-
1
-
-
18544365698
-
Gene-expression profiles predict survival of patients with lung adenocarcinoma
-
Beer,D.G. et al. (2002) Gene-expression profiles predict survival of patients with lung adenocarcinoma. Nat. Med., 8, 816-824.
-
(2002)
Nat. Med.
, vol.8
, pp. 816-824
-
-
Beer, D.G.1
-
2
-
-
33644813589
-
Robust diagnosis of non-Hodgkin lymphoma phenotypes validated on gene expression data from different laboratories
-
Bhanot,G. et al. (2005) Robust diagnosis of non-Hodgkin lymphoma phenotypes validated on gene expression data from different laboratories. Genome Inform., 16, 233-244.
-
(2005)
Genome Inform.
, vol.16
, pp. 233-244
-
-
Bhanot, G.1
-
3
-
-
0035923521
-
Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses
-
Bhattacharjee,A. et al. (2001) Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses. Proc. Natl Acad. Sci. USA, 98, 13790-13795.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 13790-13795
-
-
Bhattacharjee, A.1
-
4
-
-
1542574379
-
Multi-platform, multi-site, microarray-based human tumor classification
-
Bloom,G. et al. (2004) Multi-platform, multi-site, microarray-based human tumor classification. Am. J. Pathol., 164, 9-16.
-
(2004)
Am. J. Pathol.
, vol.164
, pp. 9-16
-
-
Bloom, G.1
-
5
-
-
34248183381
-
Cross platform microarray analysis for robust identification of differentially expressed genes
-
Bosotti,R. et al. (2007) Cross platform microarray analysis for robust identification of differentially expressed genes. BMC Bioinformatics, 8 (Suppl. 1), S5.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 1
-
-
Bosotti, R.1
-
6
-
-
0037499970
-
MatchMiner: a tool for batch navigation among gene and gene product identifiers
-
Bussey,K.J. et al. (2003) MatchMiner: a tool for batch navigation among gene and gene product identifiers. Genome Biol., 4, R27.
-
(2003)
Genome Biol.
, vol.4
-
-
Bussey, K.J.1
-
7
-
-
33845345622
-
A rapid method for microarray cross platform comparisons using gene expression signatures
-
Cheadle,C. et al. (2007) A rapid method for microarray cross platform comparisons using gene expression signatures. Mol. Cell Probes, 21, 35-46.
-
(2007)
Mol. Cell Probes
, vol.21
, pp. 35-46
-
-
Cheadle, C.1
-
8
-
-
67649197934
-
Ratio adjustment and calibration scheme for gene-wise normalization to enhance microarray inter-study prediction
-
Cheng,C. et al. (2009) Ratio adjustment and calibration scheme for gene-wise normalization to enhance microarray inter-study prediction. Bioinformatics, 25, 1655-1661.
-
(2009)
Bioinformatics
, vol.25
, pp. 1655-1661
-
-
Cheng, C.1
-
11
-
-
0035939903
-
Delineation of prognostic biomarkers in prostate cancer
-
Dhanasekaran,S.M. et al. (2001) Delineation of prognostic biomarkers in prostate cancer. Nature, 412, 822-826.
-
(2001)
Nature
, vol.412
, pp. 822-826
-
-
Dhanasekaran, S.M.1
-
12
-
-
19544383638
-
Sample size determination in microarray experiments for class comparison and prognostic classification
-
Dobbin,K. and Simon,R. (2005) Sample size determination in microarray experiments for class comparison and prognostic classification. Biostatistics, 6, 27-38.
-
(2005)
Biostatistics
, vol.6
, pp. 27-38
-
-
Dobbin, K.1
Simon, R.2
-
13
-
-
40749107034
-
How large a training set is needed to develop a classifier for microarray data?
-
Dobbin,K.K. et al. (2008) How large a training set is needed to develop a classifier for microarray data? Clin. Cancer Res., 14, 108-114.
