Mitochondrial haplogroup N1a phylogeography, with implication to the origin of European farmers

BMC Evolutionary Biology

Volumn 10, Issue 1, 2010, Pages

  Palanichamy, Malliya Gounder ^a,b   Zhang, Cai Ling ^a   Mitra, Bikash ^a,c   Malyarchuk, Boris ^d   Derenko, Miroslava ^d   Chaudhuri, Tapas Kumar ^c   Zhang, Ya Ping ^a,b  

^a YUNNAN UNIVERSITY   (China)

^b KUNMING INSTITUTE OF ZOOLOGY   (China)

^c UNIVERSITY OF NORTH BENGAL   (India)

^d INSTITUTE OF BIOLOGICAL PROBLEMS OF THE NORTH   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

AGRICULTURAL PRACTICE; COLONIZATION; GENETIC ANALYSIS; GENOME; MITOCHONDRION; NEOLITHIC; PHYLOGEOGRAPHY;

MITOCHONDRIAL DNA;

AGRICULTURE; ARTICLE; CAUCASIAN; EUROPE; FEMALE; GENETICS; HAPLOTYPE; HUMAN; MALE; PHYLOGENY; PHYLOGEOGRAPHY; POPULATION GENETICS;

AGRICULTURE; DNA, MITOCHONDRIAL; EUROPE; EUROPEAN CONTINENTAL ANCESTRY GROUP; FEMALE; GENETICS, POPULATION; HAPLOTYPES; HUMANS; MALE; PHYLOGENY; PHYLOGEOGRAPHY;

EID: 77957728431     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-10-304     Document Type: Article

References (39)

