메뉴 건너뛰기




Volumn 83, Issue 2, 2010, Pages 270-274

QPCR assays to quantify genes and gene expression associated with microbial perchlorate reduction

Author keywords

Perchlorate; Quantitative PCR; Reverse transcription qPCR

Indexed keywords

BACTERIAL DNA; CHLORITE DISMUTASE; DISSOLVED OXYGEN; NITRATE; OXIDOREDUCTASE; PERCHLORATE; PERCHLORATE REDUCTASE A; UNCLASSIFIED DRUG;

EID: 77957864039     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2010.09.002     Document Type: Article
Times cited : (12)

References (34)
  • 1
    • 0036794791 scopus 로고    scopus 로고
    • Sequencing and transcriptional analysis of the chlorite dismutase gene of Dechloromonas agitata and its use as a metabolic probe
    • Bender K.S., O'Connor S.A., Chakraborty R., Coates J.D., Achenbach L.A. Sequencing and transcriptional analysis of the chlorite dismutase gene of Dechloromonas agitata and its use as a metabolic probe. Appl. Environ. Microbiol. 2002, 68:4820-4826.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 4820-4826
    • Bender, K.S.1    O'Connor, S.A.2    Chakraborty, R.3    Coates, J.D.4    Achenbach, L.A.5
  • 2
    • 4644239140 scopus 로고    scopus 로고
    • Metabolic primers for detection of (per) chlorate-reducing bacteria in the environment and phylogenetic analysis of cld gene sequences
    • Bender K.S., Rice M.R., Fugate W.H., Coates J.D., Achenbach L.A. Metabolic primers for detection of (per) chlorate-reducing bacteria in the environment and phylogenetic analysis of cld gene sequences. Appl. Environ. Microbiol. 2004, 70:5651-5658.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 5651-5658
    • Bender, K.S.1    Rice, M.R.2    Fugate, W.H.3    Coates, J.D.4    Achenbach, L.A.5
  • 4
    • 70350119822 scopus 로고    scopus 로고
    • Evaluation of the impact of single nucleotide polymorphisms and primer mismatches on quantitative PCR
    • Boyle B., Dallaire N., MacKay J. Evaluation of the impact of single nucleotide polymorphisms and primer mismatches on quantitative PCR. BMC Biotechnol. 2009, 9:75-89.
    • (2009) BMC Biotechnol. , vol.9 , pp. 75-89
    • Boyle, B.1    Dallaire, N.2    MacKay, J.3
  • 5
    • 0037210056 scopus 로고    scopus 로고
    • The sensitivity of fixed-bed biological perchlorate removal to changes in operating conditions and water quality characteristics
    • Brown J.C., Snoeyink V.L., Raskin L., Lin R. The sensitivity of fixed-bed biological perchlorate removal to changes in operating conditions and water quality characteristics. Water Res. 2003, 37:206-214.
    • (2003) Water Res. , vol.37 , pp. 206-214
    • Brown, J.C.1    Snoeyink, V.L.2    Raskin, L.3    Lin, R.4
  • 6
    • 0033171582 scopus 로고    scopus 로고
    • Reduction of (per)chlorate by a novel organism isolated from paper mill waste
    • Bruce R.A., Achenbach L.A., Coates J.D. Reduction of (per)chlorate by a novel organism isolated from paper mill waste. Environ. Microbiol. 1999, 1:319-329.
    • (1999) Environ. Microbiol. , vol.1 , pp. 319-329
    • Bruce, R.A.1    Achenbach, L.A.2    Coates, J.D.3
  • 8
    • 3142726522 scopus 로고    scopus 로고
    • Microbial perchlorate reduction: rocket-fueled metabolism
    • Coates J.D., Achenbach L.A. Microbial perchlorate reduction: rocket-fueled metabolism. Nat. Rev. 2004, 2:569-580.
    • (2004) Nat. Rev. , vol.2 , pp. 569-580
    • Coates, J.D.1    Achenbach, L.A.2
  • 10
    • 0028105839 scopus 로고
    • Isolation, characterization, and distribution of denitrifying toluene degraders from a variety of habitats
    • Fries M.R., Zhou J., Chee-Sanford J., Tiedje J.M. Isolation, characterization, and distribution of denitrifying toluene degraders from a variety of habitats. Appl. Environ. Microbiol. 1994, 60:2802-2810.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 2802-2810
    • Fries, M.R.1    Zhou, J.2    Chee-Sanford, J.3    Tiedje, J.M.4
  • 12
    • 20044379052 scopus 로고    scopus 로고
    • Perchlorate biodegradation for water treatment
    • Hatzinger P.B. Perchlorate biodegradation for water treatment. Environ. Sci. Technol. 2005, 39:239A-247A.
    • (2005) Environ. Sci. Technol. , vol.39
    • Hatzinger, P.B.1
  • 13
    • 0032912373 scopus 로고    scopus 로고
