메뉴 건너뛰기




Volumn 27, Issue 11, 2010, Pages 2651-2664

Tracing the evolution of the floral homeotic B-and C-function genes through genome synteny

Author keywords

B function; C function; comparative genomics; evolution; synteny

Indexed keywords

ARABIDOPSIS; ARTICLE; COMPARATIVE GENOMIC HYBRIDIZATION; FLOWER; FLOWER DEVELOPMENT; GENE FUNCTION; GENE LOCUS; GENE REARRANGEMENT; GENE SEQUENCE; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PAPAYA; PHYLOGENETIC TREE; PLANT GENE; REGULATOR GENE; SPECIES DIFFERENCE; SYNTENY;

EID: 77958115727     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msq156     Document Type: Article
Times cited : (38)

References (57)
  • 1
    • 38649126924 scopus 로고    scopus 로고
    • B-class MADS-box genes in trioecious papaya: Two paleoAP3 paralogs, CpTM6-1 and CpTM6-2, and a PI ortholog CpPI
    • Ackerman CM, Yu Q, Kim S, Paull RE, Moore PH, Ming R. 2008. B-class MADS-box genes in trioecious papaya: two paleoAP3 paralogs, CpTM6-1 and CpTM6-2, and a PI ortholog CpPI. Planta 227:741-753.
    • (2008) Planta , vol.227 , pp. 741-753
    • Ackerman, C.M.1    Yu, Q.2    Kim, S.3    Paull, R.E.4    Moore, P.H.5    Ming, R.6
  • 2
    • 0033805245 scopus 로고    scopus 로고
    • Nuclear DNA amounts in angiosperms and their modern uses\807 new estimates
    • Bennett MD, Bhandol P, Leitch IJ. 2000. Nuclear DNA amounts in angiosperms and their modern uses\807 new estimates. Ann Bot. 86:859-909.
    • (2000) Ann Bot , vol.86 , pp. 859-909
    • Bennett, M.D.1    Bhandol, P.2    Leitch, I.J.3
  • 4
    • 0033891353 scopus 로고    scopus 로고
    • Extensive duplication and reshuffling in the Arabidopsis genome
    • Blanc G, Barakat A, Guyot R, Cooke R, Delseny M. 2000. Extensive duplication and reshuffling in the Arabidopsis genome. Plant Cell. 12:1093-1101.
    • (2000) Plant Cell , vol.12 , pp. 1093-1101
    • Blanc, G.1    Barakat, A.2    Guyot, R.3    Cooke, R.4    Delseny, M.5
  • 5
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • Burge C, Karlin S. 1997. Prediction of complete gene structures in human genomic DNA. J Mol Biol. 268:78-94.
    • (1997) J Mol Biol , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 6
    • 16544383364 scopus 로고    scopus 로고
    • Comparative sequence analysis of the region harboring the hardness locus in barley and its colinear region in rice
    • Caldwell KS, Langridge P, Powell W. 2004.Comparative sequence analysis of the region harboring the hardness locus in barley and its colinear region in rice. Plant Physiol. 136:3177-3190.
    • (2004) Plant Physiol , vol.136 , pp. 3177-3190
    • Caldwell, K.S.1    Langridge, P.2    Powell, W.3
  • 7
    • 0037633476 scopus 로고    scopus 로고
    • Plant LTR-retrotransposons and MITEs: Control of transposition and impact on the evolution of plant genes and genomes
    • Casacuberta JM, Santiago N. 2003. Plant LTR-retrotransposons and MITEs: control of transposition and impact on the evolution of plant genes and genomes. Gene 311:1-11.
    • (2003) Gene , vol.311 , pp. 1-11
    • Casacuberta, J.M.1    Santiago, N.2
  • 10
    • 2442517979 scopus 로고    scopus 로고
    • Dating the monocotdicot divergence and the origin of core eudicots using whole chloroplast genomes
    • Chaw SM, Chang CC, Chen HL, Li WH. 2004. Dating the monocotdicot divergence and the origin of core eudicots using whole chloroplast genomes. J Mol Evol. 58:424-441.
    • (2004) J Mol Evol , vol.58 , pp. 424-441
    • Chaw, S.M.1    Chang, C.C.2    Chen, H.L.3    Li, W.H.4
  • 11
    • 0033831711 scopus 로고    scopus 로고
    • Minimal regions in the Arabidopsis PISTILLATA promoter responsive to the APET, ALA3/PISTILLATA feedback control do not contain a CArG box
    • Chen X, Riechmann JL, Jia D, Meyerowitz E. 2000. Minimal regions in the Arabidopsis PISTILLATA promoter responsive to the APET ALA3/PISTILLATA feedback control do not contain a CArG box. Sex Plant Reprod. 13:85-94.
