Comparative analyses of different surfactants on matrix-assisted laser desorption/ionization mass spectrometry peptide analysis

European Journal of Mass Spectrometry

Volumn 16, Issue 5, 2010, Pages 567-575

  Mandal, Santi M ^a   Dey, Satyahari ^a   Mandal, Mahitosh ^a   Maria Neto, Simone ^b   Franco, Octavio L ^b  

^a INDIAN INSTITUTE OF TECHNOLOGY   (India)

^b UCB PHARMA   (Belgium)

Author keywords

Matrix assisted laser desorption ionization mass spectrometry; Molecular modeling; Sodium dodecyl sulfate; Surfactant; Tergitol

Indexed keywords

DESORPTION; HYDROPHOBICITY; MASS SPECTROMETRY; MOLECULAR BIOLOGY; MOLECULAR MODELING; PEPTIDES; POSITIVE IONS; SULFUR COMPOUNDS; SURFACE ACTIVE AGENTS;

AMPHIPATHIC PEPTIDES; COMPARATIVE ANALYSIS; HYDROPHOBIC PEPTIDES; LOW CONCENTRATIONS; LOW MOLECULAR MASS; MATRIX-ASSISTED LASER DESORPTION/IONIZATION MASS SPECTROMETRY; MOLECULAR MODELING ANALYSIS; TERGITOL;

SODIUM DODECYL SULFATE;

EID: 77957703396     PISSN: 14690667     EISSN: None     Source Type: Journal    
DOI: 10.1255/ejms.1097     Document Type: Article

References (28)

