-
1
-
-
0036829064
-
Nuclear coupling: RNA processing reaches back to transcription
-
Manley, J.L. (2002) Nuclear coupling: RNA processing reaches back to transcription. Nat. Struct. Biol. 9, 790-791
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 790-791
-
-
Manley, J.L.1
-
2
-
-
0037107547
-
On the importance of being co-transcriptional
-
Neugebauer, K.M. (2002) On the importance of being co-transcriptional. J. Cell Sci. 115, 3865-3871
-
(2002)
J. Cell Sci.
, vol.115
, pp. 3865-3871
-
-
Neugebauer, K.M.1
-
3
-
-
4644334742
-
Multiple links between transcription and splicing
-
Kornblihtt, A.R., de la Mata, M., Fededa, J.P., Munoz, M.J. and Nogues, G. (2004) Multiple links between transcription and splicing. RNA 10, 1489-1498
-
(2004)
RNA
, vol.10
, pp. 1489-1498
-
-
Kornblihtt, A.R.1
De La Mata, M.2
Fededa, J.P.3
Munoz, M.J.4
Nogues, G.5
-
4
-
-
44649196386
-
Functional integration of transcriptional and RNA processing machineries
-
Pandit, S., Wang, D. and Fu, X.D. (2008) Functional integration of transcriptional and RNA processing machineries. Curr. Opin. Cell Biol. 20, 260-265
-
(2008)
Curr. Opin. Cell Biol.
, vol.20
, pp. 260-265
-
-
Pandit, S.1
Wang, D.2
Fu, X.D.3
-
5
-
-
70350005395
-
"Cotranscriptionality": The transcription elongation complex as a nexus for nuclear transactions
-
Perales, R. and Bentley, D. (2009) "Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions. Mol. Cell 36, 178-191
-
(2009)
Mol. Cell
, vol.36
, pp. 178-191
-
-
Perales, R.1
Bentley, D.2
-
6
-
-
0024021747
-
Splice site selection, rate of splicing, and alternative splicing on nascent transcripts
-
Beyer, A.L. and Osheim, Y.N. (1988) Splice site selection, rate of splicing, and alternative splicing on nascent transcripts. Genes Dev. 2, 754-765
-
(1988)
Genes Dev.
, vol.2
, pp. 754-765
-
-
Beyer, A.L.1
Osheim, Y.N.2
-
7
-
-
0041630999
-
Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast
-
Kotovic, K.M., Lockshon, D., Boric, L. and Neugebauer, K.M. (2003) Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast. Mol. Cell. Biol. 23, 5768-5779
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 5768-5779
-
-
Kotovic, K.M.1
Lockshon, D.2
Boric, L.3
Neugebauer, K.M.4
-
8
-
-
21244493903
-
Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex
-
DOI 10.1016/j.molcel.2005.05.007, PII S1097276505013134
-
Gornemann, J., Kotovic, K.M., Hujer, K. and Neugebauer, K.M. (2005) Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex. Mol. Cell 19, 53-63 (Pubitemid 40884657)
-
(2005)
Molecular Cell
, vol.19
, Issue.1
, pp. 53-63
-
-
Gornemann, J.1
Kotovic, K.M.2
Hujer, K.3
Neugebauer, K.M.4
-
9
-
-
33748351186
-
Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells
-
Listerman, I., Sapra, A.K. and Neugebauer, K.M. (2006) Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells. Nat. Struct. Mol. Biol. 13, 815-822
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 815-822
-
-
Listerman, I.1
Sapra, A.K.2
Neugebauer, K.M.3
-
10
-
-
21244469725
-
Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5′ss base pairing in yeast
-
Lacadie, S.A. and Rosbash, M. (2005) Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5′ss base pairing in yeast. Mol. Cell 19, 65-75
-
(2005)
Mol. Cell
, vol.19
, pp. 65-75
-
-
Lacadie, S.A.1
Rosbash, M.2
-
11
-
-
33746630487
-
In vivo commitment to yeast cotranscriptional splicing is sensitive to transcription elongation mutants
-
Lacadie, S.A., Tardiff, D.F., Kadener, S. and Rosbash, M. (2006) In vivo commitment to yeast cotranscriptional splicing is sensitive to transcription elongation mutants. Genes Dev. 20, 2055-2066
-
(2006)
Genes Dev.
