Heterogeneity and genetic variations of serotypes O and Asia 1 foot-and-mouth disease viruses isolated in Vietnam

Veterinary Microbiology

Volumn 145, Issue 3-4, 2010, Pages 220-229

  Le, Van Phan ^a,b   Nguyen, Tung ^c   Park, Jong Hyeon ^a   Kim, Su Mi ^a   Ko, Young Joon ^a   Lee, Hyang Sim ^a   Nguyen, Van Cam ^c   Mai, Thuy Duong ^c   Do, Thi Hoa ^c   Cho, In Soo ^a   Lee, Kwang Nyeong ^a  

^a Animal Plant and Fisheries Quarantine and Inspection Agency   (South Korea)

^b NATIONAL INSTITUTE OF VETERINARY RESEARCH   (Viet Nam)

^c National Center for Veterinary Diagnosis   (Viet Nam)

Author keywords

Foot and mouth disease virus; Phylogeny; Serotype Asia 1; Serotype O

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CLUSTER ANALYSIS; ENDEMIC DISEASE; FOOT AND MOUTH DISEASE VIRUS; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC HETEROGENEITY; NONHUMAN; PHYLOGENETIC TREE; SEROTYPE; VIET NAM; VIRAL GENETICS; VIRUS ISOLATION; VIRUS STRAIN;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CAPSID PROTEINS; CLUSTER ANALYSIS; DISEASE OUTBREAKS; FOOT-AND-MOUTH DISEASE; FOOT-AND-MOUTH DISEASE VIRUS; MOLECULAR SEQUENCE DATA; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; VIETNAM;

FOOT-AND-MOUTH DISEASE VIRUS; MYA;

EID: 77957274787     PISSN: 03781135     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.vetmic.2010.04.005     Document Type: Article

References (39)

