Genetic diversity and plant-growth related features of Burkholderia spp. from sugarcane roots

World Journal of Microbiology and Biotechnology

Volumn 26, Issue 10, 2010, Pages 1829-1836

  Luvizotto, Danice M ^a   Marcon, Joelma ^b   Andreote, Fernando D ^a   Dini Andreote, Francisco ^a   Neves, Aline A C ^c   Araújo, Welington L ^c   Pizzirani Kleiner, Aline A ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b Biotechnology Center of Amazônia   (Brazil)

^c UNIVERSIDADE DE MOGI DAS CRUZES   (Brazil)

Author keywords

16S rRNA; Bacterial diversity; Burkholderia cepacia; Endophytic; gyrB; Rhizobacteria

Indexed keywords

16S RRNA; BACTERIAL DIVERSITY; BURKHOLDERIA CEPACIA; ENDOPHYTIC; GYRB; RHIZOBACTERIA;

BACTERIOLOGY; NITROGEN FIXATION; PHYSIOLOGY; RNA;

BIODIVERSITY;

BACTERIA (MICROORGANISMS); BURKHOLDERIA; BURKHOLDERIA CEPACIA; BURKHOLDERIA CEPACIA COMPLEX; RHIZOBIALES;

EID: 77956870633     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-010-0364-0     Document Type: Article