, vol.20
, pp. 2055-2066
-
-
Lacadie, S.A.1
Tardiff, D.F.2
Kadener, S.3
Rosbash, M.4
-
12
-
-
33845654265
-
Differential recruitment of the splicing machinery during transcription predicts genome-wide patterns of mRNA splicing
-
Moore, M.J., Schwartzfarb, E.M., Silver, P.A. and Yu, M.C. (2006) Differential recruitment of the splicing machinery during transcription predicts genome-wide patterns of mRNA splicing. Mol. Cell 24, 903-915
-
(2006)
Mol. Cell
, vol.24
, pp. 903-915
-
-
Moore, M.J.1
Schwartzfarb, E.M.2
Silver, P.A.3
Yu, M.C.4
-
13
-
-
33745132168
-
Functional coupling of RNAP II transcription to spliceosome assembly
-
Das, R., Dufu, K., Romney, B., Feldt, M., Elenko, M. and Reed, R. (2006) Functional coupling of RNAP II transcription to spliceosome assembly. Genes Dev. 20, 1100-1109
-
(2006)
Genes Dev.
, vol.20
, pp. 1100-1109
-
-
Das, R.1
Dufu, K.2
Romney, B.3
Feldt, M.4
Elenko, M.5
Reed, R.6
-
14
-
-
33745220323
-
Linking splicing to Pol II transcription stabilizes pre-mRNAs and influences splicing patterns
-
Hicks, M.J., Yang, C.R., Kotlajich, M.V. and Hertel, K.J. (2006) Linking splicing to Pol II transcription stabilizes pre-mRNAs and influences splicing patterns. PLoS Biol. 4, e147
-
(2006)
PLoS Biol.
, vol.4
-
-
Hicks, M.J.1
Yang, C.R.2
Kotlajich, M.V.3
Hertel, K.J.4
-
15
-
-
34548367537
-
Concurrent splicing and transcription are not sufficient to enhance splicing efficiency
-
Lazarev, D. and Manley, J.L. (2007) Concurrent splicing and transcription are not sufficient to enhance splicing efficiency. RNA 13, 1546-1557
-
(2007)
RNA
, vol.13
, pp. 1546-1557
-
-
Lazarev, D.1
Manley, J.L.2
-
16
-
-
37249063572
-
Serine-7 of the RNA polymerase II CTD is specifically required for snRNA gene expression
-
Egloff, S., O'Reilly, D., Chapman, R.D., Taylor, A., Tanzhaus, K., Pitts, L., Eick, D. and Murphy, S. (2007) Serine-7 of the RNA polymerase II CTD is specifically required for snRNA gene expression. Science 318, 1777-1779
-
(2007)
Science
, vol.318
, pp. 1777-1779
-
-
Egloff, S.1
O'Reilly, D.2
Chapman, R.D.3
Taylor, A.4
Tanzhaus, K.5
Pitts, L.6
Eick, D.7
Murphy, S.8
-
17
-
-
70350389837
-
Phosphorylation of the yeast Rpb1 C-terminal domain at serines 2, 5, and 7
-
Kim, M., Suh, H., Cho, E.J. and Buratowski, S. (2009) Phosphorylation of the yeast Rpb1 C-terminal domain at serines 2, 5, and 7. J. Biol. Chem. 284, 26421-26426
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 26421-26426
-
-
Kim, M.1
Suh, H.2
Cho, E.J.3
Buratowski, S.4
-
18
-
-
10844238946
-
Expanding the functional repertoire of CTD kinase I and RNA polymerase II: Novel phosphoCTD-associating proteins in the yeast proteome
-
Phatnani, H.P., Jones, J.C. and Greenleaf, A.L. (2004) Expanding the functional repertoire of CTD kinase I and RNA polymerase II: novel phosphoCTD-associating proteins in the yeast proteome. Biochemistry 43, 15702-15719
-
(2004)
Biochemistry
, vol.43
, pp. 15702-15719
-
-
Phatnani, H.P.1
Jones, J.C.2
Greenleaf, A.L.3
-
19
-
-
44149124228
-
Cracking the RNA polymerase II CTD code
-
Egloff, S. and Murphy, S. (2008) Cracking the RNA polymerase II CTD code. Trends Genet. 24, 280-288
-
(2008)
Trends Genet.
, vol.24
, pp. 280-288
-
-
Egloff, S.1
Murphy, S.2
-
20
-
-
33751090746
-
Phosphorylation and functions of the RNA polymerase II CTD
-
Phatnani, H.P. and Greenleaf, A.L. (2006) Phosphorylation and functions of the RNA polymerase II CTD. Genes Dev. 20, 2922-2936
-
(2006)
Genes Dev.