1. AJ Ammerman LL Cavalli-Sforza, The Neolithic Transition and the Genetics of Population in Europe Princeton, NJ: Princeton University Press 1984
2. A Whittle, Europe in the Neolithic. The creation of New Worlds Cambridge, UK: Cambridge University Press 1996
3. Ancient DNA from the first European farmers in 7500-years-old Neolithic sites. W Haak P Forster B Bramanti S Matsumura G Brandt M Tanzer R Villems C Renfrew D Gronenborn KW Alt J Burger, Science 2005 310 5750 1016 1018 16284177
4. Genetic discontinuity between local hunter-gatherers and central Europe's first farmers. B Bramanti MG Thomas W Haak M Unterlaender P Jores K Tambets I Antanitis-Jacobs MN Haidle R Jankauskas CJ Kind F Lueth T Terberger J Hiller S Matsumura P Forster J Burger, Science 2009 326 5949 137 140 10.1126/science. 1176869 19729620
5. Human prehistory: hunting for the earliest farmers. P Row-Conwy, Curr Biol 2009 19 20 948 949 10.1016/j.cub.2009.09.054 19889371
6. Ancient DNA says Europe's first farmers came from afar. M Balter, Science 2009 325 5945 1189 10.1126/science.325-1189 19729623
7. Craniometric data supports demic diffusion model for the spread of agriculture into Europe. R Pinhasi N von Cramon-Taubadel, Plos one 2009 4 8 6747 10.1371/journal.pone.0006747 19707595
8. We are not our ancestors: evidence for discontinuity between prehistoric and modern Europeans. E Levy-Coffman, J Genet Geneal 2006 1 40 50
9. Phylogeographic analysis of mitochondrial DNA in northern Asian populations. M Derenko B Malyarchuk T Grzybowski G Denisova I Dambueva M Perkova C Dorzhu F Luzina HK Lee T Vanecek R Villems I Zakharov, Am J Hum Genet 2007 81 5 1025 1041 10.1086/522933 17924343
10. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. M van Oven M Kayser, Hum Mutat 2009 30 2 386 E394 http://www.phylotree.org 10.1002/humu.20921 18853457
11. Finnish mitochondrial DNA HVS-I and HVS-II population data. M Hedman A Brandstätter V Pimenoff P Sistonen JU Palo W Parson A Sajantila, Forensic Sci Int 2007 172 2-3 171 178 10.1016/j.forsciint.2006.09.012 17336475 (Pubitemid 47361587)
12. Northwest Siberian Khanty and Mansi in the junction of West and East Eurasian gene pools as revealed by uniparental markers. VN Pimenoff D Comas JU Palo G Vershubsky A Kozlov A Sajantila, Eur J Hum Genet 2008 16 10 1254 1264 10.1038/ejhg.2008.101 18506205
13. Concomitant replacement of language and mtDNA in South Caspian populations of Iran. I Nasidze D Quinque M Rahmani SA Alemohamad M Stoneking, Curr Biol 2006 16 7 668 673 10.1016/j.cub.2006.02.021 16581511
14. Migration waves to the Baltic Sea region. T Lappalainen V Laitinen E Salmela P Anderson K Huoponen ML Savontaus P Lahermo, Ann Hum Genet 2008 72 Pt3 337 348 10.1111/j.1469-1809.2007.00429.x 18294359
15. A database of mitochondrial DNA hypervariable regions I and II sequences of individuals from Slovakia. I Lehock M Baldovic L Kdasi E Metspalu, Forensic Sci Int Genet 2008 2 4 53 59 10.1016/j.fsigen.2007.12.008 19083829
16. Genetic variation in the enigmatic Altaian Kazakhs of South-Central Russia: insights into Turkic population history. O Gokcumen MC Dulik AA Pai SI Zhadanov S Rubinstein LP Osipova OV Andreenkov LE Tabikhanova MA Gubina D Labuda TG Schurr, Am J Phys Anthropol 2008 136 3 278 293 10.1002/ajpa.20802 18322915
17. Mitochondrial DNA diversity in Siberian Tatars of the Tobol-Irtysh basin. OY Naumova SY Rychkov IY Morozova SS Khaiat AV Semikov OV Zhukova, Genetika 2008 44 2 257 268 18619046
18. Mitochondrial DNA variability in populations and ethnic groups of Tatars of the Tobol-Irtysh basin. OY Naumova SY Rychkov OV Zhukova, Genetika 2009 45 9 1260 1269 19824547
19. Complex interactions of the Eastern and Western Slavic populations with other European groups as revealed by mitochondrial DNA analysis. T Grzybowski BA Malyarchuk MV Derenko MA Perkova J Bednarek M Woniak, Forensic Sci Int Genet 2007 1 2 141 147 10.1016/j.fsigen.2007.01.010 19083745
20. Mitochondrial DNA structure in the Arabian Peninsula. KK Abu-Amero JM Larruga VM Cabrera AM Gonzlez, BMC Evol Biol 2008 12 8 45 10.1186/1471-2148-8-45 (Pubitemid 351406294)
21. Generating population data for the EMPOP database - an overview of the mtDNA sequencing and data evaluation processes considering 273 Austrian control region sequences as example. A Brandstätter H Niederstätter M Pavlic P Grubwieser W Parson, Forensic Sci Int 2007 166 2-3 164 175 10.1016/j.forsciint. 2006.05.006 16829006