-
(2008)
Clin. Cancer Res
, vol.14
, pp. 108-114
-
-
Dobbin, K.K.1
-
14
-
-
13444282534
-
Outcome signature genes in breast cancer: is there a unique set?
-
Ein-Dor,L. et al. (2005) Outcome signature genes in breast cancer: is there a unique set? Bioinformatics, 21, 171-178.
-
(2005)
Bioinformatics
, vol.21
, pp. 171-178
-
-
Ein-Dor, L.1
-
15
-
-
0035923583
-
Diversity of gene expression in adenocarcinoma of the lung
-
Garber,M.E. et al. (2001) Diversity of gene expression in adenocarcinoma of the lung. Proc. Natl Acad. Sci. USA, 98, 13784-13789.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 13784-13789
-
-
Garber, M.E.1
-
16
-
-
0036161259
-
Gene selection for cancer classification using support vector machines
-
Guyon,I. et al. (2002) Gene selection for cancer classification using support vector machines. Mach. Learn., 46, 389-422.
-
(2002)
Mach. Learn.
, vol.46
, pp. 389-422
-
-
Guyon, I.1
-
17
-
-
0001138328
-
A K-means clustering algorithm
-
Hartigan,J.A. and Wong,M.A. (1979) A K-means clustering algorithm. Appl. Stat.,28, 100-108.
-
(1979)
Appl. Stat.
, vol.28
, pp. 100-108
-
-
Hartigan, J.A.1
Wong, M.A.2
-
18
-
-
0038244058
-
Gene expression predictors of breast cancer outcomes
-
Huang,E. et al. (2003) Gene expression predictors of breast cancer outcomes. Lancet, 361, 1590-1596.
-
(2003)
Lancet
, vol.361
, pp. 1590-1596
-
-
Huang, E.1
-
19
-
-
18244384210
-
Multiple-laboratory comparison of microarray platforms
-
Irizarry,R.A. et al. (2005) Multiple-laboratory comparison of microarray platforms. Nat. Methods, 2, 345-350.
-
(2005)
Nat. Methods
, vol.2
, pp. 345-350
-
-
Irizarry, R.A.1
-
20
-
-
41149167129
-
Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package annotationTools
-
Kuhn,A. et al. (2008) Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package annotationTools. BMC Bioinformatics, 9, 26.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 26
-
-
Kuhn, A.1
-
21
-
-
33748961513
-
A comparison of univariate and multivariate gene selection techniques for classification of cancer datasets
-
Lai,C. et al. (2006) A comparison of univariate and multivariate gene selection techniques for classification of cancer datasets. BMC Bioinformatics, 7, 235.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 235
-
-
Lai, C.1
-
22
-
-
0035874995
-
Human prostate cancer and benign prostatic hyperplasia: molecular dissection by gene expression profiling
-
Luo,J. et al. (2001) Human prostate cancer and benign prostatic hyperplasia: molecular dissection by gene expression profiling. Cancer Res., 61, 4683-4688.
-
(2001)
Cancer Res.
, vol.61
, pp. 4683-4688
-
-
Luo, J.1
-
24
-
-
33745736739
-
Cross-platform classification in microarray-based leukemia diagnostics
-
Nilsson,B. et al. (2006) Cross-platform classification in microarray-based leukemia diagnostics. Haematologica, 91, 821-824.
-
(2006)
Haematologica
, vol.91
, pp. 821-824
-
-
Nilsson, B.1
-
25
-
-
34147177060
-
Averaged gene expressions for regression
-
Park,M.Y. et al. (2007) Averaged gene expressions for regression. Biostatistics, 8, 212-227.
-
(2007)
Biostatistics
, vol.8
, pp. 212-227
-
-
Park, M.Y.1
-
26
-
-
4143151607
-
Current issues for DNAmicroarrays: platform comparison, double linear amplification, and universal RNA reference
-
Park,P.J. et al. (2004) Current issues for DNAmicroarrays: platform comparison, double linear amplification, and universal RNA reference. J. Biotechnol., 112, 225-245.
