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Volumn 316, Issue 19, 2010, Pages 3150-3160

Measuring topology of low-intensity DNA methylation sites for high-throughput assessment of epigenetic drug-induced effects in cancer cells

Author keywords

3 D image analysis; 5 azacytidine; DNA methylation; Epigenetic drug screening; Heterochromatin reorganization; Zebularine

Indexed keywords

4',6 DIAMIDINO 2 PHENYLINDOLE; 5 METHYLCYTOSINE; AZACITIDINE; ZEBULARINE; ANTINEOPLASTIC AGENT; CYTIDINE; CYTOSINE; DNA; INDOLE DERIVATIVE; PYRIMIDIN-2-ONE BETA-RIBOFURANOSIDE;

EID: 77958152747     PISSN: 00144827     EISSN: 10902422     Source Type: Journal    
DOI: 10.1016/j.yexcr.2010.08.013     Document Type: Article
Times cited : (22)

References (34)
  • 2
    • 33847065486 scopus 로고    scopus 로고
    • The epigenomics of cancer
    • Jones P.A., Baylin S.B. The epigenomics of cancer. Cell 2007, 128:683-692.
    • (2007) Cell , vol.128 , pp. 683-692
    • Jones, P.A.1    Baylin, S.B.2
  • 3
    • 39649122136 scopus 로고    scopus 로고
    • Cancer epigenetics: modifications, screening, and therapy
    • Gal-Yam E.N., Saito Y., Egger G., Jones P.A. Cancer epigenetics: modifications, screening, and therapy. Annu. Rev. Med. 2008, 59:267-280.
    • (2008) Annu. Rev. Med. , vol.59 , pp. 267-280
    • Gal-Yam, E.N.1    Saito, Y.2    Egger, G.3    Jones, P.A.4
  • 4
    • 0034105545 scopus 로고    scopus 로고
    • DNA methylation inhibitors in the treatment of leukemias, myelodysplastic syndromes and hemoglobinopathies: clinical results and possible mechanisms of action
    • Lubbert M. DNA methylation inhibitors in the treatment of leukemias, myelodysplastic syndromes and hemoglobinopathies: clinical results and possible mechanisms of action. Curr. Top. Microbiol. Immunol. 2000, 249:135-164.
    • (2000) Curr. Top. Microbiol. Immunol. , vol.249 , pp. 135-164
    • Lubbert, M.1
  • 5
    • 27644582534 scopus 로고    scopus 로고
    • Antimitogenic and chemosensitizing effects of the methylation inhibitor zebularine in ovarian cancer
    • Balch C., Yan P., Craft T., Young S., Skalnik D.G., Huang T.H., Nephew K.P. Antimitogenic and chemosensitizing effects of the methylation inhibitor zebularine in ovarian cancer. Mol. Cancer Ther. 2005, 4:1505-1514.
    • (2005) Mol. Cancer Ther. , vol.4 , pp. 1505-1514
    • Balch, C.1    Yan, P.2    Craft, T.3    Young, S.4    Skalnik, D.G.5    Huang, T.H.6    Nephew, K.P.7
  • 8
    • 67649460755 scopus 로고    scopus 로고
    • Automated quantification of DNA demethylation effects in cells via 3D mapping of nuclear signatures and population homogeneity assessment
    • Gertych A., Wawrowsky K.A., Lindsley E., Vishnevsky E., Farkas D.L., Tajbakhsh J. Automated quantification of DNA demethylation effects in cells via 3D mapping of nuclear signatures and population homogeneity assessment. Cytom. A 2009, 75:569-583.
    • (2009) Cytom. A , vol.75 , pp. 569-583
    • Gertych, A.1    Wawrowsky, K.A.2    Lindsley, E.3    Vishnevsky, E.4    Farkas, D.L.5    Tajbakhsh, J.6
  • 9
    • 34248223080 scopus 로고    scopus 로고
    • DNA methylation affects nuclear organization, histone modifications, and linker histone binding but not chromatin compaction
    • Gilbert N., Thomson I., Boyle S., Allan J., Ramsahoye B., Bickmore W.A. DNA methylation affects nuclear organization, histone modifications, and linker histone binding but not chromatin compaction. J. Cell Biol. 2007, 177:401-411.
    • (2007) J. Cell Biol. , vol.177 , pp. 401-411
    • Gilbert, N.1    Thomson, I.2    Boyle, S.3    Allan, J.4    Ramsahoye, B.5    Bickmore, W.A.6
  • 10
    • 0028947749 scopus 로고
    • The effects of 5-azacytidine and 5-azadeoxycytidine on chromosome structure and function: implications for methylation-associated cellular processes
    • Haaf T. The effects of 5-azacytidine and 5-azadeoxycytidine on chromosome structure and function: implications for methylation-associated cellular processes. Pharmacol. Ther. 1995, 65:19-46.