, vol.20
, pp. 2922-2936
-
-
Phatnani, H.P.1
Greenleaf, A.L.2
-
21
-
-
0031037856
-
The C-terminal domain of RNA polymerase II couples mRNA processing to transcription
-
McCracken, S., Fong, N., Yankulov, K., Ballantyne, S., Pan, G., Greenblatt, J., Patterson, S.D., Wickens, M. and Bentley, D.L. (1997) The C-terminal domain of RNA polymerase II couples mRNA processing to transcription. Nature 385, 357-361
-
(1997)
Nature
, vol.385
, pp. 357-361
-
-
McCracken, S.1
Fong, N.2
Yankulov, K.3
Ballantyne, S.4
Pan, G.5
Greenblatt, J.6
Patterson, S.D.7
Wickens, M.8
Bentley, D.L.9
-
22
-
-
49449094610
-
A splicing regulator promotes transcriptional elongation
-
Fededa, J.P. and Kornblihtt, A.R. (2008) A splicing regulator promotes transcriptional elongation. Nat. Struct. Mol. Biol. 15, 779-781
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 779-781
-
-
Fededa, J.P.1
Kornblihtt, A.R.2
-
23
-
-
66649129884
-
Addendum: Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
-
Pan, Q., Shai, O., Lee, L.J., Frey, B.J. and Blencowe, B.J. (2009) Addendum: deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat. Genet. 41, 762
-
(2009)
Nat. Genet.
, vol.41
, pp. 762
-
-
Pan, Q.1
Shai, O.2
Lee, L.J.3
Frey, B.J.4
Blencowe, B.J.5
-
24
-
-
0036829698
-
Promoter proximal splice sites enhance transcription
-
DOI 10.1101/gad.983602
-
Furger, A., Binnie, J.M.O., Lee, B.A. and Proudfoot, N.J. (2002) Promoter proximal splice sites enhance transcription. Genes Dev. 16, 2792-2799 (Pubitemid 35253147)
-
(2002)
Genes and Development
, vol.16
, Issue.21
, pp. 2792-2799
-
-
Furger, A.1
O'Sullivan, J.M.2
Binnie, A.3
Lee, B.A.4
Proudfoot, N.J.5
-
25
-
-
38649096939
-
A 5′ splice site enhances the recruitment of basal transcription initiation factors in vivo
-
Damgaard, C.K., Kahns, S., Lykke-Andersen, S., Nielsen, A.L., Jensen, T.H. and Kjems, J. (2008) A 5′ splice site enhances the recruitment of basal transcription initiation factors in vivo. Mol. Cell 29, 271-278
-
(2008)
Mol. Cell
, vol.29
, pp. 271-278
-
-
Damgaard, C.K.1
Kahns, S.2
Lykke-Andersen, S.3
Nielsen, A.L.4
Jensen, T.H.5
Kjems, J.6
-
26
-
-
0035924345
-
Stimulatory effect of splicing factors on transcriptional elongation
-
Fong, Y.W. and Zhou, Q. (2001) Stimulatory effect of splicing factors on transcriptional elongation. Nature 414, 929-933
-
(2001)
Nature
, vol.414
, pp. 929-933
-
-
Fong, Y.W.1
Zhou, Q.2
-
27
-
-
34250363024
-
SR proteins function in coupling RNAP II transcription to pre-mRNA splicing
-
Das, R., Yu, J., Zhang, Z., Gygi, M.P., Krainer, A.R., Gygi, S.P. and Reed, R. (2007) SR proteins function in coupling RNAP II transcription to pre-mRNA splicing. Mol. Cell 26, 867-881
-
(2007)
Mol. Cell
, vol.26
, pp. 867-881
-
-
Das, R.1
Yu, J.2
Zhang, Z.3
Gygi, M.P.4
Krainer, A.R.5
Gygi, S.P.6
Reed, R.7
-
28
-
-
18844398607
-
A human splicing factor, SKIP, associates with P-TEFb and enhances transcription elongation by HIV-1 Tat
-
DOI 10.1101/gad.1291705
-
Bres, V., Gomes, N., Pickle, L. and Jones, K.A. (2005) A human splicing factor, SKIP, associates with P-TEFb and enhances transcription elongation by HIV-1 Tat. Genes Dev. 19, 1211-1226 (Pubitemid 40696187)
-
(2005)
Genes and Development
, vol.19
, Issue.10
, pp. 1211-1226
-
-
Bres, V.1
Gomes, N.2
Pickle, L.3
Jones, K.A.4
-
29
-
-
42249093677
-
Isolation of an active step I spliceosome and composition of its RNP core
-
Bessonov, S., Anokhina, M., Will, C.L., Urlaub, H. and Luhrmann, R. (2008) Isolation of an active step I spliceosome and composition of its RNP core. Nature 452, 846-850