References (46)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
2. Andreote FD, Lacava PT, Gai CS, Araújo WL, Maccheroni W Jr, van Overbeek LS, van Elsas JD, Azevedo JL (2006) Model plants for studying the interaction between Methylobacterium mesophilicum and Xylella fastidiosa. Can J Microbiol 52: 419-426.
3. Andreote FD, Azevedo JL, Araújo WL (2009) Assessing the diversity of bacteria communities associated with plants. Braz J Microbiol 40: 417-432.
4. Araujo WL, Marcon J, Maccheroni W Jr, van Elsas JD, van Vuurde JWL, Azevedo JL (2002) Diversity of endophytic bacterial populations and their interaction with Xylella fastidiosa in citrus plants. Appl Environ Microbiol 68: 4906-4914.
5. Azegami K, Nishiyama K, Tabei H (1988) Infection courts of rice seedlings with Pseudomonas plantarii and Pseudomonas glumae. J Plant Dis Prot 54: 337-341.
6. Azevedo JL (1998) Biodiversidade microbiana e potencial Biotecnológico. In: Melo IS, Azevedo JL (ed) Ecologia microbiana. EMBRAPA-Meio Ambiente, Jaguariúna, pp 445-461.
7. Bric JM, Bostock RM, Silverstone S (1991) Rapid in situ assay for indoleacetic acid production by bacteria immobilized on a nitrocellulose membrane. Appl Environ Microbiol 57: 535-538.
8. Caballero-Mellado J, Martinez-Aguilar L, Paredes-Valdez G, Estrada-De los Santos P (2004) Burkholderia unamae sp. nov., an N2-fixing rhizospheric and endophytic species. Int J Syst Evol Microbiol 54: 1165-1172.
9. Coenye T, Vandamme P (2003) Diversity and significance of Burkholderia species occupying diverse ecological niches. Environ Microbiol 5: 719-729.
10. Coenye T, Vandamme P, Govan JRW, Lipuma JJ (2001) Minireview: taxonomy and identification of the Burkholderia cepacia complex. J Clin Microbiol 39: 3427-3436.
11. Copping LG, Menn JJ (2000) Biopesticides: a review of their action, applications and efficacy. Pest Manag Sci 56: 651-676.
12. Döbereiner J, Baldani VLD, Baldani JL (1995) Como isolar e identificar bactérias diazotróficas de plantas não-leguminosas. Embrapa-SPI, Brasília.
13. 2-fixing endophytic Burkholderia sp. associated with maize plants cultivated in Mexico. Can J Microbiol 48: 285-294.
14. Goldemberg J (2007) Ethanol for a sustainable energy future. Science 315: 808-810.
15. Goris J, de Vos P, Caballero-Mellado J, Park JH, Falsen E, Quensen JF III, Tiedje JM, Vandamme P (2004) Classification of the PCB- and biphenyl-degrading strain LB400 and relatives as Burkholderia xenovorans sp. nov. Int J Syst Evol Microbiol 54: 1677-1681.
16. Heuer H, Krsek M, Baker P, Smalla K, Wellington EMH (1997) Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl Environ Microbiol 63: 3233-3241.
17. Heungens K, Parke JL (2000) Zoospore homing and infection events: effects of the biocontrol bacterium Burkholderia cepacia AMMDR1 on two oomycete pathogens of pea (Pisum sativum L.). Appl Environ Microbiol 66: 5192-5200.
18. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide-sequences. J Mol Evol 16: 111-120.
19. Lane DJ, Pace B, Olsen GJ, Stahl DA, Sogin ML, Pace NR (1985) Rapid-determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc Natl Acad Sci USA 82: 6955-6959.
20. Ligon JM, Hill DS, Hammer PE, Torkewitz NR, Hans-Joachim DH, van Pée KH (2000) Natural products with antifungal activity from Pseudomonas biocontrol bacteria. Pest Manag Sci 56: 688-695.
21. Linker A, Evans LR, Impallomeni G (2001) The structure of a polysaccharide from infectious strains of Burkholderia cepacia. Carbohydr Res 335: 45-54.
22. Lodewyckx C, Vangronsveld J, Porteous F, Moore ERB, Taghavi S, Mezgeay M, Der Lelie D (2002) Endophytic bacteria and their potential applications. Crit Rev Plant Sci 21: 583-606.
23. Mendes R, Pizzirani-Kleiner AA, Araújo WL, Raaijmakers JM (2007) Endophytic bacteria from sugarcane: genetic and biochemical characterization of Burkholderia cepacia complex isolates. Appl Environ Microbiol 73: 7259-7267.
24. Michè L, Faure D, Blot M, Cabanne-GiuliI E, Balandreau J (2001) Detection and activity of insertion sequences in environmental strains of Burkholderia. Environ Microbiol 3: 766-773.
25. O'Sullivan DJ, O'Gara F (1992) Traits of fluorescent Pseudomonas spp. involved in suppression of plant root pathogens. Microbiol Mol Biol Rev 56: 662-676.
26. 2-fixing bacteria on micropropagated sugarcane plants. Plant Soil 242: 205-215.
27. Parret AHA, Schoofs G, Proost R, De Mot R (2003) Plant lectin-like bacteriocin from rhizosphere-colonizing Pseudomonas isolate. J Bacteriol 185: 897-908.
28. Patten CL, Glick BR (1996) Bacterial biosynthesis of indole-3-acetic acid. Can J Microbiol 42: 207-220.
29. Perin L, Martínes-Aguilar L, Paredes-Valdez G, Baldani JI, Estrada-De-Los-Santos P, Reis VM, Caballero-Mellado J (2006a) Burkholderia silvatlantica sp. nov., a diazotrophic bacterium associated with sugarcane and maize. Int J Syst Evol Microbiol 56: 1931-1937.
30. Perin L, Martínes-Aguilar L, Castro-Gonzáles R, Estrada-De-Los-Santos P, Cabellos-Avelar T, Guedes HV, Reis VM, Caballero-Mellado J (2006b) Diazotrophic Burkholderia species associated with field-grown maize and sugarcane. Appl Environ Microbiol 72: 3103-3110.
31. Pugsley AP, Oudega B (1987) Methods for studying colicins and their plasmids. In: Hardy KG (ed) Plasmids: a practical approach. IRL Press, Oxford, pp 105-161.
32. Reis VM, Estrada-De los Santos P, Tenorio-Salgado S, Vogel J, Stoffels M, Guyon S, Mavingui P, Baldani VLD, Schmid M, Baldani JI, Balandreau J, Hartmann A, Caballero-Mellado J (2004) Burkholderia tropica sp. nov., a novel nitrogenfixing, plant-associated bacterium. Int J Syst Evol Microbiol 54: 2155-2162.
33. Rodriguez H, Fraga R (1999) Phosphate solubilizing bacteria and their role in plant growth promotion. Biotechnol Adv 17: 319-339.
34. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
35. Schroth MN, Hancook GH (1995) Disease suppressive soil and root colonizing bacteria science. Soil Biol Biochem 24: 539-542.
36. Schwyn B, Neilands JB (1987) Universal chemical assay for the detection and determination of siderophores. Anal Biochem 160: 47-56.
37. Serrato RV, Sassaki GL, Cruz LM, Pedrosa FO, Gorin PAJ, Lacomini M (2006) Culture conditions for the production of an acidic exopolysaccharide by the nitrogen-fixing bacterium Burkholderia tropica. Can J Microbiol 52: 489-493.
38. Siddiqui ZA (2005) PGPR: prospective biocontrol agents of plant pathogens. In: Siddiqui ZA (ed) PGPR: biocontrol and biofertilization. Springer, The Netherlands, pp 111-142.
39. Steenhoudt O, Vanderleyden J (2000) Azospirillum, a freeliving nitrogen-fixing bacterium closely associated with grasses: genetic, biochemical and ecological aspects. FEMS Microbiol Rev 24: 487-506.
40. Tabacchioni S, Ferri L, Manno G, Mentasti M, Cocchi P, Campana S, Ravenni N, Taccetti G, Dalmastri C, Chiarini L, Bevivino A, Fani R (2008) Use of the gyrB gene to discriminate among species of the Burkholderia cepacia complex. FEMS Microbiol Lett 281: 175-182.
41. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4. 0. Mol Biol Evol 24: 596-1599.
42. Vassilev N, Vassileva M, Nikolaeva I (2006) Simultaneous P-solubilizing and biocontrol activity of microorganisms: potentials and future trends. Appl Microbiol Biotechnol 71: 137-144.
43. Verma SC, Ladha JK, Tripathi AK (2001) Evaluation of plant growth promoting and colonization ability of endophytic diazotrophs from deep water rice. J Biotechnol 91: 127-141.
44. Welbaum G, Sturz AV, Dong Z, Nowak J (2004) Fertilizing soil microorganisms to improve productivity of agroecosystems. Crit Rev Plant Sci 23: 175-193.
45. Yamamoto S, Harayama S (1995) PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putidastrains. Appl Environ Microbiol 61: 1104-1109.
46. Yamamoto S, Harayama S (1998) Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes. Int J Syst Bacteriol 48: 813-819.