Mechanisms of oxygen inhibition of nirK expression in Rhodobacter sphaeroides

Microbiology

Volumn 156, Issue 10, 2010, Pages 3158-3165

  Hartsock, Angela ^a   Shapleigh, James P ^a  

^a Department of Obstetrics Gynecology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CBB3 OXIDOREDUCTASE; NITRITE REDUCTASE; OXIDOREDUCTASE; OXYGEN; UNCLASSIFIED DRUG;

AEROBIC METABOLISM; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM ISOLATION; COCULTURE; DENITRIFICATION; ENZYME ACTIVITY; GENE EXPRESSION; MUTANT; NIRK GENE; NONHUMAN; OXYGEN CONCENTRATION; PHOTOSYNTHESIS; PRIORITY JOURNAL; RHODOBACTER SPHAEROIDES;

AEROBIOSIS; BACTERIAL PROTEINS; DENITRIFICATION; ELECTRON TRANSPORT COMPLEX IV; GENE EXPRESSION REGULATION, BACTERIAL; MUTAGENESIS, INSERTIONAL; MUTATION; NITRITE REDUCTASES; OXYGEN; RHODOBACTER SPHAEROIDES;

RHODOBACTER SPHAEROIDES;

EID: 77957869455     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.038703-0     Document Type: Article

References (36)

