3
Bowler, C.4
Valentin, K.5
-
25
-
-
0037036943
-
Dealing with saturation at amino acid level: A case study based on anciently duplicated zebrafish genes
-
Van de Peer Y, Frickey T, Taylor JS, Meyer A (2002) Dealing with saturation at amino acid level: a case study based on anciently duplicated zebrafish genes. Gene 295: 205-211.
-
(2002)
Gene
, vol.295
, pp. 205-211
-
-
van de Peer, Y.1
Frickey, T.2
Taylor, J.S.3
Meyer, A.4
-
26
-
-
2442691520
-
A byesian mixture model for across-site heterogenities in the amino-acid replacement process
-
Lartillot N, Philippe H (2004) A byesian mixture model for across-site heterogenities in the amino-acid replacement process. Mol Biol Evol 21: 1095-1109.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1095-1109
-
-
Lartillot, N.1
Philippe, H.2
-
27
-
-
47249122561
-
A site- and time-heterogenous model of amino acid replacement
-
Blanquart S, Lartillot N (2008) A site- and time-heterogenous model of amino acid replacement. Mol Biol Evol 25: 842-858.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 842-858
-
-
Blanquart, S.1
Lartillot, N.2
-
28
-
-
60249085223
-
Psb28 protein is involved in the biogenesis of the photosystem II inner antenna CP47 (PsbB) in the cyanobacterium Synechocystis sp. PCC 6803
-
Dobáková M, Sobotka R, Tichý M, Komenda J (2009) Psb28 protein is involved in the biogenesis of the photosystem II inner antenna CP47 (PsbB) in the cyanobacterium Synechocystis sp. PCC 6803. Plant Physiol 149: 1076-1086.
-
(2009)
Plant Physiol
, vol.149
, pp. 1076-1086
-
-
Dobáková, M.1
Sobotka, R.2
Tichý, M.3
Komenda, J.4
-
29
-
-
0035056576
-
Many parallel looses of infA from chloroplast DNA during angiosperm evolution with multiple independet transfers to nucleus
-
Millen RS, Olmstead RG, Adams KL, Palmer JD, Lao NT, et al. (2001) Many parallel looses of infA from chloroplast DNA during angiosperm evolution with multiple independet transfers to nucleus. Plant Cell 13: 645-658.
-
(2001)
Plant Cell
, vol.13
, pp. 645-658
-
-
Millen, R.S.1
Olmstead, R.G.2
Adams, K.L.3
Palmer, J.D.4
Lao, N.T.5
-
30
-
-
3042755050
-
Simple and complex nuclear loci created by newly transferred chloroplast DNA in tobacco
-
Huang CY, Ayliffe MA, Timmis JN (2004) Simple and complex nuclear loci created by newly transferred chloroplast DNA in tobacco. Proc Natl Acad Sci USA 101: 9710-9715.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 9710-9715
-
-
Huang, C.Y.1
Ayliffe, M.A.2
Timmis, J.N.3
-
31
-
-
55549094836
-
Transfer of plastid DNA to the nucleus is elevated during male gametogenesis in tobacco
-
Sheppard AE, Ayliffe MA, Blatch L, Day A, Delaney SK, et al. (2008) Transfer of plastid DNA to the nucleus is elevated during male gametogenesis in tobacco. Plant Physiol 148: 328-336.
-
(2008)
Plant Physiol
, vol.148
, pp. 328-336
-
-
Sheppard, A.E.1
Ayliffe, M.A.2
Blatch, L.3
Day, A.4
Delaney, S.K.5
-
33
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41: 95-98.
-
(1999)
Nucl Acids Symp Ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
34
-
-
0037100671
-
Mafft: A novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh K, Misawa K, Kuma K, Miyata T (2002) Mafft: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucl Acids Res 30: 3059-3066.
-
(2002)
Nucl Acids Res
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
36
-
-
0242578620
-
A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O (2003) A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
37
-
-
45849154166
-
An improved general amino-acid replacement matrix
-
Le SQ, Gascuel O (2008) An Improved General Amino-Acid Replacement Matrix. Mol Biol Evol 25: 1307-1320.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1307-1320
-
-
Le, S.Q.1
Gascuel, O.2
-
38
-
-
34848926649
-
Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum
-
Siaut M, Heijde M, Mangogna M, Montsant A, Coesel S, et al. (2007) Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum. Gene 406: 23-35.
-
(2007)
Gene
, vol.406
, pp. 23-35
-
-
Siaut, M.1
Heijde, M.2
Mangogna, M.3
Montsant, A.4
Coesel, S.5
|