메뉴 건너뛰기




Volumn 192, Issue 4, 2010, Pages 903-911

Identification, functional studies, and genomic comparisons of new members of the NnrR regulon in Rhodobacter sphaeroides

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; BETA GALACTOSIDASE; CYTOCHROME C2; GENOMIC DNA; GENTAMICIN; KANAMYCIN; NITRIC OXIDE; NITRIC OXIDE SYNTHASE; NITRITE; NITRITE REDUCTASE; RIBOSOME RNA; STREPTOMYCIN; TETRACYCLINE;

EID: 75749137328     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.01026-09     Document Type: Article
Times cited : (16)

References (51)
  • 2
    • 37549051790 scopus 로고    scopus 로고
    • Agrobacterium tumefaciens C58 uses ActR and FnrN to control nirK and nor expression
    • Baek, S., A. Hartsock, and J. Shapleigh. 2008. Agrobacterium tumefaciens C58 uses ActR and FnrN to control nirK and nor expression. J. Bacteriol. 190:78-86.
    • (2008) J. Bacteriol , vol.190 , pp. 78-86
    • Baek, S.1    Hartsock, A.2    Shapleigh, J.3
  • 3
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey, T. L., and C. Elkan. 1994. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2:28-36.
    • (1994) Proc. Int. Conf. Intell. Syst. Mol. Biol , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 4
    • 0036128008 scopus 로고    scopus 로고
    • Characterization of a member of the NnrR regulon in Rhodobacter sphaeroides 2.4.3 encoding a haem-copper protein
    • Bartnikas, T., Y. Wang, T. Bobo, A. Veselov, C. Scholes, and J. Shapleigh. 2002. Characterization of a member of the NnrR regulon in Rhodobacter sphaeroides 2.4.3 encoding a haem-copper protein. Microbiology 148:825-833.
    • (2002) Microbiology , vol.148 , pp. 825-833
    • Bartnikas, T.1    Wang, Y.2    Bobo, T.3    Veselov, A.4    Scholes, C.5    Shapleigh, J.6
  • 5
    • 0032698634 scopus 로고    scopus 로고
    • Transcription activation by catabolite activator protein (CAP)
    • Busby, S., and R. H. Ebright. 1999. Transcription activation by catabolite activator protein (CAP). J. Mol. Biol. 293:199-213.
    • (1999) J. Mol. Biol , vol.293 , pp. 199-213
    • Busby, S.1    Ebright, R.H.2
  • 8
    • 33947373977 scopus 로고    scopus 로고
    • Genome analyses of three strains of Rhodobacter sphaeroides: Evidence of rapid evolution of chromosome II
    • Choudhary, M., X. Zanhua, Y. Fu, and S. Kaplan. 2007. Genome analyses of three strains of Rhodobacter sphaeroides: evidence of rapid evolution of chromosome II. J. Bacteriol. 189:1914-1921.
    • (2007) J. Bacteriol , vol.189 , pp. 1914-1921
    • Choudhary, M.1    Zanhua, X.2    Fu, Y.3    Kaplan, S.4
  • 9
    • 0024558335 scopus 로고
    • One-step preparation of competent Escherichia coli: Transformation and storage of bacterial cells in the same solution
    • Chung, C. T., S. L. Niemela, and R. H. Miller. 1989. One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc. Natl. Acad. Sci. U. S. A. 86:2172-2175.
    • (1989) Proc. Natl. Acad. Sci. U. S. A , vol.86 , pp. 2172-2175
    • Chung, C.T.1    Niemela, S.L.2    Miller, R.H.3
  • 11
    • 0030438017 scopus 로고    scopus 로고
    • Mutational analysis of the nor gene cluster which encodes nitric-oxide reductase from Paracoccus denitrificans
    • de Boer, A., J. van der Oost, W. Reijnders, H. Westerhoff, A. Stouthamer, and R. van Spanning. 1996. Mutational analysis of the nor gene cluster which encodes nitric-oxide reductase from Paracoccus denitrificans. Eur. J. Biochem. 242:592-600.
    • (1996) Eur. J. Biochem , vol.242 , pp. 592-600
    • de Boer, A.1    van der Oost, J.2    Reijnders, W.3    Westerhoff, H.4    Stouthamer, A.5    van Spanning, R.6
  • 12
    • 33745798389 scopus 로고    scopus 로고
    • A highly conserved Sinorhizobium meliloti operon is induced microaerobically via the FixLJ system and by nitric oxide (NO) via NnrR
    • de Bruijn, F., S. Rossbach, C. Bruand, and J. R. Parrish. 2006. A highly conserved Sinorhizobium meliloti operon is induced microaerobically via the FixLJ system and by nitric oxide (NO) via NnrR. Environ. Microbiol. 8:1371-1381.