1. Baek, S. H., Hartsock, A. & Shapleigh, J. P. (2008). Agrobacterium tumefaciens C58 uses ActR and FnrN to control nirK and nor expression. J Bacteriol 190, 78-86.
2. Bartnikas, T. B., Tosques, I. E., Laratta, W. P., Shi, J. & Shapleigh, J. P. (1997). Characterization of the nitric oxide reductase-encoding region in Rhodobacter sphaeroides 2.4.3. J Bacteriol 179, 3534-3540. (Pubitemid 27232990)
3. Bedmar, E. J., Robles, E. F. & Delgado, M. J. (2005). The complete denitrification pathway of the symbiotic, nitrogen-fixing bacterium Bradyrhizobium japonicum. Biochem Soc Trans 33, 141-144.
4. Chung, C. T., Niemela, S. L. & Miller, R. H. (1989). One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc Natl Acad Sci U S A 86, 2172-2175.
5. 3-type cytochrome c oxidases during respiratory growth of Rhodobacter sphaeroides. J Bacteriol 183, 2013-2024.
6. de Bruijn, F. J., Rossbach, S., Bruand, C. & Parrish, J. R. (2006). A highly conserved Sinorhizobium meliloti operon is induced microaerobically via the FixLJ system and by nitric oxide (NO) via NnrR. Environ Microbiol 8, 1371-1381.
7. Eraso, J. M., Roh, J. H., Zeng, X., Callister, S. J., Lipton, M. S. & Kaplan, S. (2008). Role of the global transcriptional regulator PrrA in Rhodobacter sphaeroides 2.4.1: combined transcriptome and proteome analysis. J Bacteriol 190, 4831-4848.
8. 3 from Pseudomonas stutzeri displays nitric oxide reductase activity. Eur J Biochem 268, 6486-6491.
9. Giardina, G., Rinaldo, S., Johnson, K. A., Di Matteo, A., Brunori, M. & Cutruzzola, F. (2008). NO sensing in Pseudomonas aeruginosa: structure of the transcriptional regulator DNR. J Mol Biol 378, 1002-1015.
10. Hartsock, A. & Shapleigh, J. P. (2010). Identification, functional studies, and genomic comparisons of new members of the NnrR regulon in Rhodobacter sphaeroides. J Bacteriol 192, 903-911.
11. Hughes, M. N. (2008). Chemistry of nitric oxide and related species. Methods Enzymol 436, 3-19.
12. Kovach, M. E., Elzer, P. H., Hill, D. S., Robertson, G. T., Farris, M. A., Roop, R. M., II & Peterson, K. M. (1995). Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene 166, 175-176.
13. Kwiatkowski, A. V. & Shapleigh, J. P. (1996). Requirement of nitric oxide for induction of genes whose products are involved in nitric oxide metabolism in Rhodobacter sphaeroides 2.4.3. J Biol Chem 271, 24382-24388.
14. Kwiatkowski, A. V., Laratta, W. P., Toffanin, A. & Shapleigh, J. P. (1997). Analysis of the role of the nnrR gene product in the response of Rhodobacter sphaeroides 2.4.1 to exogenous nitric oxide. J Bacteriol 179, 5618-5620.
15. Laratta, W. P., Choi, P. S., Tosques, I. E. & Shapleigh, J. P. (2002). Involvement of the PrrB/PrrA two-component system in nitrite respiration in Rhodobacter sphaeroides 2.4.3: evidence for transcriptional regulation. J Bacteriol 184, 3521-3529.
16. Y. Microbiology 152, 1479-1488.
17. Lee, Y. Y., Shearer, N. & Spiro, S. (2006). Transcription factor NNR from Paracoccus denitrificans is a sensor of both nitric oxide and oxygen: isolation of nnr* alleles encoding effector-independent proteins and evidence for a haem-based sensing mechanism. Microbiology 152, 1461-1470.
18. Lueking, D. R., Fraley, R. T. & Kaplan, S. (1978). Intracytoplasmic membrane synthesis in synchronous cell populations of Rhodopseudomonas sphaeroides. J Biol Chem 253, 451-457.
19. Maniatis, T., Fritsch, E. F. & Sambrook, J. (1982). Molecular Cloning: a Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
20. 2 concentrations. FEMS Microbiol Ecol 65, 102-112.
21. O'Gara, J. P., Eraso, J. M. & Kaplan, S. (1998). A redox-responsive pathway for aerobic regulation of photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1. J Bacteriol 180, 4044-4050.
22. 3 cytochrome c oxidase on its function. J Microbiol 44, 284-292.
23. 3-PrrBA signal transduction pathway in vitro. Biochemistry 43, 7915-7923.
24. Pappas, C. T., Sram, J., Moskvin, O. V., Ivanov, P. S., Mackenzie, R. C., Choudhary, M., Land, M. L., Larimer, F. W., Kaplan, S. & Gomelsky, M. (2004). Construction and validation of the Rhodobacter sphaeroides 2.4.1 DNA microarray: transcriptome flexibility at diverse growth modes. J Bacteriol 186, 4748-4758.
25. Patel, R. P., McAndrew, J., Sellak, H., White, C. R., Jo, H., Freeman, B. A. & Darley-Usmar, V. (1999). Biological aspects of reactive nitrogen species. Biochim Biophys Acta 1411, 385-400.
26. 3-type cytochrome oxidase terminates the symbiosis-specific respiratory chain of Bradyrhizobium japonicum. J Bacteriol 178, 1532-1538.
27. Prentki, P. & Krisch, H. M. (1984). In vitro insertional mutagenesis with a selectable DNA fragment. Gene 29, 303-313.
28. Ranson-Olson, B. & Zeilstra-Ryalls, J. (2008). Regulation of the Rhodobacter sphaeroides 2.4.1 hemA gene by PrrA and FnrL. J Bacteriol 190, 6769-6778.
29. 2 and its reduction are both retarded by replacement of valine 279 by isoleucine in cytochrome c oxidase from Paracoccus denitrificans. Biochemistry 39, 6365-6372.
30. Risgaard-Petersen, N., Langezaal, A. M., Ingvardsen, S., Schmid, M. C., Jetten, M. S., Op, C., Derksen, J. W., Pina-Ochoa, E., Eriksson, S. P. & other authors (2006). Evidence for complete denitrification in a benthic foraminifer. Nature 443, 93-96.
31. Simon, R., Priefer, U. & Pühler, A. (1983). A broad host range mobilization system for in vitro genetic engineering: transposon mutagenesis in gram negative bacteria. Nature Biotechnology 1, 784-791.
32. Spiro, S. (2007). Regulators of bacterial responses to nitric oxide. FEMS Microbiol Rev 31, 193-211.
33. Tosques, I. E., Shi, J. & Shapleigh, J. P. (1996). Cloning and characterization of nnrR, whose product is required for the expression of proteins involved in nitric oxide metabolism in Rhodobacter sphaeroides 2.4.3. J Bacteriol 178, 4958-4964.
34. Tosques, I. E., Kwiatkowski, A. V., Shi, J. & Shapleigh, J. P. (1997). Characterization and regulation of the gene encoding nitrite reductase in Rhodobacter sphaeroides 2.4.3. J Bacteriol 179, 1090-1095.
35. Yanisch-Perron, C., Vieira, J. & Messing, J. (1985). Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33, 103-119.
36. Zumft, W. G. (1997). Cell biology and molecular basis of denitrification. Microbiol Mol Biol Rev 61, 533-616.