    • (1995) Pharmacol. Ther. , vol.65 , pp. 19-46
    • Haaf, T.1
  • 11
    • 0036902097 scopus 로고    scopus 로고
    • The architecture of interphase chromosomes and gene positioning are altered by changes in DNA methylation and histone acetylation
    • Santos A.P., Abranches R., Stoger E., Beven A., Viegas W., Shaw P.J. The architecture of interphase chromosomes and gene positioning are altered by changes in DNA methylation and histone acetylation. J. Cell Sci. 2002, 115:4597-4605.
    • (2002) J. Cell Sci. , vol.115 , pp. 4597-4605
    • Santos, A.P.1    Abranches, R.2    Stoger, E.3    Beven, A.4    Viegas, W.5    Shaw, P.J.6
  • 13
    • 0025806910 scopus 로고
    • DNA methylation and chromatin structure
    • Lewis J., Bird A. DNA methylation and chromatin structure. FEBS Lett. 1991, 285:155-159.
    • (1991) FEBS Lett. , vol.285 , pp. 155-159
    • Lewis, J.1    Bird, A.2
  • 18
    • 33645086120 scopus 로고    scopus 로고
    • Functional diversity of DNA methyltransferase inhibitors in human cancer cell lines
    • Stresemann C., Brueckner B., Musch T., Stopper H., Lyko F. Functional diversity of DNA methyltransferase inhibitors in human cancer cell lines. Cancer Res. 2006, 66:2794-2800.
    • (2006) Cancer Res. , vol.66 , pp. 2794-2800
    • Stresemann, C.1    Brueckner, B.2    Musch, T.3    Stopper, H.4    Lyko, F.5
  • 20
    • 0034654499 scopus 로고    scopus 로고
    • Spatial distribution of GC- and AT-rich DNA sequences within human chromosome territories
    • Tajbakhsh J., Luz H., Bornfleth H., Lampel S., Cremer C., Lichter P. Spatial distribution of GC- and AT-rich DNA sequences within human chromosome territories. Exp. Cell Res. 2000, 255:229-237.
    • (2000) Exp. Cell Res. , vol.255 , pp. 229-237
    • Tajbakhsh, J.1    Luz, H.2    Bornfleth, H.3    Lampel, S.4    Cremer, C.5    Lichter, P.6
  • 21
    • 36048945922 scopus 로고    scopus 로고
    • ImageJ for microscopy
    • Collins T.J. ImageJ for microscopy. Biotechniques 2007, 43:25-30.
    • (2007) Biotechniques , vol.43 , pp. 25-30
    • Collins, T.J.1
  • 25
    • 10644256532 scopus 로고    scopus 로고
    • Zebularine: a new drug for epigenetic therapy
    • Yoo C.B., Cheng J.C., Jones P.A. Zebularine: a new drug for epigenetic therapy. Biochem. Soc. Trans. 2004, 32:910-912.
    • (2004) Biochem. Soc. Trans. , vol.32 , pp. 910-912
    • Yoo, C.B.1    Cheng, J.C.2    Jones, P.A.3
  • 28
    • 0032752799 scopus 로고    scopus 로고
    • Chromosomes as well as chromosomal subdomains constitute distinct units in interphase nuclei
    • Visser A.E., Aten J.A. Chromosomes as well as chromosomal subdomains constitute distinct units in interphase nuclei. J. Cell Sci. 1999, 112(Pt 19):3353-3360.
    • (1999) J. Cell Sci. , vol.112 , Issue.PART 19 , pp. 3353-3360
    • Visser, A.E.1    Aten, J.A.2
  • 31
    • 70349751583 scopus 로고    scopus 로고
    • Epigenetic side-effects of common pharmaceuticals: a potential new field in medicine and pharmacology
    • Csoka A.B., Szyf M. Epigenetic side-effects of common pharmaceuticals: a potential new field in medicine and pharmacology. Med. Hypotheses 2009, 73:770-780.
    • (2009) Med. Hypotheses , vol.73 , pp. 770-780
    • Csoka, A.B.1    Szyf, M.2
  • 33
    • 66449121652 scopus 로고    scopus 로고
    • Finding the fifth base: genome-wide sequencing of cytosine methylation
    • Lister R., Ecker J.R. Finding the fifth base: genome-wide sequencing of cytosine methylation. Genome Res. 2009, 19:959-966.
    • (2009) Genome Res. , vol.19 , pp. 959-966
    • Lister, R.1    Ecker, J.R.2
  • 34
    • 67649854923 scopus 로고    scopus 로고
    • High-throughput bisulfite sequencing in mammalian genomes
    • Smith Z.D., Gu H., Bock C., Gnirke A., Meissner A. High-throughput bisulfite sequencing in mammalian genomes. Methods 2009, 48:226-232.
    • (2009) Methods , vol.48 , pp. 226-232
    • Smith, Z.D.1    Gu, H.2    Bock, C.3    Gnirke, A.4    Meissner, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.