    • (2000) Sex Plant Reprod , vol.13 , pp. 85-94
    • Chen, X.1    Riechmann, J.L.2    Jia, D.3    Meyerowitz, E.4
  • 12
    • 0026417225 scopus 로고
    • The war of the whorls: Genetic interactions controlling flower development
    • Coen ES, Meyerowitz EM. 1991. The war of the whorls: genetic interactions controlling flower development. Nature 353: 31-37.
    • (1991) Nature , vol.353 , pp. 31-37
    • Coen, E.S.1    Meyerowitz, E.M.2
  • 13
    • 0033565284 scopus 로고    scopus 로고
    • PLENA and FARINELLI: Redundancy and regulatory interactions between two Antirrhinum MADS-box factors controlling flower development
    • Davies B, Motte P, Keck E, Saedler H, Sommer H, Schwarz Sommer Z. 1999. PLENA and FARINELLI: redundancy and regulatory interactions between two Antirrhinum MADS-box factors controlling flower development. EMBOJ. 18:4023-4034.
    • (1999) EMBOJ , vol.18 , pp. 4023-4034
    • Davies, B.1    Motte, P.2    Keck, E.3    Saedler, H.4    Sommer, H.5    Schwarz Sommer, Z.6
  • 14
    • 33747481316 scopus 로고    scopus 로고
    • Functional analyses of two tomato APET, ALA 3 genes demonstrate diversification in their roles in regulating floral development
    • de Martino G, Pan I, Emmanuel E, Levy A, Irish VF. 2006. Functional analyses of two tomato APET ALA3 genes demonstrate diversification in their roles in regulating floral development. Plant Cell. 18:1833-1845.
    • (2006) Plant Cell , vol.18 , pp. 1833-1845
    • De Martino, G.1    Pan, I.2    Emmanuel, E.3    Levy, A.4    Irish, V.F.5
  • 15
    • 0034691159 scopus 로고    scopus 로고
    • Transposons and genome evolution in plants
    • Fedoroff N. 2000. Transposons and genome evolution in plants. Proc Natl Acad Sci USA. 97:7002-7007.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 7002-7007
    • Fedoroff, N.1
  • 16
    • 0036250001 scopus 로고    scopus 로고
    • Plant transposable elements: Where genetics meets genomics
    • Feschotte C, Jiang N, Wessler SR 2002. Plant transposable elements: where genetics meets genomics. Nat Rev Genet. 3: 329-341.
    • (2002) Nat Rev Genet , vol.3 , pp. 329-341
    • Feschotte, C.1    Jiang, N.2    Wessler, S.R.3
  • 18
    • 33750606842 scopus 로고    scopus 로고
    • Duplication, diversification, and comparative genetics of angiosperm MADS-box genes
    • Irish VF. 2006. Duplication, diversification, and comparative genetics of angiosperm MADS-box genes. Adv Bot Res. 44:129-161.
    • (2006) Adv Bot Res , vol.44 , pp. 129-161
    • Irish, V.F.1
  • 19
    • 22144453496 scopus 로고    scopus 로고
    • Flower development and evolution: Gene duplication, diversification and redeployment
    • Irish VF, Litt A. 2005. Flower development and evolution: gene duplication, diversification and redeployment. Curr Opin Genet Dev. 15:454-460.
    • (2005) Curr Opin Genet Dev , vol.15 , pp. 454-460
    • Irish, V.F.1    Litt, A.2
  • 20
    • 0026532893 scopus 로고
    • The homeotic gene APET, ALA3 of Arabidopsis thaliana encodes a MADS box and is expressed in pet als and stamens
    • Jack T, Brockman LL, Meyerowitz EM. 1992. The homeotic gene APET ALA3 of Arabidopsis thaliana encodes a MADS box and is expressed in pet als and stamens. Cell 68:683-697.
    • (1992) Cell , vol.68 , pp. 683-697
    • Jack, T.1    Brockman, L.L.2    Meyerowitz, E.M.3
  • 21
    • 0036021699 scopus 로고    scopus 로고
    • Transposable elements and the evolution of genome size in eukaryotes
    • Kidwell MG. 2002. Transposable elements and the evolution of genome size in eukaryotes. Genetica 115:49-63.