-
(2004)
J. Biotechnol.
, vol.112
, pp. 225-245
-
-
Park, P.J.1
-
27
-
-
2942534096
-
Integrated modeling of clinical and gene expression information for personalized prediction of disease outcomes
-
Pittman,J. et al. (2004) Integrated modeling of clinical and gene expression information for personalized prediction of disease outcomes. Proc. Natl Acad. Sci. USA, 101, 8431-8436.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 8431-8436
-
-
Pittman, J.1
-
28
-
-
33746875641
-
Agenomic strategy to refine prognosis in early-stage non-small-cell lung cancer
-
Potti,A. etal. (2006)Agenomic strategy to refine prognosis in early-stage non-small-cell lung cancer. N. Engl. J. Med., 355, 570-580.
-
(2006)
N. Engl. J. Med.
, vol.355
, pp. 570-580
-
-
Potti, A.1
-
29
-
-
48349087525
-
Promises and caveats of in silico biomarker discovery
-
Pusztai,L. and Leyland-Jones,B. (2008) Promises and caveats of in silico biomarker discovery. Br. J. Cancer, 99, 385-386.
-
(2008)
Br. J. Cancer
, vol.99
, pp. 385-386
-
-
Pusztai, L.1
Leyland-Jones, B.2
-
30
-
-
0037226593
-
Amolecular signature of metastasis in primary solid tumors
-
Ramaswamy,S. et al. (2003) Amolecular signature of metastasis in primary solid tumors. Nat. Genet., 33, 49-54.
-
(2003)
Nat. Genet.
, vol.33
, pp. 49-54
-
-
Ramaswamy, S.1
-
31
-
-
6944244084
-
Amodule map showing conditional activity of expression modules in cancer
-
Segal,E. et al. (2004)Amodule map showing conditional activity of expression modules in cancer. Nat. Genet., 36, 1090-1098.
-
(2004)
Nat. Genet.
, vol.36
, pp. 1090-1098
-
-
Segal, E.1
-
32
-
-
27644528185
-
Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential
-
Shi,L. et al. (2005) Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential. BMC Bioinformatics, 6 (Suppl. 2), S12.
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 2
-
-
Shi, L.1
-
33
-
-
8444246272
-
QA/QC: challenges and pitfalls facing the microarray community and regulatory agencies
-
Shi,L. et al. (2004) QA/QC: challenges and pitfalls facing the microarray community and regulatory agencies. Expert Rev. Mol. Diagn., 4, 761-777.
-
(2004)
Expert Rev. Mol. Diagn.
, vol.4
, pp. 761-777
-
-
Shi, L.1
-
34
-
-
0035845511
-
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
-
Sorlie,T. et al. (2001) Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc. Natl Acad. Sci. USA, 98, 10869-10874.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 10869-10874
-
-
Sorlie, T.1
-
35
-
-
0036457915
-
Prediction and uncertainty in the analysis of gene expression profiles
-
Spang,R. et al. (2002) Prediction and uncertainty in the analysis of gene expression profiles. In Silico Biol., 2, 369-381.
-
(2002)
In Silico Biol.
, vol.2
, pp. 369-381
-
-
Spang, R.1
-
36
-
-
34347219009
-
Metagene projection for cross-platform, cross-species characterization of global transcriptional states
-
Tamayo,P. et al. (2007) Metagene projection for cross-platform, cross-species characterization of global transcriptional states. Proc. Natl Acad. Sci. USA, 104, 5959-5964.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 5959-5964
-
-
Tamayo, P.1
-
37
-
-
0141905890
-
Evaluation of gene expression measurements from commercial microarray platforms
-
Tan,P.K. et al. (2003) Evaluation of gene expression measurements from commercial microarray platforms. Nucleic Acids Res., 31, 5676-5684.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 5676-5684
-
-
Tan, P.K.1
-
38
-
-
33750021210
-
Evaluation and comparison of gene clustering methods in microarray analysis
-
Thalamuthu,A. et al. (2006) Evaluation and comparison of gene clustering methods in microarray analysis. Bioinformatics, 22, 2405-2412.
