-
1
-
-
67651222400
-
A flexible and accurate genotype imputation method for the next generation of genome-wide association studies.
-
10.1371/journal.pgen.1000529, 2689936, 19543373
-
Howie BN, Donnelly P, Marchini J. A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet 2009, 5:e1000529. 10.1371/journal.pgen.1000529, 2689936, 19543373.
-
(2009)
PLoS Genet
, vol.5
-
-
Howie, B.N.1
Donnelly, P.2
Marchini, J.3
-
2
-
-
37549064336
-
Mach 1.0: Rapid haplotype reconstruction and missing genotype inference.
-
Li Y, Ding J, Abecasis GR. Mach 1.0: Rapid haplotype reconstruction and missing genotype inference. Am J Hum Genet 2006, 79:S2290.
-
(2006)
Am J Hum Genet
, vol.79
-
-
Li, Y.1
Ding, J.2
Abecasis, G.R.3
-
3
-
-
35348817330
-
Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering.
-
10.1086/521987, 2265661, 17924348
-
Browning SR, Browning BL. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am J Hum Genet 2007, 81:1084-1097. 10.1086/521987, 2265661, 17924348.
-
(2007)
Am J Hum Genet
, vol.81
, pp. 1084-1097
-
-
Browning, S.R.1
Browning, B.L.2
-
4
-
-
62649155943
-
A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals.
-
10.1016/j.ajhg.2009.01.005, 2668004, 19200528
-
Browning BL, Browning SR. A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. Am J Hum Genet 2009, 84:210-223. 10.1016/j.ajhg.2009.01.005, 2668004, 19200528.
-
(2009)
Am J Hum Genet
, vol.84
, pp. 210-223
-
-
Browning, B.L.1
Browning, S.R.2
-
5
-
-
33644974019
-
A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase.
-
10.1086/502802, 1424677, 16532393
-
Scheet P, Stephens M. A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet 2006, 78:629-644. 10.1086/502802, 1424677, 16532393.
-
(2006)
Am J Hum Genet
, vol.78
, pp. 629-644
-
-
Scheet, P.1
Stephens, M.2
-
6
-
-
18544381909
-
A high-resolution recombination map of the human genome.
-
Kong A, Gudbjartsson DF, Sainz J, Jonsdottir GM, Gudjonsson SA, Richardsson B, Sigurdardottir S, Barnard J, Hallbeck B, Masson G, Shlien A, Palsson ST, Frigge ML, Thorgeirsson TE, Gulcher JR, Stefansson K. A high-resolution recombination map of the human genome. Nat Genet 2002, 31:241-247.
-
(2002)
Nat Genet
, vol.31
, pp. 241-247
-
-
Kong, A.1
Gudbjartsson, D.F.2
Sainz, J.3
Jonsdottir, G.M.4
Gudjonsson, S.A.5
Richardsson, B.6
Sigurdardottir, S.7
Barnard, J.8
Hallbeck, B.9
Masson, G.10
Shlien, A.11
Palsson, S.T.12
Frigge, M.L.13
Thorgeirsson, T.E.14
Gulcher, J.R.15
Stefansson, K.16
-
7
-
-
39449116116
-
High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans.
-
10.1126/science.1151851, 18239090
-
Coop G, Wen X, Ober C, Pritchard JK, Przeworski M. High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans. Science 2008, 319:1395-1398. 10.1126/science.1151851, 18239090.
-
(2008)
Science
, vol.319
, pp. 1395-1398
-
-
Coop, G.1
Wen, X.2
Ober, C.3
Pritchard, J.K.4
Przeworski, M.5
-
8
-
-
39449106471
-
Sequence variants in the RNF212 gene associate with genomewide recombination rate.
-
10.1126/science.1152422, 18239089
-
Kong A, Thorleifsson G, Stefansson H, Masson G, Helgason A, Gudbjartsson DF, Jonsdottir GM, Gudjonsson SA, Sverrisson S, Thorlacius T, Jonasdottir A, Hardarson GA, Palsson ST, Frigge ML, Gulcher JR, Thorsteinsdottir U, Stefansson K. Sequence variants in the RNF212 gene associate with genomewide recombination rate. Science 2008, 319:1398-1401. 10.1126/science.1152422, 18239089.
