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Volumn 9, Issue 10, 2010, Pages 5438-5444

Precursor charge state prediction for electron transfer dissociation tandem mass spectra

Author keywords

charge state prediction; electron transfer dissociation; support vector machine; tandem mass spectrometry

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL REACTION; CLASSIFICATION ALGORITHM; COLLISIONALLY ACTIVATED DISSOCIATION; ELECTRON TRANSFER DISSOCIATION; PRIORITY JOURNAL; SUPPORT VECTOR MACHINE; TANDEM MASS SPECTROMETRY;

EID: 77957376545     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr1006685     Document Type: Article
Times cited : (10)

References (26)
  • 2
    • 36749068401 scopus 로고    scopus 로고
    • Performance characteristics of electron transfer dissociation mass spectrometry
    • Good, D. M.; Wirtala, M.; McAlister, G. C.; Coon, J. J. Performance characteristics of electron transfer dissociation mass spectrometry Mol. Cell. Proteomics 2007, 6 (11) 1942-51
    • (2007) Mol. Cell. Proteomics , vol.6 , Issue.11 , pp. 1942-1951
    • Good, D.M.1    Wirtala, M.2    McAlister, G.C.3    Coon, J.J.4
  • 3
    • 3042789073 scopus 로고    scopus 로고
    • Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry
    • Syka, J. E.; Coon, J. J.; Schroeder, M. J.; Shabanowitz, J.; Hunt, D. F. Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry Proc. Natl. Acad. Sci. U.S.A. 2004, 101 (26) 9528-33
    • (2004) Proc. Natl. Acad. Sci. U.S.A. , vol.101 , Issue.26 , pp. 9528-9533
    • Syka, J.E.1    Coon, J.J.2    Schroeder, M.J.3    Shabanowitz, J.4    Hunt, D.F.5
  • 4
    • 46849098407 scopus 로고    scopus 로고
    • Comprehensive comparison of collision induced dissociation and electron transfer dissociation
    • Molina, H.; Matthiesen, R.; Kandasamy, K.; Pandey, A. Comprehensive comparison of collision induced dissociation and electron transfer dissociation Anal. Chem. 2008, 80 (13) 4825-35
    • (2008) Anal. Chem. , vol.80 , Issue.13 , pp. 4825-4835
    • Molina, H.1    Matthiesen, R.2    Kandasamy, K.3    Pandey, A.4
  • 5
    • 33847782587 scopus 로고    scopus 로고
    • Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry
    • Molina, H.; Horn, D. M.; Tang, N.; Mathivanan, S.; Pandey, A. Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry Proc. Natl. Acad. Sci. U.S.A. 2007, 104 (7) 2199-204
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , Issue.7 , pp. 2199-2204
    • Molina, H.1    Horn, D.M.2    Tang, N.3    Mathivanan, S.4    Pandey, A.5
  • 6
    • 67049158217 scopus 로고    scopus 로고
    • Identification of protein O-GlcNAcylation sites using electron transfer dissociation mass spectrometry on native peptides
    • Chalkley, R. J.; Thalhammer, A.; Schoepfer, R.; Burlingame, A. L. Identification of protein O-GlcNAcylation sites using electron transfer dissociation mass spectrometry on native peptides Proc. Natl. Acad. Sci. U.S.A. 2009, 106 (22) 8894-9
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , Issue.22 , pp. 8894-8899
    • Chalkley, R.J.1    Thalhammer, A.2    Schoepfer, R.3    Burlingame, A.L.4
  • 7
    • 34249022000 scopus 로고    scopus 로고
    • Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer
    • McAlister, G. C.; Phanstiel, D.; Good, D. M.; Berggren, W. T.; Coon, J. J. Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer Anal. Chem. 2007, 79 (10) 3525-34
    • (2007) Anal. Chem. , vol.79 , Issue.10 , pp. 3525-3534
    • McAlister, G.C.1    Phanstiel, D.2    Good, D.M.3    Berggren, W.T.4    Coon, J.J.5
  • 9
    • 33845703344 scopus 로고    scopus 로고
    • What is a support vector machine
