메뉴 건너뛰기




Volumn 26, Issue 21, 2010, Pages 2684-2688

SLOPE: A quick and accurate method for locating non-SNP structural variation from targeted next-generation sequence data

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; DNA SEQUENCE; GENE TRANSLOCATION; GENOME; METHODOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 77958508815     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq528     Document Type: Article
Times cited : (48)

References (17)
  • 1
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul,S. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
    • (1990) J. Mol. Biol. , vol.215 , pp. 403-410
    • Altschul, S.1
  • 2
    • 69549116107 scopus 로고    scopus 로고
    • BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
    • Chen,K. et al. (2009) BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat. Methods, 6, 677-681.
    • (2009) Nat. Methods , vol.6 , pp. 677-681
    • Chen, K.1
  • 3
    • 63949084660 scopus 로고    scopus 로고
    • Prevalence of Merkel cell polyomavirus in Merkel cell carcinoma
    • Duncavage,E.J. et al. (2009) Prevalence of Merkel cell polyomavirus in Merkel cell carcinoma. Mod. Pathol., 22, 516-521.
    • (2009) Mod. Pathol. , vol.22 , pp. 516-521
    • Duncavage, E.J.1
  • 4
    • 0002344794 scopus 로고
    • Bootstrap methods: another look at the jackknife
    • Efron,B. (1979) Bootstrap methods: another look at the jackknife. Ann. Stat., 7, 1-26.
    • (1979) Ann. Stat. , vol.7 , pp. 1-26
    • Efron, B.1
  • 5
    • 39749113080 scopus 로고    scopus 로고
    • Clonal integration of a polyomavirus in human Merkel cell carcinoma
    • Feng,H. et al. (2008) Clonal integration of a polyomavirus in human Merkel cell carcinoma. Science, 22, 1096-1100.
    • (2008) Science , vol.22 , pp. 1096-1100
    • Feng, H.1
  • 6
    • 77954205450 scopus 로고    scopus 로고
    • Next-generation VariationHunter: Combinatorial algorithms for transposon insertion discovery
    • Hormozdiari,F. et al. (2010) Next-generation VariationHunter: Combinatorial algorithms for transposon insertion discovery. Bioinformatics, 26, i350-i357.
    • (2010) Bioinformatics , vol.26
    • Hormozdiari, F.1
  • 7
    • 62549131646 scopus 로고    scopus 로고
    • PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing
    • Korbel,J.O. et al. (2009) PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing. Genome Biol., 10, R23.
    • (2009) Genome Biol. , vol.10
    • Korbel, J.O.1
  • 8
    • 67649580757 scopus 로고    scopus 로고
    • MoDIL: Detecting small indels from clone-end sequencing with mixtures of distributions
    • Lee,S. et al. (2009) MoDIL: Detecting small indels from clone-end sequencing with mixtures of distributions. Nat. Methods, 6, 473-474.
    • (2009) Nat. Methods , vol.6 , pp. 473-474
    • Lee, S.1
  • 9
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mappings quality scores
    • Li,H. et al. (2008) Mapping short DNA sequencing reads and calling variants using mappings quality scores. Genome Res., 18, 1851-1858.
    • (2008) Genome Res. , vol.18 , pp. 1851-1858
    • Li, H.1
  • 10
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map (SAM) format and SAMtools
    • The 1000 Genome Project Data Processing Subgroup
    • Li,H. et al.; the 1000 Genome Project Data Processing Subgroup (2009) The sequence alignment/map (SAM) format and SAMtools. Bioinformatics, 25, 2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 11
    • 77449121614 scopus 로고    scopus 로고
    • Target-enrichment strategies for next-generation sequencing
    • Mamanova,L. et al. (2010) Target-enrichment strategies for next-generation sequencing. Nat. Methods, 7, 111-118.
    • (2010) Nat. Methods , vol.7 , pp. 111-118
    • Mamanova, L.1
  • 12
    • 52949096084 scopus 로고    scopus 로고
    • Next-generation DNA sequencing methods
    • Mardis,E.R. (2008) Next-generation DNA sequencing methods. Annu. Rev. Genomics Hum. Genet., 9, 387-402.
    • (2008) Annu. Rev. Genomics Hum. Genet. , vol.9 , pp. 387-402
    • Mardis, E.R.1
  • 13
    • 70149093912 scopus 로고    scopus 로고
    • Recurring mutations found by sequencing an acute myeloid leukemia genome
    • Mardis,E. et al. (2009) Recurring mutations found by sequencing an acute myeloid leukemia genome. N. Engl. J. Med., 361, 1058-1066.
    • (2009) N. Engl. J. Med. , vol.361 , pp. 1058-1066
    • Mardis, E.1
  • 14
    • 33947581390 scopus 로고    scopus 로고
    • The impact of translocations and gene fusions on cancer causation
    • Mitelman,F. et al. (2007) The impact of translocations and gene fusions on cancer causation. Nat. Rev. Cancer, 7, 233-245.
    • (2007) Nat. Rev. Cancer , vol.7 , pp. 233-245
    • Mitelman, F.1
  • 15
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith,T.F. and Waterman,M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 16
    • 72949119310 scopus 로고    scopus 로고
    • Complex landscapes of somatic rearrangement in human breast cancer genomes
    • Stephens,P. et al. (2009) Complex landscapes of somatic rearrangement in human breast cancer genomes. Nature, 462, 1005-1010.
    • (2009) Nature , vol.462 , pp. 1005-1010
    • Stephens, P.1
  • 17
    • 70350694443 scopus 로고    scopus 로고
    • Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired short reads
    • Ye,K. et al. (2009) Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired short reads. Bioinformatics, 25, 2865-2871.
    • (2009) Bioinformatics , vol.25 , pp. 2865-2871
    • Ye, K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.