-
(2008)
Science
, vol.319
, pp. 1398-1401
-
-
Kong, A.1
Thorleifsson, G.2
Stefansson, H.3
Masson, G.4
Helgason, A.5
Gudbjartsson, D.F.6
Jonsdottir, G.M.7
Gudjonsson, S.A.8
Sverrisson, S.9
Thorlacius, T.10
Jonasdottir, A.11
Hardarson, G.A.12
Palsson, S.T.13
Frigge, M.L.14
Gulcher, J.R.15
Thorsteinsdottir, U.16
Stefansson, K.17
-
9
-
-
72449122779
-
Parental origin of sequence variants associated with complex diseases.
-
10.1038/nature08625, 20016592
-
Kong A, Steinthorsdottir V, Masson G, Thorleifsson G, Sulem P, Besenbacher S, Jonasdottir A, Sigurdsson A, Kristinssona KT, Jonasdottir A, Frigge ML, Gylfason A, Olason PI, Gudjonsson SA, Sverrisson S, Stacey SN, Sigurgeirsson B, Benediktsdottir KR, Sigurdsson H, Jonsson T, Benediktsson R, Olafsson JH, Johannsson OT, Hreidarsson AB, Sigurdsson G, Consortium D, Ferguson-Smith AC, Gudbjartsson DF, Thorsteinsdottir U, Stefansson K. Parental origin of sequence variants associated with complex diseases. Nature 2009, 462:868-874. 10.1038/nature08625, 20016592.
-
(2009)
Nature
, vol.462
, pp. 868-874
-
-
Kong, A.1
Steinthorsdottir, V.2
Masson, G.3
Thorleifsson, G.4
Sulem, P.5
Besenbacher, S.6
Jonasdottir, A.7
Sigurdsson, A.8
Kristinssona, K.T.9
Jonasdottir, A.10
Frigge, M.L.11
Gylfason, A.12
Olason, P.I.13
Gudjonsson, S.A.14
Sverrisson, S.15
Stacey, S.N.16
Sigurgeirsson, B.17
Benediktsdottir, K.R.18
Sigurdsson, H.19
Jonsson, T.20
Benediktsson, R.21
Olafsson, J.H.22
Johannsson, O.T.23
Hreidarsson, A.B.24
Sigurdsson, G.25
Consortium, D.26
Ferguson-Smith, A.C.27
Gudbjartsson, D.F.28
Thorsteinsdottir, U.29
Stefansson, K.30
more..
-
10
-
-
0037167852
-
Detecting recent positive selection in the human genome from haplotype structure.
-
10.1038/nature01140, 12397357
-
Sabeti PC, Reich DE, Higgins JM, Levine HZP, Richter DJ, Schaffner SF, Gabriel SB, Platko JV, Patterson NJ, McDonald GJ, Ackerman HC, Campbell SJ, Altshuler D, Cooper R, Kwiatkowski D, Ward R, Lander ES. Detecting recent positive selection in the human genome from haplotype structure. Nature 2002, 419:832-837. 10.1038/nature01140, 12397357.
-
(2002)
Nature
, vol.419
, pp. 832-837
-
-
Sabeti, P.C.1
Reich, D.E.2
Higgins, J.M.3
Levine, H.Z.P.4
Richter, D.J.5
Schaffner, S.F.6
Gabriel, S.B.7
Platko, J.V.8
Patterson, N.J.9
McDonald, G.J.10
Ackerman, H.C.11
Campbell, S.J.12
Altshuler, D.13
Cooper, R.14
Kwiatkowski, D.15
Ward, R.16
Lander, E.S.17
-
11
-
-
10044232695
-
Algorithms for inferring haplotypes.
-
10.1002/gepi.20024, 15368348
-
Niu T. Algorithms for inferring haplotypes. Genet Epidemiol 2004, 27:334-347. 10.1002/gepi.20024, 15368348.
-
(2004)
Genet Epidemiol
, vol.27
, pp. 334-347
-
-
Niu, T.1
-
12
-
-
33344458848
-
A comparison of phasing algorithms for trios and unrelated individuals.
-
10.1086/500808, 1380287, 16465620
-
Marchini J, Cutler D, Patterson N, Stephens M, Eskin E, Halperin E, Lin S, Qin ZS, Munro HM, Abecasis GR, Donnelly P. A comparison of phasing algorithms for trios and unrelated individuals. Am J Hum Genet 2006, 78:437-450. 10.1086/500808, 1380287, 16465620.