    • Noble, W. S. What is a support vector machine Nat. Biotechnol. 2006, 24 (12) 1565-7
    • (2006) Nat. Biotechnol. , vol.24 , Issue.12 , pp. 1565-1567
    • Noble, W.S.1
  • 10
    • 38349104744 scopus 로고    scopus 로고
    • Charger: Combination of signal processing and statistical learning algorithms for precursor charge-state determination from electron-transfer dissociation spectra
    • Sadygov, R. G.; Hao, Z.; Huhmer, A. F. Charger: combination of signal processing and statistical learning algorithms for precursor charge-state determination from electron-transfer dissociation spectra Anal. Chem. 2008, 80 (2) 376-86
    • (2008) Anal. Chem. , vol.80 , Issue.2 , pp. 376-386
    • Sadygov, R.G.1    Hao, Z.2    Huhmer, A.F.3
  • 11
    • 64749093752 scopus 로고    scopus 로고
    • Charge prediction machine: Tool for inferring precursor charge states of electron transfer dissociation tandem mass spectra
    • Carvalho, P. C.; Cociorva, D.; Wong, C. C.; Carvalho Mda, G.; Barbosa, V. C.; Yates, J. R., 3rd Charge prediction machine: tool for inferring precursor charge states of electron transfer dissociation tandem mass spectra Anal. Chem. 2009, 81 (5) 1996-2003
    • (2009) Anal. Chem. , vol.81 , Issue.5 , pp. 1996-2003
    • Carvalho, P.C.1    Cociorva, D.2    Wong, C.C.3    Carvalho Mda, G.4    Barbosa, V.C.5    Yates III, J.R.6
  • 12
    • 77957376359 scopus 로고    scopus 로고
    • The Mono Project
    • The Mono Project, http://www.mono-project.com.
  • 13
    • 56149086397 scopus 로고    scopus 로고
    • Decision tree-driven tandem mass spectrometry for shotgun proteomics
    • Swaney, D. L.; McAlister, G. C.; Coon, J. J. Decision tree-driven tandem mass spectrometry for shotgun proteomics Nat. Methods 2008, 5 (11) 959-64
    • (2008) Nat. Methods , vol.5 , Issue.11 , pp. 959-964
    • Swaney, D.L.1    McAlister, G.C.2    Coon, J.J.3
  • 14
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D. N.; Pappin, D. J.; Creasy, D. M.; Cottrell, J. S. Probability-based protein identification by searching sequence databases using mass spectrometry data Electrophoresis 1999, 20 (18) 3551-67
    • (1999) Electrophoresis , vol.20 , Issue.18 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 15
    • 3142702204 scopus 로고    scopus 로고
    • TANDEM: Matching proteins with tandem mass spectra
    • Craig, R.; Beavis, R. C. TANDEM: matching proteins with tandem mass spectra Bioinformatics 2004, 20, 1466-7
    • (2004) Bioinformatics , vol.20 , pp. 1466-1467
    • Craig, R.1    Beavis, R.C.2
  • 16
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng, J. K.; McCormack, A. L.; Yates, J. R., 3rd An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database J. Am. Soc. Mass Spectrom. 1994, 5, 976-89
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates III, J.R.3
  • 20
    • 33746930864 scopus 로고    scopus 로고
    • A uniform proteomics MS/MS analysis platform utilizing open XML file formats
    • Keller, A.; Eng, J.; Zhang, N.; Li, X. J.; Aebersold, R. A uniform proteomics MS/MS analysis platform utilizing open XML file formats Mol. Syst. Biol. 2005, 1, 2005-17
    • (2005) Mol. Syst. Biol. , vol.1 , pp. 2005-2017
    • Keller, A.1    Eng, J.2    Zhang, N.3    Li, X.J.4    Aebersold, R.5
  • 21
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • Keller, A.; Nesvizhskii, A. I.; Kolker, E.; Aebersold, R. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search Anal. Chem. 2002, 74 (20) 5383-92
    • (2002) Anal. Chem. , vol.74 , Issue.20 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4


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