Laser-assisted single-molecule refolding (LASR)

Biophysical Journal

Volumn 99, Issue 6, 2010, Pages 1925-1931

  Zhao, Rui ^a   Marshall, Myles ^a   Alemán, Elvin A ^a   Lamichhane, Rajan ^a   Feig, Andrew ^a   Rueda, David ^a  

^a WAYNE STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 77957306513     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2010.07.019     Document Type: Article

References (23)

1. Treiber, D. K., and J. R. Williamson. 2001. Beyond kinetic traps in RNA folding. Curr. Opin. Struct. Biol. 11: 309-314.
2. Herschlag, D. 1995. RNA chaperones and the RNA folding problem. J. Biol. Chem. 270: 20871-20874.
3. Mikulecky, P. J., M. K. Kaw, A. L. Feig. 2004. Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs. Nat. Struct. Mol. Biol. 11: 1206-1214.
4. Russell, R. 2008. RNA misfolding and the action of chaperones. Front. Biosci. 13: 1-20.
5. Pyle, A. M. 2008. Translocation and unwinding mechanisms of RNA and DNA helicases. Annu. Rev. Biophys. 37: 317-336.
6. Reference deleted in proof.
7. Pyle, A. M. 2002. Metal ions in the structure and function of RNA. J. Biol. Inorg. Chem. 7: 679-690.
8. Woodson, S. A. 2005. Metal ions and RNA folding: a highly charged topic with a dynamic future. Curr. Opin. Chem. Biol. 9: 104-109.
9. Kirschner, K., M. Eigen, B. Voigt. 1966. The binding of nicotinamide-adenine dinucleotide to yeast d-glyceraldehyde-3-phosphate dehydrogenase: temperature-jump relaxation studies on the mechanism of an allosteric enzyme. Proc. Natl. Acad. Sci. USA. 56: 1661-1667.
10. Phillips, C. M., Y. Mizutani, and R. M. Hochstrasser. 1995. Ultrafast thermally induced unfolding of RNAse A. Proc. Natl. Acad. Sci. USA. 92: 7292-7296.
11. Ballew, R. M., J. Sabelko, and M. Gruebele. 1996. Observation of distinct nanosecond and microsecond protein folding events. Nat. Struct. Biol. 3: 923-926.
12. Proctor, D. J., H. Ma, P. C. Bevilacqua. 2004. Folding thermodynamics and kinetics of YNMG RNA hairpins: specific incorporation of 8-bromoguanosine leads to stabilization by enhancement of the folding rate. Biochemistry. 43: 14004-14014.
13. HITRAN. http://savi.weber.edu/hi-plot/. Accessed July 2007.
14. Reference deleted in proof.
15. Rueda, D., J. Hsieh, N. G. Walter. 2005. The 5' leader of precursor tRNAAsp bound to the Bacillus subtilis RNAse P holoenzyme has an extended conformation. Biochemistry. 44: 16130-16139.
16. Zhao, R., and D. Rueda. 2009. RNA folding dynamics by single-molecule fluorescence resonance energy transfer. Methods. 49: 112-117.
17. SantaLucia, Jr., J. 2000. The use of spectroscopic techniques in the study of DNA stability. In Spectrophotometry and Spectrofluorimetry. M. G. Gore, editor. Oxford University Press, Oxford.
18. Rastogi, T., T. L. Beattie., R. A. Collins. 1996. A long-range pseu-doknot is required for activity of the Neurospora VS ribozyme. EMBO J. 15: 2820-2825.
19. Guo, P., C. Zhang, M. Trottier. 1998. Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportation. Mol. Cell. 2: 149-155.
20. Ennifar, E., P. Walter, P. Dumas. 2001. Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site. Nat. Struct. Biol. 8: 1064-1068.
21. Moore, P. B., and T. A. Steitz. 2003. The structural basis of large ribosomal subunit function. Annu. Rev. Biochem. 72: 813-850.
22. Khvorova, A., A. Lescoute, S. D. Jayasena. 2003. Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity. Nat. Struct. Biol. 10: 708-712.
23. Lewis, B. P., I. H. Shih, . , C. B. Burge. 2003. Prediction of mammalian microRNA targets. Cell. 115: 787-798.