Distribution and population genetics of the threatened freshwater crayfish genus Tenuibranchiurus (Decapoda:Parastacidae)

Marine and Freshwater Research

Volumn 61, Issue 9, 2010, Pages 1048-1055

  Dawkins, Kathryn L ^a   Furse, James M ^a   Wild, Clyde H ^a   Hughes, Jane M ^a  

^a GRIFFITH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

CLIMATE CHANGE; COASTAL ZONE; CONSERVATION MANAGEMENT; CRAYFISH; DIVERGENCE; ENDANGERED SPECIES; EXTINCTION RISK; FRESHWATER ECOSYSTEM; GENE; GENE FLOW; GENETIC DIFFERENTIATION; GEOGRAPHICAL DISTRIBUTION; HABITAT FRAGMENTATION; ISOLATED POPULATION; MIOCENE; MITOCHONDRIAL DNA; PLIOCENE; POPULATION DISTRIBUTION; SWAMP; URBAN DEVELOPMENT; URBAN POLLUTION;

AUSTRALIA; NEW SOUTH WALES; WOOLI;

ASTACOIDEA; PARASTACIDAE; TENUIBRANCHIURUS; TENUIBRANCHIURUS GLYPTICUS;

EID: 77957192494     PISSN: 13231650     EISSN: None     Source Type: Journal    
DOI: 10.1071/MF09294     Document Type: Article

References (61)