-
(2006)
Am J Hum Genet
, vol.78
, pp. 437-450
-
-
Marchini, J.1
Cutler, D.2
Patterson, N.3
Stephens, M.4
Eskin, E.5
Halperin, E.6
Lin, S.7
Qin, Z.S.8
Munro, H.M.9
Abecasis, G.R.10
Donnelly, P.11
-
13
-
-
0242691208
-
A comparison of Bayesian methods for haplotype reconstruction from population genotype data.
-
10.1086/379378, 1180495, 14574645
-
Stephens M, Donnelly P. A comparison of Bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet 2003, 73:1162-1169. 10.1086/379378, 1180495, 14574645.
-
(2003)
Am J Hum Genet
, vol.73
, pp. 1162-1169
-
-
Stephens, M.1
Donnelly, P.2
-
14
-
-
0036138183
-
Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms.
-
10.1086/338446, 448439, 11741196
-
Niu T, Qin ZS, Xu X, Liu JS. Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms. Am J Hum Genet 2002, 70:157-169. 10.1086/338446, 448439, 11741196.
-
(2002)
Am J Hum Genet
, vol.70
, pp. 157-169
-
-
Niu, T.1
Qin, Z.S.2
Xu, X.3
Liu, J.S.4
-
15
-
-
4444319904
-
Haplotype and missing data inference in nuclear families.
-
10.1101/gr.2204604, 509272, 15256514
-
Lin S, Chakravarti A, Cutler DJ. Haplotype and missing data inference in nuclear families. Genome Res 2004, 14:1624-1632. 10.1101/gr.2204604, 509272, 15256514.
-
(2004)
Genome Res
, vol.14
, pp. 1624-1632
-
-
Lin, S.1
Chakravarti, A.2
Cutler, D.J.3
-
16
-
-
0036842635
-
Haplotype inference in random population samples.
-
10.1086/344347, 385088, 12386835
-
Lin S, Cutler DJ, Zwick ME, Chakravarti A. Haplotype inference in random population samples. Am J Hum Genet 2002, 71:1129-1137. 10.1086/344347, 385088, 12386835.
-
(2002)
Am J Hum Genet
, vol.71
, pp. 1129-1137
-
-
Lin, S.1
Cutler, D.J.2
Zwick, M.E.3
Chakravarti, A.4
-
17
-
-
36248966554
-
Understanding the accuracy of statistical haplotype inference with sequence data of known phase.
-
2291540, 17922479
-
Andrés AM, Clark AG, Shimmin L, Boerwinkle E, Sing CF, Hixson JE. Understanding the accuracy of statistical haplotype inference with sequence data of known phase. Genet Epidemiol 2007, 31:659-671. 2291540, 17922479.
-
(2007)
Genet Epidemiol
, vol.31
, pp. 659-671
-
-
Andrés, A.M.1
Clark, A.G.2
Shimmin, L.3
Boerwinkle, E.4
Sing, C.F.5
Hixson, J.E.6
-
18
-
-
58549115758
-
Haplotyping methods for pedigrees.
-
10.1159/000194978, 2692835,2692835, 19172084
-
Gao G, Allison DB, Hoeschele I. Haplotyping methods for pedigrees. Hum Hered 2009, 67:248-266. 10.1159/000194978, 2692835,2692835, 19172084.
-
(2009)
Hum Hered
, vol.67
, pp. 248-266
-
-
Gao, G.1
Allison, D.B.2
Hoeschele, I.3
-
19
-
-
0000803318
-
Construction of multilocus genetic linkage maps in humans.
-
10.1073/pnas.84.8.2363, 304651, 3470801
-
Lander ES, Green P. Construction of multilocus genetic linkage maps in humans. Proc Natl Acad Sci USA 1987, 84:2363-2367. 10.1073/pnas.84.8.2363, 304651, 3470801.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 2363-2367
-
-
Lander, E.S.1
Green, P.2
-
20
-
-
0036338150
-
Merlin - rapid analysis of dense genetic maps using sparse gene flow trees.
-
10.1038/ng786, 11731797
-
Abecasis GR, Cherny SS, Cookson WO, Cardon LR. Merlin - rapid analysis of dense genetic maps using sparse gene flow trees. Nat Genet 2002, 30:97-101. 10.1038/ng786, 11731797.