    • Bacterial reduction of perchlorate and nitrate in water
    • Herman D.C., Frankenberger W.T. Bacterial reduction of perchlorate and nitrate in water. J. Environ. Qual. 1999, 28:1018-1024.
    • (1999) J. Environ. Qual. , vol.28 , pp. 1018-1024
    • Herman, D.C.1    Frankenberger, W.T.2
  • 14
    • 22144451860 scopus 로고    scopus 로고
    • An internal reference technique for accurately quantifying specific mRNAs by real-time PCR with application to the tceA reductive dehalogenase gene
    • Johnson D.R., Lee P.K.H., Holmes V.F., Alvarez-Cohen L. An internal reference technique for accurately quantifying specific mRNAs by real-time PCR with application to the tceA reductive dehalogenase gene. Appl. Environ. Microbiol. 2005, 71:3866-3871.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 3866-3871
    • Johnson, D.R.1    Lee, P.K.H.2    Holmes, V.F.3    Alvarez-Cohen, L.4
  • 15
    • 0032729246 scopus 로고    scopus 로고
    • Purification and characterization of (per)chlorate reductase from the chlorate-respiring strain GR-1
    • Kengen S.W.M., Rikken G.B., Hagen W.R., van Ginkel C.G., Stams A.J.M. Purification and characterization of (per)chlorate reductase from the chlorate-respiring strain GR-1. J. Bacteriol. 1999, 181:6706-6711.
    • (1999) J. Bacteriol. , vol.181 , pp. 6706-6711
    • Kengen, S.W.M.1    Rikken, G.B.2    Hagen, W.R.3    van Ginkel, C.G.4    Stams, A.J.M.5
  • 16
    • 0034279192 scopus 로고    scopus 로고
    • Fixed-bed bioreactor treating perchlorate-contaminated waters
    • Kim K., Logan B.E. Fixed-bed bioreactor treating perchlorate-contaminated waters. Environ. Eng. Sci. 2000, 17:257-265.
    • (2000) Environ. Eng. Sci. , vol.17 , pp. 257-265
    • Kim, K.1    Logan, B.E.2
  • 17
    • 0034923926 scopus 로고    scopus 로고
    • Microbial reduction of perchlorate in pure and mixed culture packed-bed bioreactors
    • Kim K., Logan B.E. Microbial reduction of perchlorate in pure and mixed culture packed-bed bioreactors. Water Res. 2001, 35:3071-3076.
    • (2001) Water Res. , vol.35 , pp. 3071-3076
    • Kim, K.1    Logan, B.E.2
  • 18
    • 33748770056 scopus 로고    scopus 로고
    • Reductive dehalogenase gene expression as a biomarker for physiological activity of Dehalococcoides spp
    • Lee P.K.H., Johnson D.R., Holmes V.F., He J.Z., Alvarez-Cohen L. Reductive dehalogenase gene expression as a biomarker for physiological activity of Dehalococcoides spp. Appl. Environ. Microbiol. 2006, 72:6161-6168.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 6161-6168
    • Lee, P.K.H.1    Johnson, D.R.2    Holmes, V.F.3    He, J.Z.4    Alvarez-Cohen, L.5
  • 19
    • 0002903809 scopus 로고    scopus 로고
    • A review of chlorate- and perchlorate-respiring microorganisms
    • Logan B.E. A review of chlorate- and perchlorate-respiring microorganisms. Biorem. J. 1998, 2:69-79.
    • (1998) Biorem. J. , vol.2 , pp. 69-79
    • Logan, B.E.1
  • 20
    • 0035340308 scopus 로고    scopus 로고
    • Analysis of overall perchlorate removal rates in packed-bed bioreactors
    • Logan B.E. Analysis of overall perchlorate removal rates in packed-bed bioreactors. J. Environ. Eng. 2001, 127:469-471.
    • (2001) J. Environ. Eng. , vol.127 , pp. 469-471
    • Logan, B.E.1
  • 21
    • 2142763872 scopus 로고    scopus 로고
    • Cleaning up with genomics: applying molecular biology to bioremediation
    • Lovley D.R. Cleaning up with genomics: applying molecular biology to bioremediation. Nat. Rev. Microbiol. 2003, 1:35-44.
    • (2003) Nat. Rev. Microbiol. , vol.1 , pp. 35-44
    • Lovley, D.R.1
  • 22
    • 0344420191 scopus 로고    scopus 로고
    • Perchlorate removal in sand and plastic media bioreactors
    • Min B., Evans P.J., Chu A.K., Logan B.E. Perchlorate removal in sand and plastic media bioreactors. Water Res. 2004, 38:47-60.
    • (2004) Water Res. , vol.38 , pp. 47-60
    • Min, B.1    Evans, P.J.2    Chu, A.K.3    Logan, B.E.4
  • 23
    • 22144480310 scopus 로고    scopus 로고
    • Reduction of perchlorate and nitrate by microbial communities in vadose soil
    • Nozawa-Inoue M., Scow K.M., Rolston D.E. Reduction of perchlorate and nitrate by microbial communities in vadose soil. Appl. Environ. Microbiol. 2005, 71:3928-3934.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 3928-3934