1. Austin, C. M., and Ryan, S. G. (2002). Allozyme evidence for a new species of freshwater crayfish of the genus Cherax Erichson (Decapoda: Parastacidae) from the south-west of Western Australia. Invertebrate Systematics 16, 357-367. doi:10.1071/IT01010 (Pubitemid 35273882)
2. Baker, A. M., Williams, S. A., and Hughes, J. M. (2003). Patterns of spatial genetic structuring in a hydropsychid caddisfly (Cheumatopsyche sp. AV1) from southeastern Australia. Molecular Ecology 12, 3313-3324. doi:10.1046/J.1365-294X.2003.02011.X (Pubitemid 37496693)
3. Baker, A. M., Hughes, J. M., Dean, J. C., and Bunn, S. E. (2004). Mitochondrial DNA reveals phylogenetic structuring and cryptic diversity in Australian freshwater macroinvertebrate assemblages. Marine and Freshwater Research 55, 629-640. doi:10.1071/MF04050 (Pubitemid 39333112)
4. Bentley, A. (2007). Phylogeographic structure of freshwater crayfish of the genus Cherax (Decapoda: Parastacidae) on the mainland and islands of southeast Queensland. BSc (Hons) Thesis, Griffith University, Nathan.
5. Bentley, A. I., Schmidt, D. J., and Hughes, J. M. (2010). Extensive intraspecific genetic diversity of a freshwater crayfish in a biodiversity hotspot. Freshwater Biology 55, 1861-1873. doi:10.1111/J.1365-2427. 2010.02420.X
6. Carini, G., and Hughes, J. M. (2004). Population structure of Macrobra-chium australiense (Decapoda: Palaemonidae) in Western Queensland, Australia: the role of contemporary and historical processes. Heredity 93, 350-363. doi:10.1038/SJ.HDY.6800510 (Pubitemid 39320585)
7. Chenoweth,S. F., and Hughes, J. M. (2003). Speciation and phylogeography in Caridina indistincta , a complex of freshwater shrimps from Australian heathland streams. Marine and Freshwater Research 54, 807-812. doi:10.1071/MF02168 (Pubitemid 38062159)
8. Clement, M., Posada, D., and Crandall, K. A. (2000). TCS: a computer program to estimate gene genealogies. Molecular Ecology 9, 1657-1659. doi:10.1046/J.1365-294X.2000.01020.X
9. Cook, B. D., Baker, A. M., Page, T. J., Grant, C., Fawcett, J. H., et al. (2006). Biogeographic history of an Australian freshwater shrimp, Paratya australiensis (Atyidae): the role of life history transition in phylogeo-graphic diversification. Molecular Ecology 15, 1083-1093. doi:10.1111/ J.1365-294X.2006.02852.X
10. Cook, B. D., Page, T. J., and Hughes, J. M. (2008a). Importance of cryptic species for identifying 'representative' units of biodiversity for freshwater conservation. Biological Conservation 141, 2821-2831. doi:10.1016/ J.BIOCON.2008.08.018
11. Cook, B. D., Pringle, C. M., and Hughes, J. M. (2008b). Molecular evidence for sequential colonization and taxon cycling in freshwater decapod shrimps on a Caribbean island. Molecular Ecology 17, 1066-1075. doi:10.1111/J.1365-294X.2007.03637.X (Pubitemid 351197364)
12. Crandall, K. A. (2002). Crayfish as model organisms. Freshwater Crayfish 13, 3-10.
13. Crandall, K. A., Fetzner,J.W., Lawler, S. H., Kinnersley, M., and Austin, C. M. (1999). Phylogenetic relationships among the Australian and New Zealand genera of freshwater crayfishes (Decapoda: Parastacidae). Australian Journal of Zoology 47, 199-214. doi:10.1071/ZO99011
14. de Bruyn, M., Wilson, J. A., and Mather, P. B. (2004). Huxley's line demarcates extensive genetic divergence between eastern and western forms of the giant freshwater prawn, Macrobrachium rosenbergii. Molecular Phylogenetics and Evolution 30, 251-257. doi:10.1016/ S1055-7903(03)00176-3 (Pubitemid 38092533)
15. Dieguez-Uribeondo, J., Royo, F., Souty-Grosset, C., Ropiquet, A., and Grandjean, F. (2008). Low genetic variability of the white-clawed crayfish in the Iberian Peninsula: its origin and management implications. Aquatic Conservation: Marine & Freshwater Ecosystems 18, 19-31. doi:10.1002/AQC.811 (Pubitemid 351251467)
16. Doyle, J. J., and Doyle, J. L. (1987). A rapid DNA isolation procedure for small quantities of leaf tissue. Phytochemical Bulletin 19, 11-15.
17. Excoffier, L., Laval, G., and Schneider, S. (2005). Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1, 47-50.
18. Fratini, S., Zaccara, S., Barbaresi, S., Grandjean, F., Souty-Grosset, C., et al. (2005). Phylogeography of the threatened crayfish (genus Austropota-mobius) in Italy: implications for its taxonomy and conservation. Heredity 94, 108-118. doi:10.1038/SJ.HDY.6800581 (Pubitemid 40020175)