1. M. Ihara, K. Ishikawa, T. Fukuroda, T. Saeki, K. Funabashi, T. Fukami, H. Suda and M. Yano, "In vitro biological profile of a highly potent novel endothelin (ET) antagonist BQ-123 selective for the ETA receptor", J. Cardiovasc. Pharmacol. 20, S11 (1992).
2. A. Yiotakis, A. Lecoq, S. Vassiliou, I. Raynal, P. Cuniasse and V. Dive, "Cyclic peptides with a phosphinic bond as potent inhibitors of a zinc bacterial collagenase", J. Med. Chem. 37, 2713 (1994). doi: 10.1021/jm00043a011
3. M. Almgren, "Mixed micelles and other structures in the solubilization of bilayer lipid membranes by surfactants", Biochim. Biophys. Acta 1508, 146 (2000). doi: 10.1016/S0005-2736(00)00309-6
4. J.M. Neugebauer, Guide to Protein Purification. Academic Press, San Diego, CA, USA, pp. 239-253 (1990). doi: 10.1016/0076-6879(90)82020-3 (Pubitemid 20154391)
5. M. le Maire, P. Champeil and J.V. Moller, "Interaction of membrane proteins and lipids with solubilizing detergents", Biochim. Biophys. Acta 1508, 86 (2000). doi: 10.1016/S0304-4157(00)00010-1
6. P. Jungblut and B. Thiede, "Protein identification from 2-DE gels by MALDI mass spectrometry", Mass Spectrom. Rev. 16, 145 (1997). doi: 10.1002/(SICI)1098-2787(1997)16:3〈145::AID-MAS2〉3.0.CO;2-H
7. R.S. Brown and J.J. Lennon, "Mass resolution improvement by incorporation of pulsed ion extraction in a matrix-assisted laser desorption/ionization linear time-of-flight mass spectrometer", Anal. Chem. 67, 1998 (1995). doi: 10.1021/ac00109a015
8. M.L. Vestal, P. Juhasz and S.A. Martin, "Delayed extraction matrix-assisted laser desorption time-of-flight mass spectrometry", Rapid Commun. Mass Spectrom. 9, 1044 (1995). doi: 10.1002/rcm.1290091115
9. B. Rosinke, K. Strupat, F. Hillenkamp, J. Rosenbusch, N. Dencher, U. Kruger and H.-J. Galla, "Matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) of membrane proteins and non-covalent complexes", J. Mass Spectrom. 30, 1462 (1995). doi: 10.1002/jms.1190301012
10. V. Schnaible, J. Michels, K. Zeth, J. Freigang, W. Welte, S. Buehler, M.O. Glocker and M. Przybylski, "Approaches to the characterization of membrane channel proteins (porins) by UV MALDI-MS", J. Mass Spectrom. Ion Process. 169/170, 165 (1997). doi: 10.1016/S0168-1176(97)00226-7
11. M. Galvani and M. Hamdan, "Electroelution and passive elution of gamma-globulins from sodium dodecyl sulphate polyacrylamide gel electrophoresis gels for matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry", Rapid Commun. Mass Spectrom. 14, 721 (2000). doi: 10.1002/(SICI)1097-0231(20000430)14:8〈721::AID-RCM927〉3.0.CO;2-I
12. M.A. Jeannot, J. Zheng and L. Li, "Observation of gel-induced protein modifications in sodium dodecylsulfate polyacrylamide gel electrophoresis and its implications for accurate molecular weight determination of gel-separated proteins by matrix-assisted laser desorption ionization time-of-flight mass spectrometry", J. Am. Soc. Mass Spectrom. 10, 512 (1999). doi: 10.1016/S1044-0305(99)00022-7 (Pubitemid 34475117)
13. M. Puchades, A. Westman, K. Blennow and P. Davidsson, "Removal of sodium dodecyl sulfate from protein samples prior to matrix-assisted laser desorption/ionization mass spectrometry", Rapid Commun. Mass Spectrom. 13, 344 (1999). doi: 10.1002/(SICI)1097-0231(19990315)13:53.0.CO;2-V
14. S.Y. Chang, N.Y. Zheng, C.S. Chen, C.D. Chen, Y.Y. Chen and C.R. Wang, "Analysis of peptides and proteins affinity-bound to iron oxide nanoparticles by MALDI MS", J. Am. Soc. Mass Spectrom. 18, 910 (2007). doi: 10.1016/j.jasms.2007.01.011 (Pubitemid 46617281)
15. 3) nanoparticle assisted affinity probes for MALDI MS analysis of proteins", Eur. J. Mass Spectrom. 13, 359 (2007). doi: 10.1255/ejms.893
16. A. Sali and T.L. Blundell, "Comparative protein modelling by satisfaction of spatial restraints", J. Mol. Biol. 234, 779 (1993). doi: 10.1006/jmbi.1993.1626 (Pubitemid 24007801)
17. W.L. DeLano, "The pymol molecular graphics system", Version 1.2r3pre. Schrödinger, LLC, Portland, USA (2002).
18. N. Guex and M.C. Peitsch, "Swiss-model and the Swiss-PDB viewer: An environment for comparative protein modeling", Electrophoresis 18, 2714 (1997). doi: 10.1002/elps.1150181505 (Pubitemid 28059943)
19. B. Kramer, M. Rarey and T. Lengauer, "Evaluation of the FlexX incremental construction algorithm for protein-ligand docking", Proteins 37, 228 (1999). doi: 10.1002/(SICI)1097-0134(19991101)37:2〈228::AID- PROT8〉3.0.CO;2-8
20. R. Tummala, K.B. Green-Church and P.A. Limbach, "Interactions between sodium dodecyl sulfate micelles and peptides during matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) of proteolytic digests", J. Am. Soc. Mass Spectrom. 16, 1438 (2005). doi: 10.1016/j.jasms.2005.04.006 (Pubitemid 41169851)
21. S.D. Hanton, D.M. Parees and J. Zweigenbaum, "The fragmentation of ethoxylated surfactants by AP-MALDI-QIT", J. Am. Soc. Mass Spectrom. 17, 453 (2006). doi: 10.1016/j.jasms.2005.11.013 (Pubitemid 43290203)
22. F. Gharahdaghi, M. Kirchner, J. Fernandez and S.M. Mische, "Peptide-mass profiles of polyvinylidene difluoride-bound proteins by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry in the presence of nonionic detergents", Anal. Biochem. 233, 94 (1996). doi: 10.1006/abio.1996.0012 (Pubitemid 26036366)
23. F.M.L. Amado, M.G. Santana-Marques, A.J. Ferrer-Correia and K.B. Tomer, "Analysis of peptide and protein samples containing surfactants by MALDI-MS", Anal. Chem. 69, 1102 (1997). doi: 10.1021/ac9604043
24. A. Yonath, A. Podjarny, B. Honig, A. Sielecki and W. Traub, "Crystallographic studies of protein denaturation and renaturation. 2. Sodium dodecyl sulfate induced structural changes in triclinic lysozyme", Biochemistry 16, 1418 (1977). doi: 10.1021/bi00626a028
25. P. Mukerjee and K.J. Mysels, Critical Micelle Concentrations of Aqueous Surfactants Systems, National Standard Reference Data System. National Bureau of Standards 36, Washington, DC, USA, p. 222 (1971).
26. H. Sjogren, C.A. Ericsson, J. Evenas and S. Ulvenlund, "Interactions between charged polypeptides and nonionic surfactants", Biophys. J. 89, 4219 (2005). doi: 10.1529/biophysj.105.065342 (Pubitemid 41725641)
27. P. Zhou, E. Altman, M.B. Perry and J. Li, "Study of matrix additives for sensitive analysis of lipid A by matrix-assisted laser desorption ionization mass spectrometry", Appl. Environ. Microbiol. 76, 3437 (2010).
28. F. Xiang and R.C. Beavis, "Growing protein-doped sinapic acid crystals for laser desorption: An alternative preparation method for difficult samples", Org. Mass Spectrom. 28, 1424 (2005). doi: 10.1002/oms.1210281211