    • (2002) Genetica , vol.115 , pp. 49-63
    • Kidwell, M.G.1
  • 22
    • 15944381065 scopus 로고    scopus 로고
    • Phylogeny and diversification of B-function genes in angiosperms: Evolutionary and functional implications of a 260-million year old duplication
    • Kim S, Yoo M, Albert VA, Farris JS, Soltis PS, Soltis DE. 2004. Phylogeny and diversification of B-function genes in angiosperms: evolutionary and functional implications of a 260-million year old duplication. Am J Bot. 91:2102-2118.
    • (2004) Am J Bot , vol.91 , pp. 2102-2118
    • Kim, S.1    Yoo, M.2    Albert, V.A.3    Farris, J.S.4    Soltis, P.S.5    Soltis, D.E.6
  • 23
    • 0031799916 scopus 로고    scopus 로고
    • Molecular evolution of genes controlling pet al and stamen development: Duplication and divergence within the APET, ALA3 and PISTILLATA MADS-box gene lineages
    • Kramer EM, Dorit RL, Irish VF. 1998. Molecular evolution of genes controlling pet al and stamen development: duplication and divergence within the APET ALA3 and PISTILLATA MADS-box gene lineages. Genetics 149:765-783.
    • (1998) Genetics , vol.149 , pp. 765-783
    • Kramer, E.M.1    Dorit, R.L.2    Irish, V.F.3
  • 24
    • 1642305995 scopus 로고    scopus 로고
    • Patterns of gene duplication and functional evolution during the diversification of the AGAMOUS subfamily of MADS box genes in angiosperms
    • Kramer EM, Jaramillo MA, Di Stilio VS. 2004. Patterns of gene duplication and functional evolution during the diversification of the AGAMOUS subfamily of MADS box genes in angiosperms. Genetics 166:1011-1023.
    • (2004) Genetics , vol.166 , pp. 1011-1023
    • Kramer, E.M.1    Ma, J.2    Di Stilio, V.S.3
  • 25
    • 0034255126 scopus 로고    scopus 로고
    • Comparing sequenced segments of the tomato and Arabidopsis genomes: Large-scale duplication followed by selective gene loss creates a network of synteny
    • Ku HM, Vision T, Liu J, Tanksley SD. 2000.Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny. Proc Natl Acad Sci USA. 97:9121-9126.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 9121-9126
    • Ku, H.M.1    Vision, T.2    Liu, J.3    Tanksley, S.D.4
  • 28
    • 33846238139 scopus 로고    scopus 로고
    • An evaluation of the A-function: Evidence from the APET, ALA1 and APET ALA2 gene lineages
    • Litt A. 2007. An evaluation of the A-function: evidence from the APET ALA1 and APET ALA2 gene lineages. Int J Plant Sci. 168: 73-91.
    • (2007) Int J Plant Sci. , vol.168 , pp. 73-91
    • Litt, A.1
  • 29
    • 0032519353 scopus 로고    scopus 로고
    • Gene Mark. hmm: New solutions for gene finding
    • Lukashin AV, Borodovsky M. 1998. Gene Mark. hmm: new solutions for gene finding. Nucleic Acids Res. 26:1107-1115.
    • (1998) Nucleic Acids Res , vol.26 , pp. 1107-1115
    • Lukashin, A.V.1    Borodovsky, M.2
  • 30
    • 0345255239 scopus 로고    scopus 로고
    • Adaptive evolution in the Arabidopsis MADS-box gene family inferred from its complete resolved phylogeny
    • Mart́inez-Castilla LP, Alvarez-Buylla ER. 2003. Adaptive evolution in the Arabidopsis MADS-box gene family inferred from its complete resolved phylogeny. Proc Natl Acad Sci USA. 100: 13407-13412.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 13407-13412
    • Mart́inez-Castilla, L.P.1    Alvarez-Buylla, E.R.2
  • 32
    • 0026162046 scopus 로고
    • Characterization of the level, target sites and inheritance of cytosine methylation in tomato nuclear DNA
    • Messeguer R Ganal MW, Steffens JC, Tanksley SD. 1991. Characterization of the level, target sites and inheritance of cytosine methylation in tomato nuclear DNA Plant Mol Biol. 16:753-770.
    • (1991) Plant Mol Biol , vol.16 , pp. 753-770
    • Messeguer Ganal R, M.W.1    Steffens, J.C.2    Tanksley, S.D.3
  • 34
    • 0037371689 scopus 로고    scopus 로고
    • Evidence for co-evolution of gene order and recombination rate
    • Pál C, Hurst LD. 2003. Evidence for co-evolution of gene order and recombination rate. Nat Genet. 33:392-395.