19. Fu, Y.-X., and Li, W.-L. (1993). Statistical tests of neutrality of mutations. Genetics 133, 693-709.
20. GeneCodes (2000). 'Sequencher (Version 4.1.2).' (Gene Codes Corporation: Ann Arbor, MI.)
21. Gouin, N., Grandjean, F., and Souty-Grosset, C. (2006). Population genetic structure of the endangered crayfish Austropotamobius pallipes in France based on microsatellite variation: biogeographical inferences and conservation implications. Freshwater Biology 51, 1369-1387. doi:10.1111/J.1365-2427.2006. 01570.X (Pubitemid 43886528)
22. Harding, D., and Williamson,I. (2003). Anoteon the habitat requirements of the swamp crayfish on Bribie Island, southeastern Queensland. Memoirs of the Queensland Museum 49, 452.
23. Harding, D., and Williamson, I. (2004). The influence of light phase and predators on the behaviour of swamp crayfish. Memoirs of the Queensland Museum 49, 704.
24. Hartl, D. L., and Clark, A. G. (2007). 'Principles of Population Genetics.' 4th edn. (Sinauer Associates Inc. Publishers: Sunderland, MA.)
25. Horwitz, P. (1995). A preliminary key to the species of Decapoda (Crustacea: Malacostraca) found in Australian inland waters. Co-operative Research Centre for Freshwater Ecology, Albury, Australia.
26. Hughes, J. M., and Hillyer, M. J. (2003). Patterns of connectivity among populations of Cherax destructor (Decapoda:Parastacidae) in western Queensland, Australia. Marine and Freshwater Research 54, 587-596. doi:10.1071/MF03066 (Pubitemid 37261373)
27. Hughes, J. M., Ponniah, M., Hurwood, D. A., Chenoweth, S. F., and Arthington, A. (1999). Strong genetic structuring in a habitat specialist, the Oxleyan Pygmy Perch Nannoperca oxleyana. Heredity 83, 5-14. doi:10.1038/SJ.HDY. 6885390
28. Jenkins, M. (2003). Prospects for biodiversity. Science 302, 1175-1177. doi:10.1126/SCIENCE.1088666 (Pubitemid 37421014)
29. Joyce, K. (2006). 'Wetland Management Profile: Coastal Melaleuca Swamp Wetlands.' (Ecosystem Conservation Branch, EPA: Brisbane, Queensland.)
30. Katoh, K., Kuma, K.-I., Toh, H., and Miyata, T. (2005). MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research 33, 511-518. doi:10.1093/NAR/GKI198 (Pubitemid 40360980)
31. Knight, J. T., Nock, C. J., Elphinstone, M. S., and Baverstock, P. R. (2009). Conservation implications of distinct genetic structuring in the endangered freshwater fish Nannoperca oxleyana (Percichthyidae). Marine and Freshwater Research 60, 34-44. doi:10.1071/MF08022
32. Lindqvist, O. V., and Huner, J. V. (1999). Life history characteristics of crayfish: What makes some of them good colonizers? In 'Biotic Interactions and Global Change'. (Eds P. Kareiva, J. Kingsolver and R. Huey.) pp. 23-30. (Sinauer Associates Inc.: Sunderland, MA.)
33. Loh, J. (2002). 'Living. The Planetary Report, 2002.' (World Wide Fund for Nature International: Gland, Switzerland.)
34. Margules, C. R., and Pressey, R. L. (2000). Systematic conservation planning. Nature 405, 243-253. doi:10.1038/35012251 (Pubitemid 30313548)
35. Mills, C. E., Hadwen, W. L., and Hughes, J. M. (2008). Looking through glassfish: marine genetic structure in an estuarine species. Marine and Freshwater Research 59, 627-637. doi:10.1071/MF07215
36. Moritz, C. (1994). Defining 'evolutionarily significant units' for conservation. Trends in Ecology&Evolution 9, 373-375. doi:10.1016/0169-5347 (94)90057-4 (Pubitemid 2130029)
37. Morrison, C. L., Rios, R., and Duffy, J. E. (2004). Phylogenetic evidence for an ancient rapid radiation of Caribbean sponge-dwelling snapping shrimps (Synalpheus). Molecular Phylogenetics and Evolution 30, 563-581. doi:10.1016/S1055-7903(03)00252-5 (Pubitemid 38260960)
38. Nguyen, T. T. T., Meewan, M., Ryan, S., and Austin, C. M. (2002). Genetic diversity and translocation in the marron, Cherax tenuimanus (Smith): implications for management and conservation. Fisheries Management and Ecology 9, 163-173. doi:10.1046/J.1365-2400.2002.00289.X (Pubitemid 34657705)
39. Page, T. J., and Hughes, J. M. (2007). Phylogeographic structure in an Australian freshwater shrimp largely pre-dates the geological origins of its landscape. Heredity 98, 222-231. doi:10.1038/SJ.HDY.6800932 (Pubitemid 46496825)
40. Page, T. J., Sharma, S., and Hughes, J. M. (2004). Deep phylogenetic structure has conservation implications for ornate rainbow fish (Mela-notaeniidae: Rhadinocentrus ornatus) in Queensland, eastern Australia. Marine and Freshwater Research 55, 165-172. doi:10.1071/MF03139 (Pubitemid 38562872)