-
(2002)
Nat Genet
, vol.30
, pp. 97-101
-
-
Abecasis, G.R.1
Cherny, S.S.2
Cookson, W.O.3
Cardon, L.R.4
-
21
-
-
0035071608
-
Efficient multipoint linkage analysis through reduction of inheritance space.
-
10.1086/319507, 1275650, 11254453
-
Markianos K, Daly MJ, Kruglyak L. Efficient multipoint linkage analysis through reduction of inheritance space. Am J Hum Genet 2001, 68:963-977. 10.1086/319507, 1275650, 11254453.
-
(2001)
Am J Hum Genet
, vol.68
, pp. 963-977
-
-
Markianos, K.1
Daly, M.J.2
Kruglyak, L.3
-
22
-
-
0029886532
-
Parametric and nonparametric linkage analysis: a unified multipoint approach.
-
1915045, 8651312
-
Kruglyak L, Daly MJ, Reeve-Daly MP, Lander ES. Parametric and nonparametric linkage analysis: a unified multipoint approach. Am J Hum Genet 1996, 58:1347-1363. 1915045, 8651312.
-
(1996)
Am J Hum Genet
, vol.58
, pp. 1347-1363
-
-
Kruglyak, L.1
Daly, M.J.2
Reeve-Daly, M.P.3
Lander, E.S.4
-
23
-
-
0034098774
-
Allegro, a new computer program for multipoint linkage analysis.
-
10.1038/75514, 10802644
-
Gudbjartsson DF, Jonasson K, Frigge ML, Kong A. Allegro, a new computer program for multipoint linkage analysis. Nat Genet 2000, 25:12-13. 10.1038/75514, 10802644.
-
(2000)
Nat Genet
, vol.25
, pp. 12-13
-
-
Gudbjartsson, D.F.1
Jonasson, K.2
Frigge, M.L.3
Kong, A.4
-
24
-
-
27144455205
-
Allegro version 2.
-
10.1038/ng1005-1015, 16195711
-
Gudbjartsson DF, Thorvaldsson T, Kong A, Gunnarsson G, Ingolfsdottir A. Allegro version 2. Nat Genet 2005, 37:1015-1016. 10.1038/ng1005-1015, 16195711.
-
(2005)
Nat Genet
, vol.37
, pp. 1015-1016
-
-
Gudbjartsson, D.F.1
Thorvaldsson, T.2
Kong, A.3
Gunnarsson, G.4
Ingolfsdottir, A.5
-
25
-
-
0037701006
-
Efficient rule-based haplotyping algorithm for pedigree data.
-
Li J, Jiang T. Efficient rule-based haplotyping algorithm for pedigree data. RECOMB 2003, 197-206.
-
(2003)
RECOMB
, pp. 197-206
-
-
Li, J.1
Jiang, T.2
-
26
-
-
33645216459
-
An exact solution for finding minimum recombinant haplotype configurations on pedigrees with missing data by integer linear programming.
-
Li J, Jiang T. An exact solution for finding minimum recombinant haplotype configurations on pedigrees with missing data by integer linear programming. RECOMB 2004, 101-110.
-
(2004)
RECOMB
, pp. 101-110
-
-
Li, J.1
Jiang, T.2
-
27
-
-
11144292271
-
Recombination rate and reproductive success in humans.
-
10.1038/ng1445, 15467721
-
Kong A, Barnard J, Gudbjartsson DF, Thorleifsson G, Jonsdottir G, Sigurdardottir S, Richardsson B, Jonsdottir J, Thorgeirsson T, Frigge ML, Lamb NE, Sherman S, Gulcher JR, Stefansson K. Recombination rate and reproductive success in humans. Nat Genet 2004, 36:1203-1206. 10.1038/ng1445, 15467721.
-
(2004)
Nat Genet
, vol.36
, pp. 1203-1206
-
-
Kong, A.1
Barnard, J.2
Gudbjartsson, D.F.3
Thorleifsson, G.4
Jonsdottir, G.5
Sigurdardottir, S.6
Richardsson, B.7
Jonsdottir, J.8
Thorgeirsson, T.9
Frigge, M.L.10
Lamb, N.E.11
Sherman, S.12
Gulcher, J.R.13
Stefansson, K.14
-
28
-
-
0031120522
-
Multi-terminal binary decision diagrams: an efficient data structure for matrix representation.
