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Volumn 71, Issue C, 2010, Pages 259-295

Epigenetic Databases and Computational Methodologies in the Analysis of Epigenetic Datasets

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATIN; COMPUTER ANALYSIS; DNA METHYLATION; GENETIC DATABASE; GENETIC EPIGENESIS; GENETICS; NEOPLASM; PHYSIOLOGY; REVIEW; TRANSCRIPTION INITIATION SITE;

EID: 77957345685     PISSN: 00652660     EISSN: None     Source Type: Book Series    
DOI: 10.1016/B978-0-12-380864-6.00009-2     Document Type: Book
Times cited : (7)

References (49)
  • 2
    • 3142665525 scopus 로고    scopus 로고
    • GOstat: find statistically overrepresented Gene Ontologies within a group of genes
    • Beissbarth T., Speed T.P. GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics 2004, 20:1464-1465.
    • (2004) Bioinformatics , vol.20 , pp. 1464-1465
    • Beissbarth, T.1    Speed, T.P.2
  • 4
    • 0033753779 scopus 로고    scopus 로고
    • The DNA methyltransferases of mammals
    • Bestor T.H. The DNA methyltransferases of mammals. Hum. Mol. Genet. 2000, 9:2395-2402.
    • (2000) Hum. Mol. Genet. , vol.9 , pp. 2395-2402
    • Bestor, T.H.1
  • 5
    • 27744577751 scopus 로고    scopus 로고
    • BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing
    • Bock C., Reither S., Mikeska T., Paulsen M., Walter J., Lengauer T. BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing. Bioinformatics 2005, 21:4067-4068.
    • (2005) Bioinformatics , vol.21 , pp. 4067-4068
    • Bock, C.1    Reither, S.2    Mikeska, T.3    Paulsen, M.4    Walter, J.5    Lengauer, T.6
  • 12
    • 34548561818 scopus 로고    scopus 로고
    • Beadarray: R classes and methods for Illumina bead-based data
    • Dunning M.J., Smith M.L., Ritchie M.E., Tavare S. Beadarray: R classes and methods for Illumina bead-based data. Bioinformatics 2007, 23:2183-2184.
    • (2007) Bioinformatics , vol.23 , pp. 2183-2184
    • Dunning, M.J.1    Smith, M.L.2    Ritchie, M.E.3    Tavare, S.4
  • 13
    • 0036371904 scopus 로고    scopus 로고
    • Combined bisulfite restriction analysis (COBRA)
    • Eads C.A., Laird P.W. Combined bisulfite restriction analysis (COBRA). Methods Mol. Biol. 2002, 200:71-85.
    • (2002) Methods Mol. Biol. , vol.200 , pp. 71-85
    • Eads, C.A.1    Laird, P.W.2
  • 14
    • 39849091039 scopus 로고    scopus 로고
    • MeInfoText: associated gene methylation and cancer information from text mining
    • Fang Y.C., Huang H.C., Juan H.F. MeInfoText: associated gene methylation and cancer information from text mining. BMC Bioinform. 2008, 9:22.
    • (2008) BMC Bioinform. , vol.9 , pp. 22
    • Fang, Y.C.1    Huang, H.C.2    Juan, H.F.3
  • 22
    • 60549105392 scopus 로고    scopus 로고
    • ContDist: a tool for the analysis of quantitative gene and promoter properties
    • Hackenberg M., Lasso G., Matthiesen R. ContDist: a tool for the analysis of quantitative gene and promoter properties. BMC Bioinform. 2009, 10:7.
    • (2009) BMC Bioinform. , vol.10 , pp. 7
    • Hackenberg, M.1    Lasso, G.2    Matthiesen, R.3
  • 24
    • 33751006151 scopus 로고    scopus 로고
    • RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis
    • Hong F., Breitling R., McEntee C.W., Wittner B.S., Nemhauser J.L., Chory J. RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis. Bioinformatics 2006, 22:2825-2827.
    • (2006) Bioinformatics , vol.22 , pp. 2825-2827
    • Hong, F.1    Breitling, R.2    McEntee, C.W.3    Wittner, B.S.4    Nemhauser, J.L.5    Chory, J.6
  • 26
    • 0036226603 scopus 로고    scopus 로고
    • BLAT--the BLAST-like alignment tool
    • Kent W.J. BLAT--the BLAST-like alignment tool. Genome Res. 2002, 12:656-664.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 27
    • 0027394890 scopus 로고
    • Methylation-sensitive DNA binding by v-myb and c-myb proteins