    • Nozawa-Inoue, M.1    Scow, K.M.2    Rolston, D.E.3
  • 24
    • 40849111496 scopus 로고    scopus 로고
    • Quantitative detection of perchlorate-reducing bacteria by real-time PCR targeting the perchlorate reductase gene
    • Nozawa-Inoue M., Jien M., Hamilton N.S., Stewart V., Scow K.M., Hristova K.R. Quantitative detection of perchlorate-reducing bacteria by real-time PCR targeting the perchlorate reductase gene. Appl. Environ. Microbiol. 2008, 74:1941-1944.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 1941-1944
    • Nozawa-Inoue, M.1    Jien, M.2    Hamilton, N.S.3    Stewart, V.4    Scow, K.M.5    Hristova, K.R.6
  • 25
    • 0036268826 scopus 로고    scopus 로고
    • Universal immunoprobe for (per)chlorate-reducing bacteria
    • O'Connor S.M., Coates J.D. Universal immunoprobe for (per)chlorate-reducing bacteria. Appl. Environ. Microbiol. 2002, 68:3108-3113.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3108-3113
    • O'Connor, S.M.1    Coates, J.D.2
  • 26
    • 0036728476 scopus 로고    scopus 로고
    • The role of molecular methods in evaluating biological treatment processes
    • Rittmann B.E. The role of molecular methods in evaluating biological treatment processes. Water Environ. Res. 2002, 74:421-427.
    • (2002) Water Environ. Res. , vol.74 , pp. 421-427
    • Rittmann, B.E.1
  • 27
    • 3242784271 scopus 로고    scopus 로고
    • Detection and quantification of gene expression in environmental bacteriology
    • Sharkey F.H., Banat I.M., Marchant R. Detection and quantification of gene expression in environmental bacteriology. Appl. Environ. Microbiol. 2004, 70:3795-3806.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 3795-3806
    • Sharkey, F.H.1    Banat, I.M.2    Marchant, R.3
  • 28
    • 30344456697 scopus 로고    scopus 로고
    • Stimulation and molecular characterization of bacterial perchlorate degradation by plant-produced electron donors
    • Shrout J.D., Struckhoff G.C., Parkin G.F., Schnoor J.L. Stimulation and molecular characterization of bacterial perchlorate degradation by plant-produced electron donors. Environ. Sci. Technol. 2006, 40:310-317.
    • (2006) Environ. Sci. Technol. , vol.40 , pp. 310-317
    • Shrout, J.D.1    Struckhoff, G.C.2    Parkin, G.F.3    Schnoor, J.L.4
  • 29
    • 1542358098 scopus 로고    scopus 로고
    • 2 exposure on perchlorate reduction by Dechlorosoma sp. KJ
    • 2 exposure on perchlorate reduction by Dechlorosoma sp. KJ. Water Res. 2004, 38:1626-1632.
    • (2004) Water Res. , vol.38 , pp. 1626-1632
    • Song, Y.G.1    Logan, B.E.2
  • 30
    • 0014285422 scopus 로고
    • Prosthecomicrobium and Ancalomicrobium: new prosthecate freshwater bacteria
    • Staley J.T. Prosthecomicrobium and Ancalomicrobium: new prosthecate freshwater bacteria. J. Bacteriol. 1968, 95:1921-1942.
    • (1968) J. Bacteriol. , vol.95 , pp. 1921-1942
    • Staley, J.T.1
  • 31
    • 0842303588 scopus 로고    scopus 로고
    • Degradation kinetics of perchlorate in sediments and soils
    • Tan K., Anderson T.A., Jackson W.A. Degradation kinetics of perchlorate in sediments and soils. Water Air Soil Pollut. 2004, 151:245-259.
    • (2004) Water Air Soil Pollut. , vol.151 , pp. 245-259
    • Tan, K.1    Anderson, T.A.2    Jackson, W.A.3
  • 33
    • 0031894033 scopus 로고    scopus 로고
    • Perchlorate and the thyroid gland
    • Wolff J. Perchlorate and the thyroid gland. Pharmacol. Rev. 1998, 50:89-105.
    • (1998) Pharmacol. Rev. , vol.50 , pp. 89-105
    • Wolff, J.1
  • 34
    • 23744437264 scopus 로고    scopus 로고
    • Molecular assessment of inoculated and indigenous bacteria in biofilms from a pilot-scale perchlorate-reducing bioreactor
    • Zhang H., Logan B.E., Regan J.M., Achenbach L.A., Bruns M.A. Molecular assessment of inoculated and indigenous bacteria in biofilms from a pilot-scale perchlorate-reducing bioreactor. Microb. Ecol. 2005, 49:388-398.
    • (2005) Microb. Ecol. , vol.49 , pp. 388-398
    • Zhang, H.1    Logan, B.E.2    Regan, J.M.3    Achenbach, L.A.4    Bruns, M.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.