Probing the oxyferrous and catalytically active ferryl states of amphitrite ornata dehaloperoxidase by cryoreduction and EPR/ENDOR spectroscopy. detection of compound i

Journal of the American Chemical Society

Volumn 132, Issue 42, 2010, Pages 14995-15004

  Davydov, Roman ^a   Osborne, Robert L ^b,d   Shanmugam, Muralidharan ^a   Du, Jing ^b   Dawson, John H ^b,c   Hoffman, Brian M ^a  

^a NORTHWESTERN UNIVERSITY   (United States)

^b UNIVERSITY OF SOUTH CAROLINA   (United States)

^c UNIVERSITY OF SOUTH CAROLINA SCHOOL OF MEDICINE   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CATION-RADICALS; COMPOUND I; CONFORMATIONAL SUBSTATES; CRYOREDUCTION; DISTAL POCKET; ENDOR SPECTROSCOPY; EPR SIGNALS; EPR SPECTRA; H-BONDING INTERACTION; HEME PROTEINS; HEMOGLOBIN A; PARAMAGNETIC SPECIES; REACTION MIXTURE; SPECTROSCOPIC PROPERTY; SPIN STATE;

AMINO ACIDS; HEMOGLOBIN; IRON COMPOUNDS; PORPHYRINS; SPIN DYNAMICS;

ELECTRON SPIN RESONANCE SPECTROSCOPY;

2,4,6 TRIFLUOROPHENOL; DEHALOPEROXIDASE; FERROMAGNETIC MATERIAL; FERROUS ION; HEMOGLOBIN; HEMOGLOBIN A; HEMOPROTEIN; MYOGLOBIN; PEROXIDASE; PHENOL DERIVATIVE; PORPHYRIN DERIVATIVE; UNCLASSIFIED DRUG;

AMPHITRITE ORNATA; ANNELID WORM; ARTICLE; BETA CHAIN; CATALYSIS; CONFORMATION; ELECTRON NUCLEAR DOUBLE RESONANCE; ELECTRON SPIN RESONANCE; ELECTRON TRANSPORT; ENVIRONMENTAL TEMPERATURE; HYDROGEN BOND; KINETICS; NONHUMAN; PROTEIN FUNCTION; REACTION ANALYSIS; REDUCTION;

ANIMALS; BASE SEQUENCE; BIOCATALYSIS; DNA PRIMERS; ELECTRON SPIN RESONANCE SPECTROSCOPY; KINETICS; MOLECULAR PROBES; OXIDATION-REDUCTION; PEROXIDASES; POLYCHAETA; SPECTROPHOTOMETRY, ULTRAVIOLET;

EID: 77958479015     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja1059747     Document Type: Article

References (56)

