-
1
-
-
23644441594
-
Identification of potent and selective MMP-13 inhibitors
-
Wu J, Rush TS, 3rd, Hotchandani R, Du X, Geck M, et al. (2005) Identification of potent and selective MMP-13 inhibitors. Bioorg Med Chem Lett 15: 4105-4109.
-
(2005)
Bioorg Med Chem Lett
, vol.15
, pp. 4105-4109
-
-
Wu, J.1
Rush III, T.S.2
Hotchandani, R.3
Du, X.4
Geck, M.5
-
2
-
-
0029644935
-
Structure of fulllength porcine synovial collagenase reveals a C-terminal domain containing a calcium-linked, four-bladed beta-propeller
-
Li J, Brick P, O'Hare MC, Skarzynski T, Lloyd LF, et al. (1995) Structure of fulllength porcine synovial collagenase reveals a C-terminal domain containing a calcium-linked, four-bladed beta-propeller. Structure 3: 541-549.
-
(1995)
Structure
, vol.3
, pp. 541-549
-
-
Li, J.1
Brick, P.2
O'Hare, M.C.3
Skarzynski, T.4
Lloyd, L.F.5
-
3
-
-
0036240838
-
Transcriptional regulation of collagenase (MMP-1, MMP-13) genes in arthritis: Integration of complex signaling pathways for the recruitment of gene-specific transcription factors
-
Vincenti MP, Brinckerhoff CE (2002) Transcriptional regulation of collagenase (MMP-1, MMP-13) genes in arthritis: integration of complex signaling pathways for the recruitment of gene-specific transcription factors. Arthritis Res 4: 157-164.
-
(2002)
Arthritis Res
, vol.4
, pp. 157-164
-
-
Vincenti, M.P.1
Brinckerhoff, C.E.2
-
4
-
-
34948864524
-
Discovery and characterization of a novel inhibitor of matrix metalloprotease-13 that reduces cartilage damage in vivo without joint fibroplasia side effects
-
Johnson AR, Pavlovsky AG, Ortwine DF, Prior F, Man CF, et al. (2007) Discovery and characterization of a novel inhibitor of matrix metalloprotease-13 that reduces cartilage damage in vivo without joint fibroplasia side effects. J Biol Chem 282: 27781-27791.
-
(2007)
J Biol Chem
, vol.282
, pp. 27781-27791
-
-
Johnson, A.R.1
Pavlovsky, A.G.2
Ortwine, D.F.3
Prior, F.4
Man, C.F.5
-
5
-
-
20144387816
-
Structure-based design of potent and selective inhibitors of collagenase-3 (MMP- 13)
-
Kim SH, Pudzianowski AT, Leavitt KJ, Barbosa J, McDonnell PA, et al. (2005) Structure-based design of potent and selective inhibitors of collagenase-3 (MMP- 13). Bioorg Med Chem Lett 15: 1101-1106.
-
(2005)
Bioorg Med Chem Lett
, vol.15
, pp. 1101-1106
-
-
Kim, S.H.1
Pudzianowski, A.T.2
Leavitt, K.J.3
Barbosa, J.4
McDonnell, P.A.5
-
6
-
-
0030891983
-
Enhanced cleavage of type II collagen by collagenases in osteoarthritic articular cartilage
-
Billinghurst RC, Dahlberg L, Ionescu M, Reiner A, Bourne R, et al. (1997) Enhanced cleavage of type II collagen by collagenases in osteoarthritic articular cartilage. J Clin Invest 99: 1534-1545.
-
(1997)
J Clin Invest
, vol.99
, pp. 1534-1545
-
-
Billinghurst, R.C.1
Dahlberg, L.2
Ionescu, M.3
Reiner, A.4
Bourne, R.5
-
7
-
-
0035165385
-
Postnatal expression in hyaline cartilage of constitutively active human collagenase-3 (MMP-13) induces osteoarthritis in mice
-
Neuhold LA, Killar L, Zhao W, Sung ML, Warner L, et al. (2001) Postnatal expression in hyaline cartilage of constitutively active human collagenase-3 (MMP-13) induces osteoarthritis in mice. J Clin Invest 107: 35-44.
-
(2001)
J Clin Invest
, vol.107
, pp. 35-44
-
-
Neuhold, L.A.1
Killar, L.2
Zhao, W.3
Sung, M.L.4
Warner, L.5
-
8
-
-
1842377505
-
Mechanism of inhibition of the human matrix metalloproteinase stromelysin-1 by TIMP-1
-
Gomis-Ruth FX, Maskos K, Betz M, Bergner A, Huber R, et al. (1997) Mechanism of inhibition of the human matrix metalloproteinase stromelysin-1 by TIMP-1. Nature 389: 77-81.
