Flow cytometric sorting of the filamentous fungus Trichoderma reesei for improved strains

Enzyme and Microbial Technology

Volumn 47, Issue 7, 2010, Pages 335-341

  Throndset, W ^a,b   Kim, Steve ^a   Bower, Ben ^a   Lantz, Suzanne ^a   Kelemen, Bradley ^a   Pepsin, Michael ^a   Chow, Nicole ^a   Mitchinson, Colin ^a   Ward, Mick ^a  

^a GENENCOR INTERNATIONAL INC   (United States)

^b UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

Biofuels; Biomass; Flow cytometry; Fungi; GFP; Trichoderma reesei

Indexed keywords

CELL SORTING; CELLOBIOHYDROLASE I; CELLULASE PRODUCTION; FILAMENTOUS FUNGI; FLOW CYTOMETRIC MEASUREMENT; FUNGAL DEVELOPMENT; GENE CONSTRUCTS; GENETIC CHANGES; GERMLINGS; GFP; GFP EXPRESSION; GREEN FLUORESCENT PROTEIN; HIGH-SPEED; MICROTITRE PLATE; PROTEIN EXPRESSIONS; T. REESEI; TRICHODERMA; TRICHODERMA REESEI; UV LIGHT;

BIOFUELS; BIOMASS; FLOW CYTOMETRY; FLUORESCENCE; FUNGI; PROTEINS;

GENE EXPRESSION;

GREEN FLUORESCENT PROTEIN;

ARTICLE; CELL SELECTION; ENZYME SYNTHESIS; FLOW CYTOMETRY; FLUORESCENCE; FUNGAL STRAIN; GENE CONSTRUCT; HYPOCREA JECORINA; NONHUMAN; PROTEIN EXPRESSION; SPORE GERMINATION;

FUNGI; HYPOCREA JECORINA; RENILLA RENIFORMIS; TRICHODERMA;

EID: 77957881428     PISSN: 01410229     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.enzmictec.2010.09.003     Document Type: Article

References (44)

