Structural genomics of histone tail recognition

Bioinformatics

Volumn 26, Issue 20, 2010, Pages 2629-2630

  Wang, Minghua ^a   Mok, Man Wai ^b   Harper, Hong ^a   Lee, Wen Hwa ^a   Min, Jinrong ^b   Knapp, Stefan ^a   Oppermann, Udo ^a   Marsden, Brian ^a,c   Schapira, Matthieu ^b  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b UNIVERSITY OF TORONTO   (Canada)

^c UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE;

ARTICLE; BINDING SITE; CHEMISTRY; GENOMICS; METHODOLOGY; PROTEIN CONFORMATION; PROTEIN DATABASE;

BINDING SITES; DATABASES, PROTEIN; GENOMICS; HISTONES; PROTEIN CONFORMATION;

EID: 77957783579     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq491     Document Type: Article

References (23)

1. Abagyan,R. et al. (2006) Disseminating structural genomics data to the public: From a data dump to an animated story. Trends Biochem. Sci., 31, 76-78.
2. Adams-Cioaba,M.A. and Min,J. (2009) Structure and function of histone methylation binding proteins. Biochem. Cell Biol., 87, 93-105.
3. Berndsen,C.E. and Denu,J.M. (2008) Catalysis and substrate selection by histone/protein lysine acetyltransferases. Curr. Opin. Struct. Biol., 18, 682-689.
4. Chang,Y. et al. (2009) Structural basis for G9a-like protein lysine methyltransferase inhibition by BIX-01294. Nat. Struct. Mol. Biol., 16, 312-317.
5. Cheng,X. et al. (2005) Structural and sequence motifs of protein (histone) methylation enzymes. Annu. Rev. Biophys. Biomol. Struct., 34, 267-294.
6. Copeland,R.A. et al. (2009) Protein methyltransferases as a target class for drug discovery. Nat. Rev. Drug. Discov., 8, 724-732.
7. Culhane,J.C. et al. (2010) Comparative analysis of small molecules and histone substrate analogues as LSD1 lysine demethylase inhibitors. J. Am. Chem. Soc., 132, 3164-3176.
8. Fischle,W. et al. (2003a) Binary switches and modification cassettes in histone biology and beyond. Nature, 425, 475-479.
9. Fischle,W. et al. (2003b) Histone and chromatin cross-talk. Curr. Opin. Cell. Biol., 15, 172-183.
10. Garske,A.L. et al. (2010) Combinatorial profiling of chromatin binding modules reveals multisite discrimination. Nat. Chem. Biol., 6, 283-290.
11. Grewal,S.I. and Moazed,D. (2003) Heterochromatin and epigenetic control of gene expression. Science, 301, 798-802.
12. Horton,J.R. et al. (2010) Enzymatic and structural insights for substrate specificity of a family of jumonji histone lysine demethylases. Nat. Struct. Mol. Biol., 17, 38-43.
13. Jenuwein,T. and Allis,C.D. (2001) Translating the histone code. Science, 293, 1074-1080.
14. Kouzarides,T. (2007) Chromatin modifications and their function. Cell, 128, 693-705.
15. Latham,J.A. and Dent,S.Y. (2007) Cross-regulation of histone modifications. Nat. Struct. Mol. Biol., 14, 1017-1024.
16. Liu,F. et al. (2009) Discovery of a 2,4-diamino-7-aminoalkoxyquinazoline as a potent and selective inhibitor of histone lysine methyltransferase G9a. J. Med. Chem., 52, 7950-7953.
17. Macdonald,N. et al. (2005) Molecular basis for the recognition of phosphorylated and phosphoacetylated histone h3 by 14-3-3. Mol. Cell., 20, 199-211.
18. Marmorstein,R. and Trievel,R.C. (2009) Histone modifying enzymes: Structures, mechanisms, and specificities. Biochim. Biophys. Acta, 1789, 58-68.
19. Mujtaba,S. et al. (2007) Structure and acetyl-lysine recognition of the bromodomain. Oncogene, 26, 5521-5527.
20. Raush,E. et al. (2009) A new method for publishing three-dimensional content. PLoS ONE, 4, e7394.
21. Strahl,B.D. and Allis,C.D. (2000) The language of covalent histone modifications. Nature, 403, 41-45.
22. Stucki,M. et al. (2005) MDC1 directly binds phosphorylated histone H2AX to regulate cellular responses to DNA double-strand breaks. Cell, 123, 1213-1226.
23. Taverna,S.D. et al. (2007) How chromatin-binding modules interpret histone modifications: Lessons from professional pocket pickers. Nat. Struct. Mol. Biol., 14, 1025-1040.