-
Fujita M, McGeer PC, Yang JCY. Multi-terminal binary decision diagrams: an efficient data structure for matrix representation. Formal Methods in System Design 1997, 10:149-169.
-
(1997)
Formal Methods in System Design
, vol.10
, pp. 149-169
-
-
Fujita, M.1
McGeer, P.C.2
Yang, J.C.Y.3
-
29
-
-
18644375829
-
Maximum likelihood haplotyping for general pedigrees.
-
10.1159/000084736, 15802921
-
Fishelson M, Dovgolevsky N, Geiger D. Maximum likelihood haplotyping for general pedigrees. Hum Hered 2005, 59:41-60. 10.1159/000084736, 15802921.
-
(2005)
Hum Hered
, vol.59
, pp. 41-60
-
-
Fishelson, M.1
Dovgolevsky, N.2
Geiger, D.3
-
30
-
-
0031949481
-
Faster multipoint linkage analysis using Fourier transforms.
-
10.1089/cmb.1998.5.1, 9541867
-
Kruglyak L, Lander ES. Faster multipoint linkage analysis using Fourier transforms. J Comput Biol 1998, 5:1-7. 10.1089/cmb.1998.5.1, 9541867.
-
(1998)
J Comput Biol
, vol.5
, pp. 1-7
-
-
Kruglyak, L.1
Lander, E.S.2
-
31
-
-
78650807386
-
Hapi program website.
-
Hapi program website. , http://hapi.csail.mit.edu/
-
-
-
-
32
-
-
48949118889
-
Genomewide linkage scan reveals novel loci modifying age of onset of Huntington's disease in the Venezuelan HD kindreds.
-
Group TUVCR
-
Gayán J, Brocklebank D, Andresen JM, Alkorta-Aranburu G, , Cader MZ, Roberts SA, Cherny SS, Wexler NS, Cardon LR, Housman DE. Group TUVCR Genomewide linkage scan reveals novel loci modifying age of onset of Huntington's disease in the Venezuelan HD kindreds. Genet Epidemiol 2008, 32:445-453. Group TUVCR.
-
(2008)
Genet Epidemiol
, vol.32
, pp. 445-453
-
-
Gayán, J.1
Brocklebank, D.2
Andresen, J.M.3
Alkorta-Aranburu, G.4
Cader, M.Z.5
Roberts, S.A.6
Cherny, S.S.7
Wexler, N.S.8
Cardon, L.R.9
Housman, D.E.10
-
33
-
-
24044550689
-
PEDSTATS: descriptive statistics, graphics and quality assessment for gene mapping data.
-
10.1093/bioinformatics/bti529, 15947021
-
Wigginton JE, Abecasis GR. PEDSTATS: descriptive statistics, graphics and quality assessment for gene mapping data. Bioinformatics 2005, 21:3445-3447. 10.1093/bioinformatics/bti529, 15947021.
-
(2005)
Bioinformatics
, vol.21
, pp. 3445-3447
-
-
Wigginton, J.E.1
Abecasis, G.R.2
-
34
-
-
0032231941
-
PedCheck: a program for identification of genotype incompatibilities in linkage analysis.
-
1377228, 9634505
-
O'Connell JR, Weeks DE. PedCheck: a program for identification of genotype incompatibilities in linkage analysis. Am J Hum Genet 1998, 63:259-266. 1377228, 9634505.
-
(1998)
Am J Hum Genet
, vol.63
, pp. 259-266
-
-
O'Connell, J.R.1
Weeks, D.E.2
-
35
-
-
35248841124
-
Minimum recombinant haplotype configuration on tree pedigrees.
-
Doi K, Li J, Jiang T. Minimum recombinant haplotype configuration on tree pedigrees. WABI 2003, 339-353.
-
(2003)
WABI
, pp. 339-353
-
-
Doi, K.1
Li, J.2
Jiang, T.3
-
36
-
-
78650847941
-
Efficient haplotyping for families.
-
MIT Dept. of EECS
-
Williams AL. Efficient haplotyping for families. PhD thesis 2010, MIT Dept. of EECS.
-
(2010)
PhD thesis
-
-
Williams, A.L.1
|