1. Chen, Y.-P., Woodin, S. A., Lincoln, D. E., and Lovell, C. R. J. Biol. Chem. 1996, 271, 4609-4612
2. LaCount, M. W., Zhang, E. L., Chen, Y.-P., Han, K. P., Whitton, M. M., Lincoln, D. E., Woodin, S. A., and Lebioda, L. J. Biol. Chem. 2000, 275, 18712-18716
3. Lebioda, L., LaCount, M. W., Zhang, E., Chen, Y.-P., Han., K. P., Whitton, M. M., Lincoln, D. E., and Woodin, S. A. Nature 1999, 401, 445
4. Roach, M. P., Chen, Y.-P., Woodin, S. A., Lincoln, D. E., Lovell, C. R., and Dawson, J. H. Biochemistry 1997, 36, 2197-2202
5. Franzen, S., Roach, M. P., Chen, Y.-P., Dyer, B. R., Woodruff, W. H., and Dawson, J. H. J. Am. Chem. Soc. 1998, 120, 4658-4661
6. Osborne, R. L., Sumithran, S., Coggins, M. K., Chen, Y.-P., Lincoln, D. E., and Dawson, J. H. J. Inorg. Biochem. 2006, 100, 1100-1108
7. Belyea, J., Belyea, C. M., Lappi, S., and Franzen, S. Biochemistry 2006, 36, 2197-2202
8. Osborne, R. L., Coggins, M. K., Raner, G. M., Walla, M., and Dawson, J. H. Biochemistry 2009, 48, 4231-4238
9. Belyea, J., Gilvey, L. B., Davis, M. F., Godek, M., Sit, T. L., Lommel, S. A., and Franzen, S. Biochemistry 2005, 44, 15637-15644
10. Osborne, R. L., Taylor, L. O., Han, K. P., Ely, B., and Dawson, J. H. Biochem. Biophys. Res. Commun. 2004, 324, 1194-1198
11. Osborne, R. L., Raner, G. M., Hager, L. P., and Dawson, J. H. J. Am. Chem. Soc. 2006, 128, 1036-1037
12. Osborne, R. L., Coggins, M. K., Walla, M., and Dawson, J. H. Biochemistry 2007, 46, 9823-9829
13. Dawson, J. H. Science 1988, 240, 433-439
14. Pond, A. E., Ledbetter, A. P., Sono, M., Goodin, D. B., and Dawson, J. H. Redox Enzymes: Correlation of Three-Dimensional Structure and Mechanism for Heme-Containing Oxygenases and Peroxidases. In Electron Transfer in Chemistry; Balzani, V., Ed.; Wiley VCH Publishers: Weinheim, Germany, 2001; Part III-1, Biological Systems (Gray, H. B. and Winkler, J. R., Eds.), pp 56 - 104.
15. McCarthy, M.-B. and White, R. E. J. Biol. Chem. 1983, 258, 9153-9158
16. Kedderis, G. L., Rickert, D. E., Pandey, R. N., and Hollenberg, P. F. J. Biol. Chem. 1986, 261, 15910-15914
17. Kobayashi, S., Nakano, M., Goto, T., Kimura, T., and Schaap, A. P. Biochem. Biophys. Res. Commun. 1986, 135, 166-171
18. Kobayashi, S., Nakano, M., Kimura, T., and Schaap, A. P. Biochemistry 1987, 26, 5019-5022
19. Ortiz de Montellano, P. R., Choe, Y. S., DePillus, G., and Catalano, C. E. J. Biol. Chem. 1987, 262, 11641-11646
20. Zhang, R., Nagraj, N., Lansakara-P., D. S. P., Hager, L. P., and Newcomb, M. Org. Lett. 2006, 8, 2731-2734
21. Hammel, K. E. and Tardone, P. J. Biochemistry 1988, 27, 6563-6568
22. Ferrari, R. P., Laurenti, E., and Trotta, F. J. Biol. Inorg. Chem. 1999, 4, 232-237
23. Osborne, R. L., Coggins, M. K., Terner, J., and Dawson, J. H. J. Am. Chem. Soc. 2007, 129, 14838-14839
24. Franzen, S., Gilvey, L. B., and Belyea, J. L. Biochem. Biophys. Acta 2007, 1774, 121-130
25. Feducia, J., Dumarieh, R., Gilvey, L. B. G., Smirnova, T., Franzen, S., and Ghiladi, R. A. Biochemistry 2009, 48, 995-1005
26. D'Antonio, J., D'Antonio, E. L., Thompson, M. K., Bowden, E. F., Franzen, S., Smirnova, T., and Ghiladi, R. A. Biochemistry 2010, 49, 6600-6616
