Probing DNA with micro- and nanocapillaries and optical tweezers

Journal of Physics Condensed Matter

Volumn 22, Issue 45, 2010, Pages

  Steinbock, L J ^a   Otto, O ^a   Skarstam, D R ^a   Jahn, S ^a   Chimerel, C ^a   Gornall, J L ^a   Keyser, U F ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DNA MOLECULES; ELECTROPHORETIC FORCE; FLOW CELLS; IONIC CURRENT; NANOCAPILLARIES; PULSE TECHNIQUE; QUARTZ GLASS CAPILLARIES; SOLID-STATE NANOPORE;

BLOOD VESSELS; CAPILLARITY; DNA; OPTICAL INSTRUMENTS; QUARTZ;

OPTICAL TWEEZERS;

DNA; NANOMATERIAL;

ARTICLE; CAPILLARY ELECTROPHORESIS; CHEMISTRY; GENETIC PROCEDURES; METHODOLOGY; OPTICAL TWEEZERS; POROSITY; SURFACE PROPERTY; ULTRASTRUCTURE;

CAPILLARITY; DNA; ELECTROPHORESIS, CAPILLARY; MOLECULAR PROBE TECHNIQUES; NANOSTRUCTURES; OPTICAL TWEEZERS; POROSITY; SURFACE PROPERTIES;

EID: 77958124878     PISSN: 09538984     EISSN: 1361648X     Source Type: Journal    
DOI: 10.1088/0953-8984/22/45/454113     Document Type: Article

References (40)