41. Palumbi, S. R., Martin, A., Romano, S., McMillan, W. O., Stice, L., et al. (1991). 'The Simple Fool's Guide to PCR.' (University of Hawaii Press: Honolulu.)
42. Ponniah, M., and Hughes, J. M. (2004). The evolution of Queensland spiny mountain crayfish of the genus Euastacus . I. Testing vicariance and dispersal with interspecific mitochondrial DNA. Evolution 58, 1073-1085.
43. Posada, D. (2008). jModelTest: Phylogenetic Model Averaging. Molecular Biology and Evolution 25, 1253-1256. doi:10.1093/MOLBEV/ MSN083 (Pubitemid 351882013)
44. Ricciardi, A., and Rasmussen, J. B. (1999). Extinction rates of North American freshwater fauna. Conservation Biology 13, 1220-1222. doi:10.1046/J.1523-1739.1999.98380.X (Pubitemid 29475553)
45. Riek, E. F. (1951). The freshwater crayfish (family Parastacidae) of Queensland, with an appendix describing other Australian species. Records of the Australian Museum 22, 368-388.
46. Riek, E. F. (1969). The Australian freshwater crayfish (Crustacea: Decapoda: Parastacidae), with descriptions of new species. Australian Journal of Zoology 17, 855-918. doi:10.1071/ZO9690855
47. Rode, A. L., and Babcock, L. E. (2003). Phylogeny of fossil and extant freshwater crayfish and some closely related nephropid lobsters. Journal of Crustacean Biology 23, 418-435. doi:10.1651/0278-0372(2003)023 [0418:POFAEF]2.0.CO;2
48. Santos, S. R. (2006). Patterns of genetic connectivity among anchialine habitats: a case study of the endemic Hawaiian shrimp Halocaridina rubra on the island of Hawaii. Molecular Ecology 15, 2699-2718.
49. Schubart, C. D., Diesel, R., and Hedges, S. B. (1998). Rapid evolution to terrestrial life in Jamaican crabs. Nature 393, 363-365. doi:10.1038/ 30724 (Pubitemid 28269708)
50. Schultz, M. B., Smith, S. A., Richardson, A. M. M., Horwitz, P., Crandall, K. A., et al. (2007). Cryptic diversity in Engaeus Erichson, Geocharax Clark and Gramastacus Riek (Decapoda: Parastacidae) revealed by mitochondrial 16S rDNA sequences. Invertebrate Systematics 21, 569-587. doi:10.1071/ IS07019 (Pubitemid 350292032)
51. Schultz,M.B., Smith,S.A., Horwitz, P., Richardson,A.M.M., Crandall,K.A., et al. (2009). Evolution underground: A molecular phylogenetic investigation of Australian burrowing freshwater crayfish (Decapoda: Parastacidae) with particular focus on Engaeus Erichson. Molecular Phylogenetics and Evolution 50, 580-598. doi:10.1016/J.YMPEV.2008.11.025
52. Sharma, S., and Hughes,J.M. (2009). Genetic structure and phylogeography of freshwater shrimps (Macrobrachium australiense and Macrobra-chium tolmerum): the role ofcontemporary and historical events. Marine and Freshwater Research 60, 541-553. doi:10.1071/MF07235
53. Slatkin, M. (1993). Isolation by distance in equilibrium and non-equilibrium populations. Evolution 47, 264-279. doi:10.2307/2410134
54. Stamatakis, A. (2006). RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bio-informatics 22, 2688-2690. doi:10.1093/BIOINFORMATICS/BTL446 (Pubitemid 44642609)
55. Stillman, J. H., and Reeb, C. A. (2001). Molecular phylogeny of eastern Pacific porcelain crabs, genera Petrolisthes and Pachycheles , based on the mtDNA 16S rDNA sequence: phylogeographic and systematic implications. Molecular Phylogenetics and Evolution 19, 236-245. doi:10.1006/MPEV.2001.0924 (Pubitemid 32996687)
56. Sturmbauer, C., Leninton, J. S., and Christy, J. (1996). Molecular phylogeny analysis of fiddler crabs: Test of the hypothesis of increasing behavioral complexity in evolution. Proceedings of the National Academy of Sciences of the United States of America 93, 10855-10857. doi:10.1073/PNAS.93. 20.10855 (Pubitemid 26333080)
57. *and other methods) (Version 4).' (Sinauer Associates: Sunderland, MA.)
58. Tajima, F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585-595.
59. Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007). MEGA 4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24, 1596-1599. doi:10.1093/MOLBEV/ MSM092 (Pubitemid 47236692)
60. Taylor, C. A., Schuster, G. A., Cooper, J. E., DiStefano, R. J., Eversole, A. G., et al. (2007). A reassessment of the conservation status of crayfishes of the United States and Canada after 10+ years of increased awareness. Fisheries 32, 372-389. doi:10.1577/1548-8446(2007)32[372:AROTCS] 2.0.CO;2
61. Wares, J. P., and Cunningham, C. W. (2001). Phylogeography and historical ecology of the North Atlantic intertidal. Evolution 55, 2455-2469.