27. Paul, K.-G., Theorell, H., and Åkeson, Å. Acta Chem. Scand. 1953, 7, 1284-1287
28. Davydov, R., Makris, T. M., Kofman, V., Werst, D. E., Sligar, S. G., and Hoffman, B. M. J. Am. Chem. Soc. 2001, 123, 1403-1415
29. Lin, Y., Gerfen, G. J., Rousseau, D. L., and Yeah, S. R. Anal. Chem. 2003, 75, 5381-5386
30. Werst, M. M., Davoust, C. E., and Hoffman, B. M. J. Am. Chem. Soc. 1991, 113, 1533-1538
31. Hoffman, B. M., Derose, V. J., Ong, J. L., and Davoust, C. E. J. Magn. Reson. Ser. A 1994, 110, 52-57
32. Benecky, M. J., Frew, J. E., Scowen, N., Jones, P., and Hoffman, B. M. Biochemistry 1993, 32, 11929-11933
33. Patterson, W. R., Poulos, T. L., and Goodin, D. B. Biochemistry 1995, 34, 4342-4345
34. Davydov, R., Kofman, V., Nocek, J. M., Noble, R. W., Hui, H., and Hoffman, B. M. Biochemistry 2004, 43, 6330-6338
35. Hoffman, B. M. Acc. Chem. Res. 1991, 24, 164-170
36. Sakai, T., Ohgo, Y., Ikeue, T., Takahashi, M., Takeda, M., and Nakamura, M. J. Am. Chem. Soc. 2003, 125, 13028-13029
37. Davydov, R., Osborne, R. L., Kim, S. H., Dawson, J. H., and Hoffman, B. M. Biochemistry 2008, 47, 5147-5155
38. Davis, M. F., Gracz, H., Vendeix, F. A. P., deSerrano, V., Somansundaram, A., Decatur, S. M., and Franzen, S. Biochemistry 2009, 48, 2164-2172
39. Davydov, R., Kofman, V., Fujii, H., Yoshida, T., Ikeda-Saito, M., and Hoffman, B. M. J. Am. Chem. Soc. 2002, 124, 1798-1808
40. Roberts, J. E., Hoffman, B. M., Rutter, R., and Hager, L. P. J. Biol. Chem. 1981, 256, 2118-2121
41. Davydov, R. and Hoffman, B. M. J. Biol. Inorg. Chem. 2008, 13, 357-369
42. Smirnova, T. I., Weber, R. T., Davis, M. F., and Franzen, S. J. Am. Chem. Soc. 2008, 130, 2128-2129
43. deSerrano, V., Chen, Z., Davis, M. F., and Franzen, S. Acta Crystallogr. 2007, D63, 1094-1101
44. Chen, Z., deSerrano, V., Betts, L., and Franzen, S. Acta Crystallogr. 2009, D65, 34-40
45. Unno, M., Chen, H., Kusama, S., Shaik, S., and Ikeda-Saito, M. J. Am. Chem. Soc. 2007, 129, 13394-13395
46. Hersleth, H.-P., Hsiao, Y.-W., Ryde, U., Görbitz, C. H., and Anderson, K. K. Biochem. J. 2008, 412, 257-264
47. Nienhaus, K., Deng, P., Belyea, J., Franzen, S., and Nienhaus, G. U. J. Phys. Chem. 2006, B110, 13264-13276
48. Davydov, R., Satterlee, J. D., Fujii, H., Sauer-Masarwa, A., Busch, D. H., and Hoffman, B. M. J. Am. Chem. Soc. 2003, 125, 16340-16346
49. Davydov, R., Chauhan, N., Thackray, S. J., Anderson, J. L. R., Papadopoulou, N. D., Mowat, C. G., Chapman, S. K., Raven, E. L., and Hoffman, B. M. J. Am. Chem. Soc. 2010, 132, 5494-5500
50. Silaghi-Dumitrescu, R. and Cooper, C. E. Dalton Trans. 2005, 3477-3482
51. Park, S.-Y., Yokoyama, T., Shibayama, N., Shiro, Y., and Tame, J. R. H. J. Mol. Biol. 2006, 360, 690-701
52. Jakopitsch, C., Obinger, C., Un, S., and Ivanchich, A. J. Inorg. Biochem. 2006, 100, 1091-1099
53. Hu, C., Sulok, C. D., Paulat, F., Lehnert, N., Twigg, A. I., Hendrich, M. P., Schulz, C. E., and Scheidt, W. R. J. Am. Chem. Soc. 2010, 132, 3737-3750
54. Davis, M. F., Bobay, B. G., and Franzen, S. Biochemistry 2010, 49, 1199-1206
55. Denisov, I. G., Ikeda-Saito, M., Yoshida, T., and Sligar, S. G. FEBS Lett. 2002, 532, 203-206
56. Denisov, I. G., Makris, T. M., and Sligar, S. G. J. Biol. Chem. 2002, 277, 4706-4710