    • (2006) Environ. Microbiol , vol.8 , pp. 1371-1381
    • de Bruijn, F.1    Rossbach, S.2    Bruand, C.3    Parrish, J.R.4
  • 13
    • 47249107417 scopus 로고    scopus 로고
    • Role of the global transcriptional regulator PrrA in Rhodobacter sphaeroides 2.4.1: Combined transcriptome and proteome analysis
    • Eraso, J., J. Roh, X. Zeng, S. Callister, M. Lipton, and S. Kaplan. 2008. Role of the global transcriptional regulator PrrA in Rhodobacter sphaeroides 2.4.1: combined transcriptome and proteome analysis. J. Bacteriol. 190:4831-4848.
    • (2008) J. Bacteriol , vol.190 , pp. 4831-4848
    • Eraso, J.1    Roh, J.2    Zeng, X.3    Callister, S.4    Lipton, M.5    Kaplan, S.6
  • 14
  • 15
    • 0942298565 scopus 로고    scopus 로고
    • Signal transduction by hemecontaining PAS-domain proteins
    • Gilles-Gonzalez, M., and G. Gonzalez. 2004. Signal transduction by hemecontaining PAS-domain proteins. J. Appl. Physiol. 96:774-783.
    • (2004) J. Appl. Physiol , vol.96 , pp. 774-783
    • Gilles-Gonzalez, M.1    Gonzalez, G.2
  • 16
    • 22744437126 scopus 로고    scopus 로고
    • Characterization of purple sulfur bacteria from the South Andros Black Hole cave system: Highlights taxonomic problems for ecological studies among the genera Allochromatium and Thiocapsa
    • Herbert, R., A. Ranchou-Peyruse, R. Duran, R. Guyoneaud, and S. Schwabe. 2005. Characterization of purple sulfur bacteria from the South Andros Black Hole cave system: highlights taxonomic problems for ecological studies among the genera Allochromatium and Thiocapsa. Environ. Microbiol. 7:1260-1268.
    • (2005) Environ. Microbiol , vol.7 , pp. 1260-1268
    • Herbert, R.1    Ranchou-Peyruse, A.2    Duran, R.3    Guyoneaud, R.4    Schwabe, S.5
  • 17
    • 41549143961 scopus 로고    scopus 로고
    • The nitric oxide (NO)-sensing repressor NsrR of Neisseria meningitidis has a compact regulon of genes involved in NO synthesis and detoxification
    • Heurlier, K., M. Thomson, N. Aziz, and J. Moir. 2008. The nitric oxide (NO)-sensing repressor NsrR of Neisseria meningitidis has a compact regulon of genes involved in NO synthesis and detoxification. J. Bacteriol. 190:2488-2495.
    • (2008) J. Bacteriol , vol.190 , pp. 2488-2495
    • Heurlier, K.1    Thomson, M.2    Aziz, N.3    Moir, J.4
  • 18
    • 0034816908 scopus 로고    scopus 로고
    • Characterization of nirV and a gene encoding a novel pseudoazurin in Rhodobacter sphaeroides 2.4.3
    • Jain, R., and J. Shapleigh. 2001. Characterization of nirV and a gene encoding a novel pseudoazurin in Rhodobacter sphaeroides 2.4.3. Microbiology 147:2505-2515.
    • (2001) Microbiology , vol.147 , pp. 2505-2515
    • Jain, R.1    Shapleigh, J.2
  • 20
    • 0023715368 scopus 로고
    • Improved broad-host-range plasmids for DNA cloning in gram-negative bacteria
    • Keen, N. T., S. Tamaki, D. Kobayashi, and D. Trollinger. 1988. Improved broad-host-range plasmids for DNA cloning in gram-negative bacteria. Gene 70:191-197.
    • (1988) Gene , vol.70 , pp. 191-197
    • Keen, N.T.1    Tamaki, S.2    Kobayashi, D.3    Trollinger, D.4
  • 21
    • 0024787144 scopus 로고
    • Construction of a lacZ-kanamycin-resistance cassette, useful for site-directed mutagenesis and as a promoter probe
    • Kokotek, W., and W. Lotz. 1989. Construction of a lacZ-kanamycin-resistance cassette, useful for site-directed mutagenesis and as a promoter probe. Gene 84:467-471.