-
(2008)
Nature
, vol.452
, pp. 846-850
-
-
Bessonov, S.1
Anokhina, M.2
Will, C.L.3
Urlaub, H.4
Luhrmann, R.5
-
30
-
-
0037273433
-
Identification and characterization of Prp45p and Prp46p, essential pre-mRNA splicing factors
-
Albers, M., Diment, A., Muraru, M., Russell, C.S. and Beggs, J.D. (2003) Identification and characterization of Prp45p and Prp46p, essential pre-mRNA splicing factors. RNA 9, 138-150
-
(2003)
RNA
, vol.9
, pp. 138-150
-
-
Albers, M.1
Diment, A.2
Muraru, M.3
Russell, C.S.4
Beggs, J.D.5
-
31
-
-
0031865048
-
CUS2, a yeast homolog of human Tat-SF1 rescues function of misfolded U2 through an unusual RNA recognition motif
-
Yan, D., Perriman, R., Igel, H., Howe, K.J., Neville, M. and Ares, Jr, M. (1998) CUS2, a yeast homolog of human Tat-SF1 rescues function of misfolded U2 through an unusual RNA recognition motif. Mol. Cell. Biol. 18, 5000-5009
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 5000-5009
-
-
Yan, D.1
Perriman, R.2
Igel, H.3
Howe, K.J.4
Neville, M.5
Ares Jr., M.6
-
32
-
-
58249093940
-
The SR protein family of splicing factors: Master regulators of gene expression
-
Long, J.C. and Caceres, J.F. (2009) The SR protein family of splicing factors: master regulators of gene expression. Biochem. J. 417, 15-27
-
(2009)
Biochem. J.
, vol.417
, pp. 15-27
-
-
Long, J.C.1
Caceres, J.F.2
-
33
-
-
49449116959
-
The splicing factor SC35 has an active role in transcriptional elongation
-
Lin, S., Coutinho-Mansfield, G., Wang, D., Pandit, S. and Fu, X.D. (2008) The splicing factor SC35 has an active role in transcriptional elongation. Nat. Struct. Mol. Biol. 15, 819-826
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 819-826
-
-
Lin, S.1
Coutinho-Mansfield, G.2
Wang, D.3
Pandit, S.4
Fu, X.D.5
-
34
-
-
67649671966
-
SR proteins in vertical integration of gene expression from transcription to RNA processing to translation
-
Zhong, X.Y., Wang, P., Han, J., Rosenfeld, M.G. and Fu, X.D. (2009) SR proteins in vertical integration of gene expression from transcription to RNA processing to translation. Mol. Cell 35, 1-10
-
(2009)
Mol. Cell
, vol.35
, pp. 1-10
-
-
Zhong, X.Y.1
Wang, P.2
Han, J.3
Rosenfeld, M.G.4
Fu, X.D.5
-
35
-
-
69949116888
-
When chromatin meets splicing
-
Kornblihtt, A.R., Schor, I.E., Allo, M. and Blencowe, B.J. (2009) When chromatin meets splicing. Nat. Struct. Mol. Biol. 16, 902-903
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 902-903
-
-
Kornblihtt, A.R.1
Schor, I.E.2
Allo, M.3
Blencowe, B.J.4
-
36
-
-
33745713437
-
It takes a PHD to read the histone code
-
Mellor, J. (2006) It takes a PHD to read the histone code. Cell 126, 22-24
-
(2006)
Cell
, vol.126
, pp. 22-24
-
-
Mellor, J.1
-
37
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides, T. (2007) Chromatin modifications and their function. Cell 128, 693-705
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
38
-
-
33847070442
-
The role of chromatin during transcription
-
Li, B., Carey, M. and Workman, J.L. (2007) The role of chromatin during transcription. Cell 128, 707-719
-
(2007)
Cell
, vol.128
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
40
-
-
61349098460
-
Differential chromatin marking of introns and expressed exons by H3K36me3
-
Kolasinska-Zwierz, P., Down, T., Latorre, I., Liu, T., Liu, X.S. and Ahringer, J. (2009) Differential chromatin marking of introns and expressed exons by H3K36me3. Nat. Genet. 41, 376-381
-
(2009)
Nat. Genet.
