메뉴 건너뛰기




Volumn 17, Issue 9, 2010, Pages 1145-1165

The solution space of sorting by DCJ

Author keywords

algorithms; combinatorics; evolution; genomic rearrangements

Indexed keywords

ALGORITHM; ANIMAL; ARTICLE; BIOLOGICAL MODEL; GENE REARRANGEMENT; GENOME; HUMAN; MOLECULAR EVOLUTION; NUCLEOTIDE SEQUENCE;

EID: 77958067329     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2010.0109     Document Type: Article
Times cited : (50)

References (13)
  • 1
    • 66049158304 scopus 로고    scopus 로고
    • Breakpoint graphs and ancestral genome reconstructions
    • Alekseyev, M. A., and Pevzner, P. A. 2009. Breakpoint graphs and ancestral genome reconstructions. Genome Res. 19, 943-957.
    • (2009) Genome Res. , vol.19 , pp. 943-957
    • Alekseyev, M.A.1    Pevzner, P.A.2
  • 2
    • 15344349176 scopus 로고    scopus 로고
    • On the properties of sequences of reversals that sort a signed permutation
    • Bergeron, A., Chauve, C., Hartmann, T., et al. 2002. On the properties of sequences of reversals that sort a signed permutation. Proc. JOBIM 2002 99-108.
    • (2002) Proc. JOBIM 2002 , pp. 99-108
    • Bergeron, A.1    Chauve, C.2    Hartmann, T.3
  • 4
    • 49249120896 scopus 로고    scopus 로고
    • Exploring the solution space of sorting by reversals with experiments and an application to evolution
    • Braga, M. D. V., Sagot, M.-F., Scornavacca, C., et al. 2008. Exploring the solution space of sorting by reversals with experiments and an application to evolution. IEEE/ACM Trans. Comput. Biol. Bioinform. 5, 348-356.
    • (2008) IEEE/ACM Trans. Comput. Biol. Bioinform , vol.5 , pp. 348-356
    • Braga, M.D.V.1    Sagot, M.-F.2    Scornavacca, C.3
  • 5
    • 77958033601 scopus 로고    scopus 로고
    • Counting all DCJ sorting scenarios
    • Braga, M. D. V., and Stoye, J. 2009. Counting all DCJ sorting scenarios. Lect. Notes Bioinform. 5817, 36-47.
    • (2009) Lect. Notes Bioinform , vol.5817 , pp. 36-47
    • Braga, M.D.V.1    Stoye, J.2
  • 7
    • 0029493079 scopus 로고
    • Transforming men into mice (polynomial algorithm for genomic distance problem)
    • Hannenhalli, S., and Pevzner, P. 1995. Transforming men into mice (polynomial algorithm for genomic distance problem). Proc. FOCS 1995 581-592.
    • (1995) Proc. FOCS 1995 , pp. 581-592
    • Hannenhalli, S.1    Pevzner, P.2
  • 8
    • 78651235607 scopus 로고    scopus 로고
    • Parking functions, labeled trees and DCJ sorting scenarios
    • Ouangraoua, A., and Bergeron, A. 2010. Parking functions, labeled trees and DCJ sorting scenarios. Lect. Notes Bioinform. 5817, 24-35.
    • (2010) Lect. Notes Bioinform , vol.5817 , pp. 24-35
    • Ouangraoua, A.1    Bergeron, A.2
  • 9
    • 84957615807 scopus 로고
    • Edit distance for genome comparison based on non-local operations
    • Sankoff, D. 1992. Edit distance for genome comparison based on non-local operations. Lect. Notes Comput. Sci. 644, 121-135.
    • (1992) Lect. Notes Comput. Sci. , vol.644 , pp. 121-135
    • Sankoff, D.1
  • 10
    • 0242690450 scopus 로고    scopus 로고
    • An algorithm to enumerate sorting reversals for signed permutations
    • Siepel, A. 2003. An algorithm to enumerate sorting reversals for signed permutations. J. Comput. Biol. 10, 575-597.
    • (2003) J. Comput. Biol. , vol.10 , pp. 575-597
    • Siepel, A.1
  • 11
    • 65849156401 scopus 로고    scopus 로고
    • Multichromosomal median and halving problems under different genomic distances
    • Tannier, E., Zheng, C., and Sankoff, D. 2009. Multichromosomal median and halving problems under different genomic distances. BMC Bioinform. 10, 120.
    • (2009) BMC Bioinform , vol.10 , pp. 120
    • Tannier, E.1    Zheng, C.2    Sankoff, D.3
  • 12
    • 24044535485 scopus 로고    scopus 로고
    • Efficient sorting of genomic permutations by translocation, inversion and block interchange
    • Yancopoulos, S., Attie, O., and Friedberg, R. 2005. Efficient sorting of genomic permutations by translocation, inversion and block interchange. Bioinformatics 21, 3340-3346.
    • (2005) Bioinformatics , vol.21 , pp. 3340-3346
    • Yancopoulos, S.1    Attie, O.2    Friedberg, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.