    • Klempnauer K.H. Methylation-sensitive DNA binding by v-myb and c-myb proteins. Oncogene 1993, 8:111-115.
    • (1993) Oncogene , vol.8 , pp. 111-115
    • Klempnauer, K.H.1
  • 28
    • 0015043748 scopus 로고
    • Mutation and cancer: statistical study of retinoblastoma
    • Knudson A.G. Mutation and cancer: statistical study of retinoblastoma. Proc. Natl. Acad. Sci. USA 1971, 68:820-823.
    • (1971) Proc. Natl. Acad. Sci. USA , vol.68 , pp. 820-823
    • Knudson, A.G.1
  • 30
    • 0036856355 scopus 로고    scopus 로고
    • MethPrimer: designing primers for methylation PCRs
    • Li L.C., Dahiya R. MethPrimer: designing primers for methylation PCRs. Bioinformatics 2002, 18:1427-1431.
    • (2002) Bioinformatics , vol.18 , pp. 1427-1431
    • Li, L.C.1    Dahiya, R.2
  • 37
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: the European Molecular Biology Open Software Suite
    • Rice P., Longden I., Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000, 16:276-277.
    • (2000) Trends Genet. , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 38
    • 75549086595 scopus 로고    scopus 로고
    • REBASE--a database for DNA restriction and modification: enzymes, genes and genomes
    • Roberts R.J., Vincze T., Posfai J., Macelis D. REBASE--a database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Res. 2010, 38:D234-D236.
    • (2010) Nucleic Acids Res. , vol.38
    • Roberts, R.J.1    Vincze, T.2    Posfai, J.3    Macelis, D.4
  • 40
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S., Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 2000, 132:365-386.
    • (2000) Methods Mol. Biol. , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 41
    • 58549108465 scopus 로고    scopus 로고
    • Epigenetic therapy upregulates the tumor suppressor microRNA-126 and its host gene EGFL7 in human cancer cells
    • Saito Y., Friedman J.M., Chihara Y., Egger G., Chuang J.C., Liang G. Epigenetic therapy upregulates the tumor suppressor microRNA-126 and its host gene EGFL7 in human cancer cells. Biochem. Biophys. Res. Commun. 2009, 379:726-731.
    • (2009) Biochem. Biophys. Res. Commun. , vol.379 , pp. 726-731
    • Saito, Y.1    Friedman, J.M.2    Chihara, Y.3    Egger, G.4    Chuang, J.C.5    Liang, G.6
  • 43
    • 33751355096 scopus 로고    scopus 로고
    • CREMOFAC--a database of chromatin remodeling factors
    • Shipra A., Chetan K., Rao M.R. CREMOFAC--a database of chromatin remodeling factors. Bioinformatics 2006, 22:2940-2944.
    • (2006) Bioinformatics , vol.22 , pp. 2940-2944
    • Shipra, A.1    Chetan, K.2    Rao, M.R.3
  • 47
    • 0029960055 scopus 로고    scopus 로고
    • TRANSFAC: a database on transcription factors and their DNA binding sites
    • Wingender E., Dietze P., Karas H., Knuppel R. TRANSFAC: a database on transcription factors and their DNA binding sites. Nucleic Acids Res. 1996, 24:238-241.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 238-241
    • Wingender, E.1    Dietze, P.2    Karas, H.3    Knuppel, R.4
  • 48
    • 68949141599 scopus 로고    scopus 로고
    • BSMAP: whole genome bisulfite sequence MAPping program
    • Xi Y., Li W. BSMAP: whole genome bisulfite sequence MAPping program. BMC Bioinform. 2009, 10:232.
    • (2009) BMC Bioinform. , vol.10 , pp. 232
    • Xi, Y.1    Li, W.2
  • 49
    • 77649274178 scopus 로고    scopus 로고
    • Methyl-Typing: An improved and visualized COBRA software for epigenomic studies
    • Yang C.H., Chuang L.Y., Cheng Y.H., Gu D.L., Chen C.H., Chang H.W. Methyl-Typing: An improved and visualized COBRA software for epigenomic studies. FEBS Lett 2009, 4:739-744.
    • (2009) FEBS Lett , vol.4 , pp. 739-744
    • Yang, C.H.1    Chuang, L.Y.2    Cheng, Y.H.3    Gu, D.L.4    Chen, C.H.5    Chang, H.W.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.