, vol.41
, pp. 376-381
-
-
Kolasinska-Zwierz, P.1
Down, T.2
Latorre, I.3
Liu, T.4
Liu, X.S.5
Ahringer, J.6
-
41
-
-
70349333201
-
Nucleosomes are well positioned in exons and carry characteristic histone modifications
-
Andersson, R., Enroth, S., Rada-Iglesias, A., Wadelius, C. and Komorowski, J. (2009) Nucleosomes are well positioned in exons and carry characteristic histone modifications. Genome Res. 19, 1732-1741
-
(2009)
Genome Res.
, vol.19
, pp. 1732-1741
-
-
Andersson, R.1
Enroth, S.2
Rada-Iglesias, A.3
Wadelius, C.4
Komorowski, J.5
-
42
-
-
69949132191
-
Chromatin organization marks exon-intron structure
-
Schwartz, S., Meshorer, E. and Ast, G. (2009) Chromatin organization marks exon-intron structure. Nat. Struct. Mol. Biol. 16, 990-995
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 990-995
-
-
Schwartz, S.1
Meshorer, E.2
Ast, G.3
-
43
-
-
70350013550
-
Biased chromatin signatures around polyadenylation sites and exons
-
Spies, N., Nielsen, C.B., Padgett, R.A. and Burge, C.B. (2009) Biased chromatin signatures around polyadenylation sites and exons. Mol. Cell 36, 245-254
-
(2009)
Mol. Cell
, vol.36
, pp. 245-254
-
-
Spies, N.1
Nielsen, C.B.2
Padgett, R.A.3
Burge, C.B.4
-
44
-
-
69949124307
-
Nucleosome positioning as a determinant of exon recognition
-
Tilgner, H., Nikolaou, C., Althammer, S., Sammeth, M., Beato, M., Valcarcel, J. and Guigo, R. (2009) Nucleosome positioning as a determinant of exon recognition. Nat. Struct. Mol. Biol. 16, 996-1001
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 996-1001
-
-
Tilgner, H.1
Nikolaou, C.2
Althammer, S.3
Sammeth, M.4
Beato, M.5
Valcarcel, J.6
Guigo, R.7
-
45
-
-
44449158814
-
Splicing, transcription, and chromatin: A ménage à trois
-
Allemand, E., Batsche, E. and Muchardt, C. (2008) Splicing, transcription, and chromatin: a ménage à trois. Curr. Opin. Genet. Dev. 18, 145-151
-
(2008)
Curr. Opin. Genet. Dev.
, vol.18
, pp. 145-151
-
-
Allemand, E.1
Batsche, E.2
Muchardt, C.3
-
46
-
-
68149120313
-
Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II
-
Hodges, C., Bintu, L., Lubkowska, L., Kashlev, M. and Bustamante, C. (2009) Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II. Science 325, 626-628
-
(2009)
Science
, vol.325
, pp. 626-628
-
-
Hodges, C.1
Bintu, L.2
Lubkowska, L.3
Kashlev, M.4
Bustamante, C.5
-
47
-
-
30044441988
-
The human SWI/SNF subunit Brm is a regulator of alternative splicing
-
Batsche, E., Yaniv, M. and Muchardt, C. (2006) The human SWI/SNF subunit Brm is a regulator of alternative splicing. Nat. Struct. Mol. Biol. 13, 22-29
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 22-29
-
-
Batsche, E.1
Yaniv, M.2
Muchardt, C.3
-
48
-
-
30044440197
-
Chromatin, transcript elongation and alternative splicing
-
Kornblihtt, A.R. (2006) Chromatin, transcript elongation and alternative splicing. Nat. Struct. Mol. Biol. 13, 5-7
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 5-7
-
-
Kornblihtt, A.R.1
-
49
-
-
0037336041
-
Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast
-
Xiao, T., Hall, H., Kizer, K.O., Shibata, Y., Hall, M.C., Borchers, C.H. and Strahl, B.D. (2003) Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast. Genes Dev. 17, 654-663
-
(2003)
Genes Dev.
, vol.17
, pp. 654-663
-
-
Xiao, T.1
Hall, H.2
Kizer, K.O.3
Shibata, Y.4
Hall, M.C.5
Borchers, C.H.6
Strahl, B.D.7
-
50
-
-
77149175671
-
Regulation of alternative splicing by histone modification
-
Luco, F.R., Pan, Q., Tominaga, K., Blencowe, B.J., Pereira-Smith, O. and Misteli, T. (2010) Regulation of alternative splicing by histone modification. Science 327, 996-1000
-
(2010)
Science
, vol.327
, pp. 996-1000
-
-
Luco, F.R.1
Pan, Q.2
Tominaga, K.3
Blencowe, B.J.4
Pereira-Smith, O.5
Misteli, T.6
-
51
-
-
77950555112
-
Chromatin: The final frontier in splicing regulation?