    • (1989) Gene , vol.84 , pp. 467-471
    • Kokotek, W.1    Lotz, W.2
  • 22
    • 0344153756 scopus 로고    scopus 로고
    • Phylogeny of the bacterial superfamily of Crp-Fnr transcription regulators: Exploiting the metabolic spectrum by controlling alternative gene programs
    • Korner, H., H. Sofia, and W. Zumft. 2003. Phylogeny of the bacterial superfamily of Crp-Fnr transcription regulators: exploiting the metabolic spectrum by controlling alternative gene programs. FEMS Microbiol. Rev. 27: 559-592.
    • (2003) FEMS Microbiol. Rev , vol.27 , pp. 559-592
    • Korner, H.1    Sofia, H.2    Zumft, W.3
  • 23
    • 0028793123 scopus 로고
    • Four new derivatives of the broad-hostrange cloning vector pBBR1MCS, carrying different antibiotic- resistance cassettes
    • Kovach, M. E., P. H. Elzer, D. S. Hill, G. T. Robertson, M. A. Farris, R. M. Roop, and K. M. Peterson. 1995. Four new derivatives of the broad-hostrange cloning vector pBBR1MCS, carrying different antibiotic- resistance cassettes. Gene 166:175-176.
    • (1995) Gene , vol.166 , pp. 175-176
    • Kovach, M.E.1    Elzer, P.H.2    Hill, D.S.3    Robertson, G.T.4    Farris, M.A.5    Roop, R.M.6    Peterson, K.M.7
  • 24
    • 0029785470 scopus 로고    scopus 로고
    • Requirement of nitric oxide for induction of genes whose products are involved in nitric oxide metabolism in Rhodobacter sphaeroides 2.4.3
    • Kwiatkowski, A., and J. Shapleigh. 1996. Requirement of nitric oxide for induction of genes whose products are involved in nitric oxide metabolism in Rhodobacter sphaeroides 2.4.3. J. Biol. Chem. 271:24382-24388.
    • (1996) J. Biol. Chem , vol.271 , pp. 24382-24388
    • Kwiatkowski, A.1    Shapleigh, J.2
  • 25
    • 0030885441 scopus 로고    scopus 로고
    • Analysis of the role of the nnrR gene product in the response of Rhodobacter sphaeroides 2.4.1 to exogenous nitric oxide
    • Kwiatkowski, A., W. Laratta, A. Toffanin, and J. Shapleigh. 1997. Analysis of the role of the nnrR gene product in the response of Rhodobacter sphaeroides 2.4.1 to exogenous nitric oxide. J. Bacteriol. 179:5618-15620.
    • (1997) J. Bacteriol , vol.179 , pp. 5618-15620
    • Kwiatkowski, A.1    Laratta, W.2    Toffanin, A.3    Shapleigh, J.4
  • 27
    • 0036279617 scopus 로고    scopus 로고
    • Involvement of the PrrB/PrrA two-component system in nitrite respiration in Rhodobacter sphaeroides 2.4.3: Evidence for transcriptional regulation
    • Laratta, W., P. Choi, I. Tosques, and J. Shapleigh. 2002. Involvement of the PrrB/PrrA two-component system in nitrite respiration in Rhodobacter sphaeroides 2.4.3: evidence for transcriptional regulation. J. Bacteriol. 184:3521-3529.
    • (2002) J. Bacteriol , vol.184 , pp. 3521-3529
    • Laratta, W.1    Choi, P.2    Tosques, I.3    Shapleigh, J.4
  • 28
    • 0036254854 scopus 로고    scopus 로고
    • Taxis response of various denitrifying bacteria to nitrate and nitrite
    • Lee, D., A. Ramos, L. Macomber, and J. Shapleigh. 2002. Taxis response of various denitrifying bacteria to nitrate and nitrite. Appl. Environ. Microbiol. 68:2140-2147.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 2140-2147
    • Lee, D.1    Ramos, A.2    Macomber, L.3    Shapleigh, J.4
  • 29
    • 33745323369 scopus 로고    scopus 로고
    • Visualization of nitric oxide in living cells by a copper-based fluorescent probe
    • Lim, M. H., D. Xu, and S. J. Lippard. 2006. Visualization of nitric oxide in living cells by a copper-based fluorescent probe. Nat. Chem. Biol. 2:375-380.
    • (2006) Nat. Chem. Biol , vol.2 , pp. 375-380
    • Lim, M.H.1    Xu, D.2    Lippard, S.J.3
  • 31
    • 0017799142 scopus 로고
    • Intracytoplasmic membrane synthesis in synchronous cell populations of Rhodopseudomonas sphaeroides
    • Lueking, D. R., R. T. Fraley, and S. Kaplan. 1978. Intracytoplasmic membrane synthesis in synchronous cell populations of Rhodopseudomonas sphaeroides. J. Biol. Chem. 253:451-457.