1. Bayley H and Martin C R 2000 Resistive-pulse sensing-from microbes to molecules Chem. Rev. 100 2575-94
2. Dekker C 2007 Solid-state nanopores Nat. Nanotechnol. 2 209-15
3. Wallace C H 1953 Means for counting particles suspended in a fluid US Patent 2656508
4. Keyser U F, Van Dorp S and Lemay S G 2010 Tether forces in DNA electrophoresis-a tutorial review Chem. Soc. Rev. 39 939-47
5. Bezrukov S M 2000 Ion channels as molecular coulter counters to probe metabolite transport J. Membr. Biol. 174 1-13
6. Kubitschek H E 1958 Electronic counting and sizing of bacteria Nature 182 234-5
7. Bean C P and DeBlois R W 1970 Counting and sizing of submicron particles by the resistive pulse technique Rev. Sci. Instrum. 41 909
8. Karuhn R, Davies R, Kaye B H and Clinch M J 1975 Studies on the Coulter counter part I. Investigation into the effect of orifice geometry and flow direction on the measurement of particle volume Powder Technol. 11 157-71
9. Davies R, Karuhn R, Graf J and Stockham J 1975 The rapid counting and sizing of fibers in a mixture using an IITRI-modified Coulter counter Am. Ind. Hyg. Assoc. J. 36 825-32
10. Zhang Z, Zhe J, Chandra S and Hu J 2005 An electronic pollen detection method using Coulter counting principle Atmos. Environ. 39 5446-53
11. DeBlois R W andWesley R K 1977 Sizes and concentrations of several type C oncornaviruses and bacteriophage T2 by the resistive-pulse technique J. Virol. 23 227-33
12. Chang H, Kosari F, Andreadakis G, Alam M A, Vasmatzis G and Bashir R 2004 DNA-mediated fluctuations in ionic current through silicon oxide nanopore channels Nano Lett. 4 1551-6
13. Fan R, Karnik R, Yue M, Li D Y, Majumdar A and Yang P D 2005 DNA translocation in inorganic nanotubes Nano Lett. 5 1633-7
14. Lee G, Chrisey L and Colton R 1994 Direct measurement of the forces between complementary strands of DNA Science 266 771-3
15. Smith S B, Cui Y and Bustamante C 1996 Overstretching b-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules Science 271 795-9
16. Keyser U F, Koeleman B N, van Dorp S, Krapf D, Smeets R M M, Lemay S, Dekker N H and Dekker C 2006 Direct force measurements on DNA in a solid-state nanopore Nat. Phys. 2 473-7 (Pubitemid 44022563)
17. van Dorp S, Keyser U F, Dekker N H, Dekker C and Lemay S G 2009 Origin of the electrophoretic force in nanopores Nat. Phys. 5 347
18. Ying L, White S S, Bruckbauer A, Meadows L, Korchev Y E and Klenerman D 2004 Frequency and voltage dependence of the dielectrophoretic trapping of short lengths of DNA and dCTP in a nanopipette Biophys. J. 86 1018-27
19. Lieberman K, Lewis A, Fish G, Shalom S, Jovin T M, Schaper A and Cohen S R 1994 Multifunctional, micropipette based force cantilevers for scanned probe microscopy Appl. Phys. Lett. 65 648
20. Gao C, Ding S, Tan Q and Gu L 2009 Method of creating a nanopore-terminated probe for single-molecule enantiomer discrimination Anal. Chem. 81 80-6
21. Zhang B, Wood M and Lee H 2009 A silica nanochannel and its applications in sensing and molecular transport Anal. Chem. 81 5541-8
22. KarhanekM, Kemp J T, Pourmand N, Davis R W and Webb C D 2005 Single DNA molecule detection using nanopipettes and nanoparticles Nano Lett. 5 403-7
23. Steinbock L J, Stober G and Keyser U F 2009 Sensing DNA-coatings of microparticles using micropipettes Biosens. Bioelectron. 24 2423-7
24. Stober G, Steinbock L J and Keyser U F 2009 Modeling of colloidal transport in capillaries J. Appl. Phys. 105 084702
25. Li J, Gershow M, Stein D, Brandin E and Golovchenko J A 2003 DNA molecules and configurations in a solid-state nanopore microscope Nat. Mater. 2 611-5
26. Storm A, Chen J, Zandbergen H and Dekker C 2005 Translocation of double-strand DNA through a silicon oxide nanopore Phys. Rev. E 71 051903
27. Keyser U F, van der Does J, Dekker C and Dekker N H 2009 Inserting and manipulating DNA in a nanopore with optical tweezers Methods Mol. Biol. 544 95-112
28. Schmatko T, Bozorgui B, Geerts N, Frenkel D, Eiser E and Poon W C K 2007 A finite-cluster phase in λ-DNA-coated colloids Soft Matter 3 703
29. Neuman K C and Block S M 2004 Optical trapping Rev. Sci. Instrum. 75 2787-809
30. Perkins T T 2009 Optical traps for single molecule biophysics: a primer Laser Photon. Rev. 3 203-20
31. Hale G M and Querry M R 1973 Optical constants of water in the 200 nm to 200 μm wavelength region Appl. Opt. 12 555-63
32. Liu Y, Cheng D, Sonek G, Berns M, Chapman C and Tromberg B 1995 Evidence for localized cell heating induced by infrared optical tweezers Biophys. J. 68 2137-44
33. Keyser U F, Krapf D, Koeleman B N, Smeets R M M, Dekker N H and Dekker C 2005 Nanopore tomography of a laser focus Nano Lett. 5 2253-6
34. Otto O, Gutsche C, Kremer F and Keyser U F 2008 Optical tweezers with 2.5 kHz bandwidth video detection for single-colloid electrophoresis Rev. Sci. Instrum. 79 023710
35. Semenov I, Otto O, Stober G, Papadopoulos P, Keyser U F and Kremer F 2009 Single colloid electrophoresis J. Colloid Interface Sci. 337 260-4
36. Siwy Z, Gu Y, Spohr H A, Baur D, Wolf-Reber A, Spohr R, Apel P and Korchev Y E 2002 Rectification and voltage gating of ion currents in a nanofabricated pore Europhys. Lett. 60 349-55
37. DeSorboW 1979 Ultraviolet effects and aging effects on etching characteristics of fission tracks in polycarbonate film Nucl. Tracks 3 13-32
38. Keyser U F, van der Does J, Dekker C and Dekker N H 2006 Optical tweezers for force measurements on DNA in nanopores Rev. Sci. Instrum. 77 105105
39. Smeets R M M, Keyser U F, Krapf D, Wu M, Dekker N H and Dekker C 2006 Salt dependence of ion transport and DNA translocation through solid-state nanopores Nano Lett. 6 89-95
40. Steinbock L J, Otto O, Chimerel C, Gornall J and Keyser U F 2010 Detecting DNA folding with nanocapillaries Nano Lett. 10 2493-7