-
Fox-Walsh, K. and Fu, X.D. (2010) Chromatin: the final frontier in splicing regulation? Dev. Cell 18, 336-338
-
(2010)
Dev. Cell
, vol.18
, pp. 336-338
-
-
Fox-Walsh, K.1
Fu, X.D.2
-
52
-
-
37249034083
-
Coupling and coordination in gene expression processes: A systems biology view
-
Komili, S. and Silver, P.A. (2008) Coupling and coordination in gene expression processes: a systems biology view. Nat. Rev. Genet. 9, 38-48
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 38-48
-
-
Komili, S.1
Silver, P.A.2
-
53
-
-
33645832853
-
Systems-level analyses identify extensive coupling among gene expression machines
-
Maciag, K., Altschuler, S.J., Slack, M.D., Krogan, N.J., Emili, A., Greenblatt, J.F., Maniatis, T. and Wu, L.F. (2006) Systems-level analyses identify extensive coupling among gene expression machines. Mol. Syst. Biol. 2, 2006.0003
-
(2006)
Mol. Syst. Biol.
, vol.2
-
-
Maciag, K.1
Altschuler, S.J.2
Slack, M.D.3
Krogan, N.J.4
Emili, A.5
Greenblatt, J.F.6
Maniatis, T.7
Wu, L.F.8
-
54
-
-
34548507690
-
In vivo dynamics of RNA polymerase II transcription
-
Darzacq, X., Shav-Tal, Y., de, T., V, Brody, Y., Shenoy, S.M., Phair, R.D. and Singer, R.H. (2007) In vivo dynamics of RNA polymerase II transcription. Nat. Struct. Mol. Biol. 14, 796-806
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 796-806
-
-
Darzacq, X.1
Shav-Tal, Y.2
De, T.V.3
Brody, Y.4
Shenoy, S.M.5
Phair, R.D.6
Singer, R.H.7
-
55
-
-
11144274567
-
TFIIH operates through an expanded proximal promoter to fine-tune c-myc expression
-
Weber, A., Liu, J., Collins, I. and Levens, D. (2005) TFIIH operates through an expanded proximal promoter to fine-tune c-myc expression. Mol. Cell. Biol. 25, 147-161
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 147-161
-
-
Weber, A.1
Liu, J.2
Collins, I.3
Levens, D.4
-
56
-
-
38349008878
-
Fluctuations, pauses, and backtracking in DNA transcription
-
Voliotis, M., Cohen, N., Molina-Paris, C. and Liverpool, T.B. (2008) Fluctuations, pauses, and backtracking in DNA transcription. Biophys. J. 94, 334-348
-
(2008)
Biophys. J.
, vol.94
, pp. 334-348
-
-
Voliotis, M.1
Cohen, N.2
Molina-Paris, C.3
Liverpool, T.B.4
-
57
-
-
67649312058
-
Backtracking and proofreading in DNA transcription
-
Voliotis, M., Cohen, N., Molina-Paris, C. and Liverpool, T.B. (2009) Backtracking and proofreading in DNA transcription. Phys. Rev. Lett. 102, 258101
-
(2009)
Phys. Rev. Lett.
, vol.102
, pp. 258101
-
-
Voliotis, M.1
Cohen, N.2
Molina-Paris, C.3
Liverpool, T.B.4
-
58
-
-
0038402506
-
Computational modeling and experimental analysis of nonsense-mediated decay in yeast
-
DOI 10.1016/S0092-8674(03)00353-2
-
Cao, D. and Parker, R. (2003) Computational modeling and experimental analysis of nonsense-mediated decay in yeast. Cell 113, 533-545 (Pubitemid 36588754)
-
(2003)
Cell
, vol.113
, Issue.4
, pp. 533-545
-
-
Cao, D.1
Parker, R.2
-
59
-
-
70350754211
-
Rates of in situ transcription and splicing in large human genes
-
Singh, J. and Padgett, R.A. (2009) Rates of in situ transcription and splicing in large human genes. Nat. Struct. Mol. Biol. 16, 1128-1133
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1128-1133
-
-
Singh, J.1
Padgett, R.A.2
|