-
(2006)
Bioinformatics
, vol.22
, pp. 2405-2412
-
-
Thalamuthu, A.1
-
39
-
-
0037076272
-
Diagnosis of multiple cancer types by shrunken centroids of gene expression
-
Tibshirani,R. et al. (2002) Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc. Natl Acad. Sci. USA, 99, 6567-6572.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 6567-6572
-
-
Tibshirani, R.1
-
40
-
-
34548784943
-
Penalized and weighted K-means for clustering with scattered objects and prior information in high-throughput biological data
-
Tseng,G.C. (2007) Penalized and weighted K-means for clustering with scattered objects and prior information in high-throughput biological data. Bioinformatics, 23, 2247-2255.
-
(2007)
Bioinformatics
, vol.23
, pp. 2247-2255
-
-
Tseng, G.C.1
-
41
-
-
15044346962
-
Tight clustering: a resampling-based approach for identifying stable and tight patterns in data
-
Tseng,G.C. and Wong,W.H. (2005) Tight clustering: a resampling-based approach for identifying stable and tight patterns in data. Biometrics, 61, 10-16.
-
(2005)
Biometrics
, vol.61
, pp. 10-16
-
-
Tseng, G.C.1
Wong, W.H.2
-
42
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van't Veer,L.J. et al. (2002) Gene expression profiling predicts clinical outcome of breast cancer. Nature, 415, 530-536.
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
van't Veer, L.J.1
-
43
-
-
42349111720
-
Module-based outcome prediction using breast cancer compendia
-
van Vliet,M.H. et al. (2007) Module-based outcome prediction using breast cancer compendia. PLoS ONE, 2, e1047.
-
(2007)
PLoS ONE
, vol.2
-
-
van Vliet, M.H.1
-
44
-
-
0035881732
-
Analysis of gene expression identifies candidate markers and pharmacological targets in prostate cancer
-
Welsh,J.B. et al. (2001) Analysis of gene expression identifies candidate markers and pharmacological targets in prostate cancer. Cancer Res., 61, 5974-5978.
-
(2001)
Cancer Res.
, vol.61
, pp. 5974-5978
-
-
Welsh, J.B.1
-
45
-
-
0035949684
-
Predicting the clinical status of human breast cancer by using gene expression profiles
-
West,M. et al. (2001) Predicting the clinical status of human breast cancer by using gene expression profiles. Proc. Natl Acad. Sci. USA, 98, 11462-11467.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 11462-11467
-
-
West, M.1
-
46
-
-
33745145845
-
Embracing the complexity of genomic data for personalized medicine
-
West,M. et al. (2006) Embracing the complexity of genomic data for personalized medicine. Genome Res., 16, 559-566.
-
(2006)
Genome Res.
, vol.16
, pp. 559-566
-
-
West, M.1
-
47
-
-
39049127598
-
Revealing targeted therapy for human cancer by gene module maps
-
Wong,D.J. et al. (2008) Revealing targeted therapy for human cancer by gene module maps. Cancer Res., 68, 369-378.
-
(2008)
Cancer Res.
, vol.68
, pp. 369-378
-
-
Wong, D.J.1
-
48
-
-
4344561557
-
Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy
-
Yu,Y.P. et al. (2004) Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy. J. Clin. Oncol., 22, 2790-2799.
-
(2004)
J. Clin. Oncol.
, vol.22
, pp. 2790-2799
-
-
Yu, Y.P.1
-
49
-
-
33646377650
-
Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data
-
Zhang,X. et al. (2006) Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data. BMC Bioinformatics, 7, 197.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 197
-
-
Zhang, X.1
|