    • (2003) Nat Genet , vol.33 , pp. 392-395
    • Pál, C.1    Hurst, L.D.2
  • 35
    • 19244384030 scopus 로고    scopus 로고
    • Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: New openings to the MADS world
    • (12 co-authors)
    • Parenicová L, de Folter S, Kieffer M, et al. (12 co-authors). 2003. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell. 15:1538-1551.
    • (2003) Plant Cell , vol.15 , pp. 1538-1551
    • Parenicová, L.1    De Folter, S.2    Kieffer, M.3
  • 36
    • 0038602794 scopus 로고    scopus 로고
    • Assessing the redundancy of MADS-box genes during carpel and ovule development
    • DOI 10.1038/nature01741
    • Pinyopich A, Ditta GS, Savidge B, Liljegren SJ, Baumann E, Wisman E, Yanofsky MF. 2003. Assessing the redundancy of MADS-box genes during carpel and ovule development. Nature 424:85-88. (Pubitemid 36834846)
    • (2003) Nature , vol.424 , Issue.6944 , pp. 85-88
    • Pinyopich, A.1    Ditta, G.S.2    Savidge, B.3    Liljegren, S.J.4    Baumann, E.5    Wisman, E.6    Yanofsky, M.F.7
  • 37
    • 35248870127 scopus 로고    scopus 로고
    • Isolation of the three grape sub-lineages of B-class MADS-box TM6, PISTILLATA and APET, ALA3 genes which are differentially expressed during flower and fruit development
    • Poupin MJ, Federici F, Medina C, Matus JT, Timmermann T, Arce-Johnson P. 2007. Isolation of the three grape sub-lineages of B-class MADS-box TM6, PISTILLATA and APET ALA3 genes which are differentially expressed during flower and fruit development. Gene 404:10-24.
    • (2007) Gene , vol.404 , pp. 10-24
    • Poupin, M.J.1    Federici, F.2    Medina, C.3    Matus, J.T.4    Timmermann, T.5    Arce-Johnson, P.6
  • 38
    • 0028940289 scopus 로고
    • Molecular evolution of flower development: Diversification of the plant MADS-box regulatory gene family
    • Purugganan MD, Rounsley SD, Schmidt RJ, Yanofsky MF. 1995. Molecular evolution of flower development: diversification of the plant MADS-box regulatory gene family. Genetics 140: 345-356.
    • (1995) Genetics , vol.140 , pp. 345-356
    • Purugganan, M.D.1    Rounsley, S.D.2    Schmidt, R.J.3    Yanofsky, M.F.4
  • 40
    • 47249151337 scopus 로고    scopus 로고
    • Analysis of genome organization, composition and microsynteny using 500 kb BAC sequences in chickpea
    • Rajesh PN, O'Bleness M, Roe BA, Muehlbauer FJ. 2008. Analysis of genome organization, composition and microsynteny using 500 kb BAC sequences in chickpea. Theor Appl Genet. 117: 449-458.
    • (2008) Theor Appl Genet , vol.117 , pp. 449-458
    • Rajesh, P.N.1    O'Bleness, M.2    Roe, B.A.3    Muehlbauer, F.J.4
  • 44
    • 0042766479 scopus 로고    scopus 로고
    • An everlasting pioneer: The story of Antirrhinum research
    • Schwarz-Sommer Z, Davies B, Hudson A. 2003. An everlasting pioneer: the story of Antirrhinum research. Nat Rev Genet. 4: 657-666.
    • (2003) Nat Rev Genet , vol.4 , pp. 657-666
    • Schwarz-Sommer, Z.1    Davies, B.2    Hudson, A.3
  • 45
    • 0000560985 scopus 로고
    • Genetic control of flower development by homeotic genes in Antirrhinum majus
    • Schwarz-Sommer Z, Huijser P, Nacken W, Saedler H, Sommer H. 1990. Genetic control of flower development by homeotic genes in Antirrhinum majus. Science 250:931-936.
    • (1990) Science , vol.250 , pp. 931-936
    • Schwarz-Sommer, Z.1    Huijser, P.2    Nacken, W.3    Saedler, H.4    Sommer, H.5
  • 47
    • 0025091858 scopus 로고
    • Deficiens, a homeotic gene involved in the control offlower morphogenesis in Antirrhinum majus: The protein shows homology to transcription factors
    • Sommer H, Beltrán JP, Huijser P,Pape H, Lönnig WE, Saedler H, Schwarz-Sommer Z. 1990. Deficiens, a homeotic gene involved in the control offlower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors. EMBOJ. 9:605-613.