    • (1978) J. Biol. Chem , vol.253 , pp. 451-457
    • Lueking, D.R.1    Fraley, R.T.2    Kaplan, S.3
  • 33
    • 0034034325 scopus 로고    scopus 로고
    • Interacting regulatory circuits involved in orderly control of photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1
    • Oh, J. I., J. M. Eraso, and S. Kaplan. 2000. Interacting regulatory circuits involved in orderly control of photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1. J. Bacteriol. 182:3081-3087.
    • (2000) J. Bacteriol , vol.182 , pp. 3081-3087
    • Oh, J.I.1    Eraso, J.M.2    Kaplan, S.3
  • 35
    • 0037184270 scopus 로고    scopus 로고
    • Denitrifying genes in bacterial and archaeal genomes
    • Philippot, L. 2002. Denitrifying genes in bacterial and archaeal genomes. Biochim. Biophys. Acta 1577:355-376.
    • (2002) Biochim. Biophys. Acta , vol.1577 , pp. 355-376
    • Philippot, L.1
  • 36
    • 0021592032 scopus 로고
    • In vitro insertional mutagenesis with a selectable DNA fragment
    • Prentki, P., and H. M. Krisch. 1984. In vitro insertional mutagenesis with a selectable DNA fragment. Gene 29:303-313.
    • (1984) Gene , vol.29 , pp. 303-313
    • Prentki, P.1    Krisch, H.M.2
  • 37
    • 85044710067 scopus 로고    scopus 로고
    • Dissimilatory metabolism of nitrogen oxides in bacteria: Comparative reconstruction of transcriptional networks
    • Rodionov, D., I. Dubchak, A. Arkin, E. Alm, and M. Gelfand. 2005. Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks. PLoS Comput. Biol. 1:e55.
    • (2005) PLoS Comput. Biol , vol.1
    • Rodionov, D.1    Dubchak, I.2    Arkin, A.3    Alm, E.4    Gelfand, M.5
  • 38
    • 14244254898 scopus 로고    scopus 로고
    • Cyclic diguanylate is a ubiquitous signaling molecule in bacteria: Insights into biochemistry of the GGDEF protein domain
    • Ryjenkov, D., M. Tarutina, O. Moskvin, and M. Gomelsky. 2005. Cyclic diguanylate is a ubiquitous signaling molecule in bacteria: insights into biochemistry of the GGDEF protein domain. J. Bacteriol. 187:1792-1798.
    • (2005) J. Bacteriol , vol.187 , pp. 1792-1798
    • Ryjenkov, D.1    Tarutina, M.2    Moskvin, O.3    Gomelsky, M.4
  • 39
    • 21844451590 scopus 로고    scopus 로고
    • The ubiquitous protein domain EAL is a cyclic diguanylate-specific phosphodiesterase: Enzymatically active and inactive EAL domains
    • Schmidt, A., D. Ryjenkov, and M. Gomelsky. 2005. The ubiquitous protein domain EAL is a cyclic diguanylate-specific phosphodiesterase: enzymatically active and inactive EAL domains. J. Bacteriol. 187:4774-4781.
    • (2005) J. Bacteriol , vol.187 , pp. 4774-4781
    • Schmidt, A.1    Ryjenkov, D.2    Gomelsky, M.3
  • 40
    • 75749138739 scopus 로고    scopus 로고
    • Dissimilatory and assimilatory nitrate reduction in the purple photosynthetic bacteria
    • C. N. Hunter, F. Daldal, M. C. Thurnauer, and J. T. Beatty ed, Springer Science, Dordrecht, The Netherlands
    • Shapleigh, J. 2009. Dissimilatory and assimilatory nitrate reduction in the purple photosynthetic bacteria, p. 623-642. In C. N. Hunter, F. Daldal, M. C. Thurnauer, and J. T. Beatty (ed.), The purple phototrophic bacteria, vol. 28. Springer Science, Dordrecht, The Netherlands.
    • (2009) The purple phototrophic bacteria , vol.28 , pp. 623-642
    • Shapleigh, J.1
  • 41
    • 34247566143 scopus 로고    scopus 로고
    • Role of EAL-containing proteins in multicellular behavior of Salmonella enterica serovar Typhimurium
    • Simm, R., A. Lusch, A. Kader, M. Andersson, and U. Romling. 2007. Role of EAL-containing proteins in multicellular behavior of Salmonella enterica serovar Typhimurium. J. Bacteriol. 189:3613-3623.