-
(1997)
Nature
, vol.389
, pp. 77-81
-
-
Gomis-Ruth, F.X.1
Maskos, K.2
Betz, M.3
Bergner, A.4
Huber, R.5
-
9
-
-
67650045889
-
A new class of potent matrix metalloproteinase 13 inhibitors for potential treatment of osteoarthritis: Evidence of histologic and clinical efficacy without musculoskeletal toxicity in rat models
-
Baragi VM, Becher G, Bendele AM, Biesinger R, Bluhm H, et al. (2009) A new class of potent matrix metalloproteinase 13 inhibitors for potential treatment of osteoarthritis: Evidence of histologic and clinical efficacy without musculoskeletal toxicity in rat models. Arthritis Rheum 60: 2008-2018.
-
(2009)
Arthritis Rheum
, vol.60
, pp. 2008-2018
-
-
Baragi, V.M.1
Becher, G.2
Bendele, A.M.3
Biesinger, R.4
Bluhm, H.5
-
10
-
-
72249087935
-
Discovery of (pyridin-4-yl)-2H-tetrazole as a novel scaffold to identify highly selective matrix metalloproteinase-13 inhibitors for the treatment of osteoarthritis
-
Schnute ME, O'Brien PM, Nahra J, Morris M, Howard Roark W, et al. (2009) Discovery of (pyridin-4-yl)-2H-tetrazole as a novel scaffold to identify highly selective matrix metalloproteinase-13 inhibitors for the treatment of osteoarthritis. Bioorg Med Chem Lett.
-
(2009)
Bioorg Med Chem Lett
-
-
Schnute, M.E.1
O'Brien, P.M.2
Nahra, J.3
Morris, M.4
Howard Roark, W.5
-
11
-
-
79961129865
-
Novel selective MMP-13 inhibitors reduce collagen degradation in bovine articular and human osteoarthritis cartilage explants
-
Piecha D, Weik J, Kheil H, Becher G, Timmermann A, et al. (2009) Novel selective MMP-13 inhibitors reduce collagen degradation in bovine articular and human osteoarthritis cartilage explants. Inflamm Res.
-
(2009)
Inflamm Res
-
-
Piecha, D.1
Weik, J.2
Kheil, H.3
Becher, G.4
Timmermann, A.5
-
12
-
-
58249092975
-
The hemopexin domain of MMP-9 inhibits angiogenesis and retards the growth of intracranial glioblastoma xenograft in nude mice
-
Ezhilarasan R, Jadhav U, Mohanam I, Rao JS, Gujrati M, et al. (2009) The hemopexin domain of MMP-9 inhibits angiogenesis and retards the growth of intracranial glioblastoma xenograft in nude mice. Int J Cancer 124: 306-315.
-
(2009)
Int J Cancer
, vol.124
, pp. 306-315
-
-
Ezhilarasan, R.1
Jadhav, U.2
Mohanam, I.3
Rao, J.S.4
Gujrati, M.5
-
13
-
-
69949126360
-
Identification of specific hemopexin-like domain residues that facilitate matrix metalloproteinase collagenolytic activity
-
Lauer-Fields JL, Chalmers MJ, Busby SA, Minond D, Griffin PR, et al. (2009) Identification of specific hemopexin-like domain residues that facilitate matrix metalloproteinase collagenolytic activity. J Biol Chem 284: 24017-24024.
-
(2009)
J Biol Chem
, vol.284
, pp. 24017-24024
-
-
Lauer-Fields, J.L.1
Chalmers, M.J.2
Busby, S.A.3
Minond, D.4
Griffin, P.R.5
-
14
-
-
58149266689
-
The hemopexin domain of matrix metalloproteinase-9 activates cell signaling and promotes migration of schwann cells by binding to low-density lipoprotein receptor-related protein
-
Mantuano E, Inoue G, Li X, Takahashi K, Gaultier A, et al. (2008) The hemopexin domain of matrix metalloproteinase-9 activates cell signaling and promotes migration of schwann cells by binding to low-density lipoprotein receptor-related protein. J Neurosci 28: 11571-11582.
-
(2008)
J Neurosci
, vol.28
, pp. 11571-11582
-
-
Mantuano, E.1
Inoue, G.2
Li, X.3
Takahashi, K.4
Gaultier, A.5
-
15
-
-
0040051981
-
The helping hand of collagenase-3 (MMP-13): 2.7 A crystal structure of its Cterminal haemopexin-like domain
-
Gomis-Ruth FX, Gohlke U, Betz M, Knauper V, Murphy G, et al. (1996) The helping hand of collagenase-3 (MMP-13): 2.7 A crystal structure of its Cterminal haemopexin-like domain. J Mol Biol 264: 556-566.