    • (1990) EMBOJ , vol.9 , pp. 605-613
    • Sommer, H.1    Beltrán, J.P.2    Huijser Ppape, H.3    Lönnig, W.E.4    Saedler, H.5    Schwarz-Sommer, Z.6
  • 49
    • 57149102681 scopus 로고    scopus 로고
    • Unraveling ancient hexaploidy through multiply-aligned angio-sperm gene maps
    • Tang H, Wang X, Bowers JE, Ming R, Alam M, Paterson AH. 2008b. Unraveling ancient hexaploidy through multiply-aligned angio-sperm gene maps. Genome Res. 18:1944-1954.
    • (2008) Genome Res , vol.18 , pp. 1944-1954
    • Tang, H.1    Wang, X.2    Bowers, J.E.3    Ming, R.4    Alam, M.5    Paterson, A.H.6
  • 51
    • 0043163785 scopus 로고    scopus 로고
    • Structural diversification and neo-functionalization during floral MADS-box gene evolution by C-terminal frameshift mutations
    • Vandenbussche M, Theissen G, Van de Peer Y, Gerats T. 2003. Structural diversification and neo-functionalization during floral MADS-box gene evolution by C-terminal frameshift mutations. Nucleic Acids Res. 31:4401-4409.
    • (2003) Nucleic Acids Res , vol.31 , pp. 4401-4409
    • Vandenbussche, M.1    Theissen, G.2    Van De Peer, Y.3    Gerats, T.4
  • 52
    • 28444443384 scopus 로고    scopus 로고
    • Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments
    • Wang Y, van der Hoeven RS, Nielsen R, Mueller LA, Tanksley SD. 2005. Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor Appl Genet. 112:72-84.
    • (2005) Theor Appl Genet , vol.112 , pp. 72-84
    • Wang, Y.1    Van Der Hoeven, R.S.2    Nielsen, R.3    Mueller, L.A.4    Tanksley, S.D.5
  • 53
    • 0028142020 scopus 로고
    • The ABCs of floral homeotic genes
    • Weigel D, Meyerowitz EM. 1994. The ABCs of floral homeotic genes. Cell 78:203-209.
    • (1994) Cell , vol.78 , pp. 203-209
    • Weigel, D.1    Meyerowitz, E.M.2
  • 55
    • 33645752186 scopus 로고    scopus 로고
    • Functional diversification of the two C-class MADS box genes OSMADS3 and OSMADS58 in Oryza sativa
    • Yamaguchi T, Lee DY, Miyao A, Hirochika H, An G, Hirano HY. 2006. Functional diversification of the two C-class MADS box genes OSMADS3 and OSMADS58 in Oryza sativa. Plant Cell. 18:15-28.
    • (2006) Plant Cell , vol.18 , pp. 15-28
    • Yamaguchi, T.1    Lee, D.Y.2    Miyao, A.3    Hirochika, H.4    An, G.5    Hirano, H.Y.6
  • 56
    • 67649832724 scopus 로고    scopus 로고
    • Floral MADS-box genes in trioecious papaya: Characterization of AG and AP1 subfamily genes revealed a sex-type-specific gene
    • Yu Q, Steiger D, Kramer EM, Moore PH, Ming R. 2008. Floral MADS-box genes in trioecious papaya: characterization of AG and AP1 subfamily genes revealed a sex-type-specific gene. Trop Plant Biol. 1:97-107.
    • (2008) Trop Plant Biol , vol.1 , pp. 97-107
    • Yu, Q.1    Steiger, D.2    Kramer, E.M.3    Moore, P.H.4    Ming, R.5
  • 57
    • 0344099519 scopus 로고    scopus 로고
    • Structural and transcriptional analysis of S-locus F-box genes in Antirrhinum
    • Zhou J, Wang F, Ma W, Zhang Y, Han B, Xue Y. 2003. Structural and transcriptional analysis of S-locus F-box genes in Antirrhinum. Sex Plant Reprod. 16:165-177.
    • (2003) Sex Plant Reprod , vol.16 , pp. 165-177
    • Zhou, J.1    Wang, F.2    Ma, W.3    Zhang, Y.4    Han, B.5    Xue, Y.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.