22. Mitochondrial DNA affinities at the Atlantic fringe of Europe. AM Gonzalez A Brehm JA Perez N Maca-Meyer C Flores VM Cabrera, Am J Phys Anthropol 2003 120 4 391 404 10.1002/ajpa.10168 12627534
23. Eurasian and African mitochondrial DNA influences in the Saudi Arabian population. KK Abu-Amero AM Gonzlez JM Larruga TM Bosley VM Cabrera, BMC Evol Biol 2007 1 7 32 10.1186/1471-2148-7-32 (Pubitemid 46365394)
24. Regional differences in the distribution of the sub-Saharan, West Eurasian, and South Asian mtDNA lineages in Yemen. V Cerny CJ Mulligan J Ridl M Zaloudkova CM Edens M Hajek L Pereira, Am J Phys Anthropol 2008 136 2 128 137 10.1002/ajpa.20784 18257024
25. Counting the founders: the matrilineal genetic ancestry of the Jewish Diaspora. DM Behar E Metspalu T Kivisild S Rosset S Tzur Y Hadid G Yudkovsky D Rosengarten L Pereira A Amorim I Kutuev D Gurwitz B Bonne-Tamir R Villems K Skorecki, Plos one 2008 3 4 2062 10.1371/journal.pone.0002062 18446216
26. Mitochondrial DNA control region variation in Dubai, United Arab Emirates. F Alshamali A Brandstätter B Zimmermann W Parson, Forensic Sci Int Genet 2008 2 1 9 10 10.1016/j.fsigen.2007.08.005 19083782
27. Mitochondrial control region sequences from northern Greece and Greek Cypriots. J Irwin J Saunier K Strouss C Paintner T Diegoli K Sturk L Kovatsi A Brandstatter MA Cariolou W Parson TJ Parsons, Int J Legal Med 2008 122 1 87 89 10.1007/s00414-007-0173-7 17492459 (Pubitemid 350276057)
28. The social context of the agricultural transition in Europe. M Zvelebil, Archaeogenetics: DNA and the population prehistory of Europe Cambridge, UK: McDonald Institute, Renfrew C, Boyle K, 2000 57 79
29. Phylogeny of mitochondrial DNA macrohaplogroup N in India, based on complete sequencing: implications for the peopling of South Asia. MG Palanichamy C Sun S Agrawal HJ Bandelt QP Kong F Khan CY Wang TK Chaudhuri V Palla YP Zhang, Am J Hum Genet 2004 75 6 966 978 10.1086/425871 15467980
30. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. RM Andrews I Kubacka PF Chinnery RN Lightowlers DM Turnbull N Howell, Nat Genet 1999 23 2 147 10.1038/13779 10508508
31. Disruptive mitochondrial DNA mutations in complex I subunits are markers of oncocytic phenotype in thyroid tumors. G Gasparre AM Porcelli E Bonora LF Pennisi M Toller L Iommarini A Ghelli M Moretti CM Betts GN Martinelli AR Ceroni F Curcio V Carelli M Rugolo G Tallini G Romeo, Proc Natl Acad Sci USA 2007 104 21 9001 9006 10.1073/pnas.0703056104 17517629
32. Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for the major African, Asian, and European haplogroups. C Herrnstadt JL Elson E Fahy G Preston DM Turnbull C Anderson SS Ghosh JM Olefsky MF Beal RE Davis N Howell, Am J Hum Genet 2002 70 5 1152 1171 10.1086/339933 11938495
33. Whole-mtDNA genome sequence analysis of ancient African lineages. MK Gonder HM Mortensen FA Reed A de Sousa SA Tishkoff, Mol Biol Evol 2007 24 3 757 768 10.1093/molbev/msl209 17194802
34. mtDNA variation among Greenland Eskimos: the edge of the Beringian expansion. J Saillard P Forster N Lynnerup HJ Bandelt S Nørby, Am J Hum Genet 2000 67 3 718 26 10.1086/303038 10924403
35. Natural selection shaped regional mtDNA variation in humans. D Mishmar E Ruiz-Pesini P Golik V Macaulay AG Clark S Hosseini M Brandon K Easley E Chen MD Brown RI Sukernik A Olckers DC Wallace, Proc Natl Acad Sci USA 2003 100 1 171 176 10.1073/pnas.0136972100 12509511
36. The role of selection in the evolution of human mitochondrial genomes. T Kivisild P Shen DP Wall B Do R Sung K Davis G Passarino PA Underhill C Scharfe A Torroni R Scozzari D Modiano A Coppa P de Knijff M Feldman LL Cavalli-Sforza PJ Oefner, Genetics 2006 172 1 373 387 10.1534/genetics.105.043901 16172508
37. Distinctive Paleo-Indian migration routes from Beringia marked by two rare mtDNA haplogroups. UA Perego A Achilli N Angerhofer M Accetturo M Pala A Olivieri BH Kashani KH Ritchie R Scozzari QP Kong NM Myres A Salas O Semino HJ Bandelt SR Woodward A Torroni, Curr Biol 2009 19 1 1 8 10.1016/j.cub.2008.11.058 19135370
38. Correcting for purifying selection: an improved human mitochondrial molecular clock. P Soares L Ermini N Thomson M Mormina T Rito A Rohl A Salas S Oppenheimer V Macaulay MB Richareds, Am J Hum Genet 2009 84 6 740 759 10.1016/j.ajhg.2009.05.001 19500773
39. Explaining the imperfection of the molecular clock of Hominid mitochondria. EL Loogvali T Kivisild T Margus R Villems, PLos one 2009 4 12 8260 10.1371/journal.pone.0008260 20041137