1. Baxt B., Vakharia V., Moore D.M., Franke A.J., Morgan D.O. Analysis of neutralizing antigenic sites on the surface of type A12 foot-and-mouth disease virus. J. Virol. 1989, 63:2143-2151.
2. Belnap D.M., Filman D.J., Trus B.L., Cheng N., Booy F.P., Conway J.F., Curry S., Hiremath C.N., Tsang S.K., Steven A.C., Hogle J.M. Molecular tectonic model of virus structural transitions: the putative cell entry states of poliovirus. J. Virol. 2000, 74:1342-1354.
3. Bolwell C., Clarke B.E., Parry N.R., Ouldridge E.J., Brown F., Rowlands D.J. Epitope mapping of foot-and-mouth disease virus with neutralizing monoclonal antibodies. J. Gen. Virol. 1989, 70(Pt 1):59-68.
4. Burman A., Clark S., Abrescia N.G., Fry E.E., Stuart D.I., Jackson T. Specificity of the VP1 GH loop of foot-and-mouth disease virus for alphav integrins. J. Virol. 2006, 80:9798-9810.
5. Carrillo C., Lu Z., Borca M.V., Vagnozzi A., Kutish G.F., Rock D.L. Genetic and phenotypic variation of foot-and-mouth disease virus during serial passages in a natural host. J. Virol. 2007, 81:11341-11351.
6. Carrillo C., Tulman E.R., Delhon G., Lu Z., Carreno A., Vagnozzi A., Kutish G.F., Rock D.L. Comparative genomics of foot-and-mouth disease virus. J. Virol. 2005, 79:6487-6504.
7. Du J., Chang H., Cong G., Shao J., Lin T., Shang Y., Liu Z., Liu X., Cai X., Xie Q. Complete nucleotide sequence of a Chinese serotype Asia1 vaccine strain of foot-and-mouth disease virus. Virus Genes 2007, 35:635-642.
8. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
9. Felsenstein J. PHYLIP (Phylogenetic Inference Package), Version 3.5c 1993, Department of Genetics, University of Washington, Seattle, USA.
10. Garabed R.B., Johnson W.O., Thurmond M.C. Analytical epidemiology of genomic variation among Pan Asia strains of foot-and-mouth disease virus. Transbound Emerg. Dis. 2009, 56:142-156.
11. Gleeson L.J. A review of the status of foot and mouth disease in South-East Asia and approaches to control and eradication. Rev. Sci. Technol. 2002, 21:465-475.
12. Guo H., Liu X., Liu Z., Yin H., Ma J., Wang Y., Shang Y., Zhang Q., Li D., Guo J., Lu Z., Xie Q. Recent outbreaks of foot-and-mouth disease type Asia 1 in China. J. Vet. Med. B: Infect. Dis. Vet. Public Health 2006, 53:29-33.
13. Haydon D.T., Bastos A.D., Knowles N.J., Samuel A.R. Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates. Genetics 2001, 157:7-15.
14. Hoang V.N. Proceedings of the 15th Meeting of the OIE Sub-Commission for Foot and Mouth Disease in South-East Asia 2009.
15. Jackson T., King A.M., Stuart D.I., Fry E. Structure and receptor binding. Virus Res. 2003, 91:33-46.
16. Jukes T.H., Cantor C.R. Evolution of protein molecules. Mammalian Protein Metabolism 1969, vol. 3:21-132. Academic Press, New York.
17. Khounsy S., Conlan J.V., Gleeson L.J., Westbury H.A., Colling A., Paton D.J., Ferris N.P., Valarcher J.F., Wadsworth J., Knowles N.J., Blacksell S.D. Molecular epidemiology of foot-and-mouth disease viruses from South East Asia 1998-2006: the Lao perspective. Vet. Microbiol. 2009, 137:178-183.
18. Kitching R.P. Global epidemiology and prospects for control of foot-and-mouth disease. Curr. Top. Microbiol. Immunol. 2005, 288:133-148.
19. Kitching R.P., Knowles N.J., Samuel A.R., Donaldson A.I. Development of foot-and-mouth disease virus strain characterisation-a review. Trop. Anim. Health Prod. 1989, 21:153-166.
20. Knowles N.J., Samuel A.R. Molecular epidemiology of foot-and-mouth disease virus. Virus Res. 2003, 91:65-80.
21. Knowles N.J., Samuel A.R., Davies P.R., Midgley R.J., Valarcher J.F. Pandemic strain of foot-and-mouth disease virus serotype O. Emerg. Infect. Dis. 2005, 11:1887-1893.
22. Le V.P., Nguyen T., Lee K.N., Ko Y.J., Lee H.S., Nguyen V.C., Mai T.D., Do T.H., Kim S.M., Cho I.S., Park J.H. Molecular characterization of serotype A foot-and-mouth disease viruses circulating in Vietnam in 2009. Vet. Microbiol. 2010, (Epub ahead of print).
23. Lee K.N., Oem J.K., Park J.H., Kim S.M., Lee S.Y., Tserendorj S., Sodnomdarjaa R., Joo Y.S., Kim H. Evidence of recombination in a new isolate of foot-and-mouth disease virus serotype Asia 1. Virus Res. 2009, 139:117-121.
24. Lole K.S., Bollinger R.C., Paranjape R.S., Gadkari D., Kulkarni S.S., Novak N.G., Ingersoll R., Sheppard H.W., Ray S.C. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 1999, 73:152-160.
25. Martinez M.A., Dopazo J., Hernandez J., Mateu M.G., Sobrino F., Domingo E., Knowles N.J. Evolution of the capsid protein genes of foot-and-mouth disease virus: antigenic variation without accumulation of amino acid substitutions over six decades. J. Virol. 1992, 66:3557-3565.
26. Mateu M.G. Antibody recognition of picornaviruses and escape from neutralization: a structural view. Virus Res. 1995, 38:1-24.
27. Morrissy, C., 2005. Controlling FMD in Vietnam .
28. Morrissy C., Wright L., Hoa D.M., Vu P.P., Phong N.T., Vu L.H., Pritchard I., Riddell S., Schafer D., Eagles D., Ha W., Goff W., Hammond J., Juzva S., Johnson M., Daniels P. Development of an Improved Capability in Support of National Bio-security for the Surveillance and Control of Foot-and-Mouth Disease in Cattle and Pigs in Viet Nam 2008, European Commission for the Control of Foot-and-Mouth Disease (The global control of FMD-tools, ideas and ideals), Erice, Italy.
29. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
30. Sakamoto K., Yoshida K. Recent outbreaks of foot and mouth disease in countries of east Asia. Rev. Sci. Technol. 2002, 21:459-463.
31. Samuel A.R., Knowles N.J. Foot-and-mouth disease type O viruses exhibit genetically and geographically distinct evolutionary lineages (topotypes). J. Gen. Virol. 2001, 82:609-621.
32. Simmonds P. Recombination and selection in the evolution of picornaviruses and other mammalian positive-stranded RNA viruses. J. Virol. 2006, 80:11124-11140.
33. Tami C., Taboga O., Berinstein A., Nunez J.I., Palma E.L., Domingo E., Sobrino F., Carrillo E. Evidence of the coevolution of antigenicity and host cell tropism of foot-and-mouth disease virus in vivo. J. Virol. 2003, 77:1219-1226.
34. Thomas A.A., Woortmeijer R.J., Puijk W., Barteling S.J. Antigenic sites on foot-and-mouth disease virus type A10. J. Virol. 1988, 62:2782-2789.
35. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25:4876-4882.
36. Tosh C., Sanyal A., Hemadri D., Venkataramanan R. Phylogenetic analysis of serotype A foot-and-mouth disease virus isolated in India between 1977 and 2000. Arch. Virol. 2002, 147:493-513.
37. Tully D.C., Fares M.A. Unravelling selection shifts among foot-and-mouth disease virus (FMDV) serotypes. Evol. Bioinform. Online 2006, 2:237-251.
38. Valarcher J.F., Knowles N.J., Ferris N.P., Paton D.J., Zakharov V., Sherbakov A., Shang Y.J., Liu Z.X., Liu X.T., Sanyal A., Hemadri D., Tosh C., Rasool T.J. Recent spread of FMD virus serotype Asia 1. Vet. Rec. 2005, 157:30.
39. Valarcher J.F., Knowles N.J., Zakharov V., Scherbakov A., Zhang Z., Shang Y.J., Liu Z.X., Liu X.T., Sanyal A., Hemadri D., Tosh C., Rasool T.J., Pattnaik B., Schumann K.R., Beckham T.R., Linchongsubongkoch W., Ferris N.P., Roeder P.L., Paton D.J. Multiple origins of foot-and-mouth disease virus serotype Asia 1 outbreaks, 2003-2007. Emerg. Infect. Dis. 2009, 15:1046-1051.