1. Baker J.O., Ehrman C.I., Adney W.S., Thomas S.R., Himmel M.E. Hydrolysis of cellulose using ternary mixtures of purified cellulases. Appl Biochem Biotechnol 1998, 70-72:395-403.
2. Barbesgaard P., Heldt-Hansen H.P., Diderichsen B. On the safety of Aspergillus oryzae: a review. Appl Microbiol Biotechnol 1992, 36(5):569-572.
3. Bodie E.A., Armstrong G.L., Dunn-Coleman N.S. Strain improvement of chymosin-producing strains of Aspergillus niger var. awamori using parasexual recombination. Enzyme Microb Technol 1994, 16(5):376-382.
4. Boeke J.D., LaCroute F., Fink G.R. A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol Gen Genet 1984, 197(2):345-346.
5. Boer H., Teeri T.T., Koivula A. Characterization of Trichoderma reesei cellobiohydrolase Cel7A secreted from Pichia pastoris using two different promoters. Biotechnol Bioeng 2000, 69(5):486-494.
6. Bradner J.R., Nevalainen K.M. Metabolic activity in filamentous fungi can be analysed by flow cytometry. J Microbiol Methods 2003, 54(2):193-201.
7. Chalfie M., Tu Y., Euskirchen G., Ward W.W., Prasher D.C. Green fluorescent protein as a marker for gene expression. Science 1994, 263(5148):802-805.
8. Darzynkiewicz Z., Traganos F., Sharpless T.K., Melamed M.R. Cell cycle-related changes in nuclear chromatin of stimulated lymphocytes as measured by flow cytometry. Cancer Res 1977, 37(12):4635-4640.
9. Daugherty P.S., Iverson B.L., Georgiou G. Flow cytometric screening of cell-based libraries. J Immunol Methods 2000, 243(1-2):211-227.
10. Davey H.M., Kell D.B. Flow cytometry and cell sorting of heterogeneous microbial populations: the importance of single-cell analyses. Microbiol Rev 1996, 60(4):641-696.
11. Deacon JW Modern mycology 1997, Blackwell Science, Oxford [England] ; Malden, MA, USA, p.vi, 303, [6] of plates. 3rd ed.
12. Dunn-Coleman N.S., Bloebaum P., Berka R.M., Bodie E., Robinson N., Armstrong G., et al. Commercial levels of chymosin production by Aspergillus. Biotechnology (N Y) 1991, 9(10):976-981.
13. Elgar G., Vavouri T. Tuning in to the signals: noncoding sequence conservation in vertebrate genomes. Trends Genet 2008, 24(7):344-352.
14. England GR. Induction of gene expression using a high concentration sugar mixture United States Patent Application Publication. USA: Genencor, International, p. 19; 2004.
15. Foreman P.K., Brown D., Dankmeyer L., Dean R., Diener S., Dunn-Coleman N.S., et al. Transcriptional regulation of biomass-degrading enzymes in the filamentous fungus Trichoderma reesei. J Biol Chem 2003, 278(34):31988-31997.
16. Georgiou G., Stathopoulos C., Daugherty P.S., Nayak A.R., Iverson B.L., Curtiss R. Display of heterologous proteins on the surface of microorganisms: from the screening of combinatorial libraries to live recombinant vaccines. Nat Biotechnol 1997, 15(1):29-34.
17. http://www.jgi.doe.gov/.
18. Hutter K.J., Eipel H.E. Flow cytometric determinations of cellular substances in algae, bacteria, moulds and yeasts. Antonie Van Leeuwenhoek 1978, 44(3-4):269-282.
19. Ilmen M., Onnela M.L., Klemsdal S., Keranen S., Penttila M. Functional analysis of the cellobiohydrolase I promoter of the filamentous fungus Trichoderma reesei. Mol Gen Genet 1996, 253(3):303-314.
20. Ilmen M., Saloheimo A., Onnela M.L., Penttila M.E. Regulation of cellulase gene expression in the filamentous fungus Trichoderma reesei. Appl Environ Microbiol 1997, 63(4):1298-1306.
21. Kalra M.K., Sidhu M.S., Sandhu D.K., Sandhu R.S. Production and regulation of cellulases in Trichoderma reesei. Appl Microbiol Biotechnol 1984, 20:427-429.
22. Khachatourians G.G., Arora DK Applied mycology and biotechnology 2001, Elsevier, Amsterdam, p. x, 435.
23. Kubicek C.P., Mikus M., Schuster A., Schmoll M., Seiboth B. Metabolic engineering strategies for the improvement of cellulase production by Hypocrea jecorina. Biotechnol Biofuels 2009, 2:19.
24. Kubicek C.P., Royal Society of Chemistry (Great Britain) Trichoderma reesei cellulases: biochemistry, genetics. Physiology and application 1990, Royal Society of Chemistry, Cambridge, p. 200-210.
25. Mach R.L., Zeilinger S. Regulation of gene expression in industrial fungi: Trichoderma. Appl Microbiol Biotechnol 2003, 60(5):515-522.
26. Mandels M., Reese E.T. Induction of cellulase in fungi by cellobiose. J Bacteriol 1960, 79:816-826.
27. Martinez D., Berka R.M., Henrissat B., Saloheimo M., Arvas M., Baker S.E., et al. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn Hypocrea jecorina). Nat Biotechnol 2008, 26(5):553-560.
28. Messner R., Kubicek C.P. Carbon source control of cellobiohydrolase I and II formation by Trichoderma reesei. Appl Environ Microbiol 1991, 57:630-635.
29. Okada H., Tada K., Sekiya T., Yokoyama K., Takahashi A., Tohda H., et al. Molecular characterization and heterologous expression of the gene encoding a low-molecular-mass endoglucanase from Trichoderma reesei QM9414. Appl Environ Microbiol 1998, 64(2):555-563.
30. Olsen M.J., Stephens D., Griffiths D., Daugherty P., Georgiou G., Iverson B.L. Function-based isolation of novel enzymes from a large library. Nat Biotechnol 2000, 18(10):1071-1074.
31. Parekh S., Vinci V.A., Strobel R.J. Improvement of microbial strains and fermentation processes. Appl Microbiol Biotechnol 2000, 54(3):287-301.
32. Parks D.R., Bryan V.M., Oi V.T., Herzenberg L.A. Antigen-specific identification and cloning of hybridomas with a fluorescence-activated cell sorter. Proc Natl Acad Sci U S A 1979, 76(4):1962-1966.
33. Saloheimo M., Nakari-Setala T., Tenkanen M., Penttila M. cDNA cloning of a Trichoderma reesei cellulase and demonstration of endoglucanase activity by expression in yeast. Eur J Biochem 1997, 249(2):584-591.
34. Schell D.J., Farmer J., Newman M., McMillan J.D. Dilute-sulfuric acid pretreatment of corn stover in pilot-scale reactor: investigation of yields, kinetics, and enzymatic digestibilities of solids. Appl Biochem Biotechnol 2003, 105-108:69-85.
35. Serna L., Stadler D. Nuclear division cycle in germinating conidia of Neurospora crassa. J Bacteriol 1978, 136(1):341-351.
36. Shapiro HM Practical flow cytometry 1995, Wiley, New York, p. 542. 3rd ed.
37. Stangl H., Gruber F., Kubicek C.P. Characterization of the Trichoderma reesei cbh2 promoter. Curr Genet 1993, 23(2):115-122.
38. Teeri T.T., Lehtovaara P., Kauppinen S., Salovuori I., Knowles J. Homologous domains in Trichoderma reesei cellulolytic enzymes: gene sequence and expression of cellobiohydrolase II. Gene 1987, 51(1):43-52.
39. Throndset W, Caguiat R, Ward M. Characterisation of Strains of the Filamentous Fungus Trichoderma reesei Using Cytometry and Comparative Genome Hybridisation; in preparation.
40. Toffaletti D.L., Rude T.H., Johnston S.A., Durack D.T., Perfect J.R. Gene transfer in Cryptococcus neoformans by use of biolistic delivery of DNA. J Bacteriol 1993, 175(5):1405-1411.
41. Vogel H. A convenient growth medium for Neurospora (medium N). Microbiol Gen Bull 1956, 13:42-44.
42. Ward M., Wu S., Dauberman J., Weiss B., Larenas E., Bower B., Rey M., Clarkson K., Bott R Biochemistry and Genentics of Cellulose Degradation 1993, Academic Press, New York, p. 53-70. J.P. Aubert, P. Beguin, J. Millet (Eds.).
43. Willingham M.C. Conditional epitopes. is your antibody always specific?. J Histochem Cytochem 1999, 47(10):1233-1236.
44. Wittrup K.D Phage on display. Trends Biotechnol 1999, 17(11):423-424.