    • (2007) J. Bacteriol , vol.189 , pp. 3613-3623
    • Simm, R.1    Lusch, A.2    Kader, A.3    Andersson, M.4    Romling, U.5
  • 42
    • 0021027842 scopus 로고
    • A broad host range mobilization system for in vivo genetic engineering: Transposon mutagenesis in gram negative bacteria
    • Simon, R., U. Priefer, and A. Pühler. 1983. A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in gram negative bacteria. Biotechnology (NY) 1:784-791.
    • (1983) Biotechnology (NY) , vol.1 , pp. 784-791
    • Simon, R.1    Priefer, U.2    Pühler, A.3
  • 43
    • 33846892483 scopus 로고    scopus 로고
    • Regulators of bacterial responses to nitric oxide
    • Spiro, S. 2007. Regulators of bacterial responses to nitric oxide. FEMS Microbiol. Rev. 31:193-211.
    • (2007) FEMS Microbiol. Rev , vol.31 , pp. 193-211
    • Spiro, S.1
  • 44
    • 0028556430 scopus 로고
    • The FNR family of transcriptional regulators
    • Spiro, S. 1994. The FNR family of transcriptional regulators. Antonie Van Leeuwenhoek 66:23-36.
    • (1994) Antonie Van Leeuwenhoek , vol.66 , pp. 23-36
    • Spiro, S.1
  • 45
    • 0029762373 scopus 로고    scopus 로고
    • Cloning and characterization of nnrR, whose product is required for the expression of proteins involved in nitric oxide metabolism in Rhodobacter sphaeroides 2.4.3
    • Tosques, I., J. Shi, and J. Shapleigh. 1996. Cloning and characterization of nnrR, whose product is required for the expression of proteins involved in nitric oxide metabolism in Rhodobacter sphaeroides 2.4.3. J. Bacteriol. 178: 4958-4964.
    • (1996) J. Bacteriol , vol.178 , pp. 4958-4964
    • Tosques, I.1    Shi, J.2    Shapleigh, J.3
  • 46
    • 0031047127 scopus 로고    scopus 로고
    • Characterization and regulation of the gene encoding nitrite reductase in Rhodobacter sphaeroides 2.4.3
    • Tosques, I., A. Kwiatkowski, J. Shi, and J. Shapleigh. 1997. Characterization and regulation of the gene encoding nitrite reductase in Rhodobacter sphaeroides 2.4.3. J. Bacteriol. 179:1090-1095.
    • (1997) J. Bacteriol , vol.179 , pp. 1090-1095
    • Tosques, I.1    Kwiatkowski, A.2    Shi, J.3    Shapleigh, J.4
  • 47
    • 4644363481 scopus 로고    scopus 로고
    • Effect of Escherichia coli morphogene bolA on biofilms
    • Vieira, H., P. Freire, and C. Arraiano. 2004. Effect of Escherichia coli morphogene bolA on biofilms. Appl. Environ. Microbiol. 70:5682-5684.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 5682-5684
    • Vieira, H.1    Freire, P.2    Arraiano, C.3
  • 48
    • 0021943518 scopus 로고
    • Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
    • Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
    • (1985) Gene , vol.33 , pp. 103-119
    • Yanisch-Perron, C.1    Vieira, J.2    Messing, J.3
  • 49
    • 0028889264 scopus 로고
    • Aerobic and anaerobic regulation in Rhodobacter sphaeroides 2.4.1: The role of the gene
    • Zeilstra-Ryalls, J., and S. Kaplan. 1995. Aerobic and anaerobic regulation in Rhodobacter sphaeroides 2.4.1: the role of the gene. J. Bacteriol. 177:6422-6431.
    • (1995) J. Bacteriol , vol.177 , pp. 6422-6431
    • Zeilstra-Ryalls, J.1    Kaplan, S.2
  • 50
    • 0031456471 scopus 로고    scopus 로고
    • Cell biology and molecular basis of denitrification
    • Zumft, W. 1997. Cell biology and molecular basis of denitrification. Microbiol. Mol. Biol. Rev. 61:533-616.
    • (1997) Microbiol. Mol. Biol. Rev , vol.61 , pp. 533-616
    • Zumft, W.1
  • 51
    • 0031018503 scopus 로고    scopus 로고
    • Enzyme diversity and mosaic gene organization in denitrification
    • Zumft, W., and H. Korner. 1997. Enzyme diversity and mosaic gene organization in denitrification. Antonie Van Leeuwenhoek 71:43-58.
    • (1997) Antonie Van Leeuwenhoek , vol.71 , pp. 43-58
    • Zumft, W.1    Korner, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.