-
(1996)
J Mol Biol
, vol.264
, pp. 556-566
-
-
Gomis-Ruth, F.X.1
Gohlke, U.2
Betz, M.3
Knauper, V.4
Murphy, G.5
-
16
-
-
31344458952
-
Structure and function of matrix metalloproteinases and TIMPs
-
Nagase H, Visse R, Murphy G (2006) Structure and function of matrix metalloproteinases and TIMPs. Cardiovasc Res 69: 562-573.
-
(2006)
Cardiovasc Res
, vol.69
, pp. 562-573
-
-
Nagase, H.1
Visse, R.2
Murphy, G.3
-
17
-
-
43149095780
-
Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by largescale mutual information analysis
-
Miotto O, Heiny A, Tan TW, August JT, Brusic V (2008) Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by largescale mutual information analysis. BMC Bioinformatics 9 Suppl 1: S18.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 1
-
-
Miotto, O.1
Heiny, A.2
Tan, T.W.3
August, J.T.4
Brusic, V.5
-
18
-
-
3242876311
-
BLAST: At the core of a powerful and diverse set of sequence analysis tools
-
McGinnis S, Madden TL (2004) BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res 32: W20-25.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
McGinnis, S.1
Madden, T.L.2
-
19
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. (2000) The Protein Data Bank. Nucleic Acids Res 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
-
20
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
21
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
-
(1999)
Nucleic Acids Symposium Series
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
22
-
-
12144289984
-
Glide: A new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy
-
Friesner RA, Banks JL, Murphy RB, Halgren TA, Klicic JJ, et al. (2004) Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy. J Med Chem 47: 1739-1749.
-
(2004)
J Med Chem
, vol.47
, pp. 1739-1749
-
-
Friesner, R.A.1
Banks, J.L.2
Murphy, R.B.3
Halgren, T.A.4
Klicic, J.J.5
-
23
-
-
67849104638
-
PubChem: A public information system for analyzing bioactivities of small molecules
-
Wang Y, Xiao J, Suzek TO, Zhang J, Wang J, et al. (2009) PubChem: a public information system for analyzing bioactivities of small molecules. Nucleic Acids Res 37: W623-633.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Wang, Y.1
Xiao, J.2
Suzek, T.O.3
Zhang, J.4
Wang, J.5
-
24
-
-
0029912748
-
Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids
-
Jorgensen WL, Maxwell DS, Tirado-Rives J (1996) Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids. J Am Chem Soc 118: 11225-11236.
-
(1996)
J Am Chem Soc
, vol.118
, pp. 11225-11236
-
-
Jorgensen, W.L.1
Maxwell, D.S.2
Tirado-Rives, J.3
-
25
-
-
15744362065
-
X-ray structure of human proMMP-1: New insights into procollagenase activation and collagen binding
-
Jozic D, Bourenkov G, Lim NH, Visse R, Nagase H, et al. (2005) X-ray structure of human proMMP-1: new insights into procollagenase activation and collagen binding. J Biol Chem 280: 9578-9585.
-
(2005)
J Biol Chem
, vol.280
, pp. 9578-9585
-
-
Jozic, D.1
Bourenkov, G.2
Lim, N.H.3
Visse, R.4
Nagase, H.5
-
26
-
-
0033519654
-
Quantitative structure-activity relationship of human neutrophil collagenase (MMP-8) inhibitors using comparative molecular field analysis and X-ray structure analysis
-
Matter H, Schwab W, Barbier D, Billen G, Haase B, et al. (1999) Quantitative structure-activity relationship of human neutrophil collagenase (MMP-8) inhibitors using comparative molecular field analysis and X-ray structure analysis. J Med Chem 42: 1908-1920.
-
(1999)
J Med Chem
, vol.42
, pp. 1908-1920
-
-
Matter, H.1
Schwab, W.2
Barbier, D.3
Billen, G.4
Haase, B.5
-
27
-
-
4143066015
-
Collagenase unwinds triple-helical collagen prior to peptide bond hydrolysis
-
Chung L, Dinakarpandian D, Yoshida N, Lauer-Fields JL, Fields GB, et al. (2004) Collagenase unwinds triple-helical collagen prior to peptide bond hydrolysis. EMBO J 23: 3020-3030.
-
(2004)
EMBO J
, vol.23
, pp. 3020-3030
-
-
Chung, L.1
Dinakarpandian, D.2
Yoshida, N.3
Lauer-Fields, J.L.4
Fields, G.B.5
-
28
-
-
0035289779
-
Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
-
Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (2001) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev 46: 3-26.
-
(2001)
Adv Drug Deliv Rev
, vol.46
, pp. 3-26
-
-
Lipinski, C.A.1
Lombardo, F.2
Dominy, B.W.3
Feeney, P.J.4
-
29
-
-
77957930879
-
-
QikProp, version 3.0; Schrodinger, LLC: New York
-
Jorgensen WL (2006) QikProp, version 3.0; Schrodinger, LLC: New York.
-
(2006)
-
-
Jorgensen, W.L.1
|