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Volumn 76, Issue 18, 2010, Pages 6239-6247

Combined gel probe and isotope labeling technique for measuring dissimilatory nitrate reduction to ammonium in sediments at millimeter-level resolution

Author keywords

[No Author keywords available]

Indexed keywords

CONTROLLING FACTORS; DIFFUSIVE EQUILIBRATION; DISSIMILATORY NITRATE REDUCTION; FRESHWATER SEDIMENT; HYPOBROMITE; IN-SITU; ISOTOPE LABELING; ISOTOPIC COMPOSITION; ISOTOPIC LABELING; MARINE SEDIMENTS; NITRATE REDUCTION; PHYSICAL DISTURBANCE; QUARTZ SAND; SEDIMENT CORE; SEDIMENT PORE WATER; VERTICAL DISTRIBUTIONS; WATER COLUMNS;

EID: 77956840335     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01104-10     Document Type: Article
Times cited : (14)

References (56)
  • 2
    • 0030454286 scopus 로고    scopus 로고
    • The diffusive tortuosity of fine-grained unlithified sediments
    • Boudreau, B. P. 1996. The diffusive tortuosity of fine-grained unlithified sediments. Geochim. Cosmochim. Acta 60:31.39-31.42.
    • (1996) Geochim. Cosmochim. Acta , vol.60 , pp. 3139-3142
    • Boudreau, B.P.1
  • 3
    • 0003068174 scopus 로고
    • Gas exchange rates between air and sea
    • Broecker, W. S., and T.-H. Peng. 1974. Gas exchange rates between air and sea. Telius 26:21-35.
    • (1974) Telius , vol.26 , pp. 21-35
    • Broecker, W.S.1    Peng, T.-H.2
  • 4
    • 0030251273 scopus 로고    scopus 로고
    • Sulfide-induced dissimilatory nitrate reduction to ammonia in anaerobic freshwater sediments
    • Brunet, R. C., and L. J. Garcia-Gil. 1996. Sulfide-induced dissimilatory nitrate reduction to ammonia in anaerobic freshwater sediments. FEMS Microbiol. Ecol. 21:121-130.
    • (1996) FEMS Microbiol. Ecol. , vol.21 , pp. 121-130
    • Brunet, R.C.1    Garcia-Gil, L.J.2
  • 5
    • 33847682276 scopus 로고    scopus 로고
    • Have we overemphasized the role of denitrification in aquatic ecosystems? A review of nitrate removal pathways
    • Burgin, A. J., and S. K. Hamilton. 2007. Have we overemphasized the role of denitrification in aquatic ecosystems? A review of nitrate removal pathways. Front. Ecol. Environ. 5:89-96.
    • (2007) Front. Ecol. Environ. , vol.5 , pp. 89-96
    • Burgin, A.J.1    Hamilton, S.K.2
  • 6
    • 0141571399 scopus 로고    scopus 로고
    • Interactions between methane oxidation, and nitrification in coastal sediments
    • Carini, S. A., B. N. Orcutt, and S. B. Joye. 2003. Interactions between methane oxidation, and nitrification in coastal sediments. Geomicrobiol. J. 20:355-374.
    • (2003) Geomicrobiol. J. , vol.20 , pp. 355-374
    • Carini, S.A.1    Orcutt, B.N.2    Joye, S.B.3
  • 7
    • 0037468969 scopus 로고    scopus 로고
    • Impacts of longlme mussel, farming on oxygen and nitrogen, dynamics and biological communities of coastal, sediments
    • Christensen, P. B., R. N. Glud, T. Dalsgaard, and P. Gillespie. 2003. Impacts of longlme mussel, farming on oxygen and nitrogen, dynamics and biological communities of coastal, sediments. Aquaculture 218:567-588.
    • (2003) Aquaculture , vol.218 , pp. 567-588
    • Christensen, P.B.1    Glud, R.N.2    Dalsgaard, T.3    Gillespie, P.4
  • 8
    • 0034695993 scopus 로고    scopus 로고
    • Sediment mineralization, nutrient fluxes, denitrification and dissimilatory nitrate reduction to ammonium in an estuarine fjord with sea cage trout farms
    • Christensen, P. B., S. Rysgaard, N. P. Sloth, T. Dalsgaard, and S. Schwaerter. 2000. Sediment mineralization, nutrient fluxes, denitrification and dissimilatory nitrate reduction to ammonium in an estuarine fjord with sea cage trout farms. Aquat. Microb. Ecol. 21:73-84.
    • (2000) Aquat. Microb. Ecol. , vol.21 , pp. 73-84
    • Christensen, P.B.1    Rysgaard, S.2    Sloth, N.P.3    Dalsgaard, T.4    Schwaerter, S.5
  • 9
    • 0028123750 scopus 로고
    • In-situ speciation measurements of trace components in natural waters using thin-film. gels
    • Davison, W., and H. Zhang. 1994. In-situ speciation measurements of trace components in natural waters using thin-film. gels. Nature 367:546-548.
    • (1994) Nature , vol.367 , pp. 546-548
    • Davison, W.1    Zhang, H.2
  • 10
    • 0028065105 scopus 로고
    • Performance characteristics of gel. probes for measuring the chemistry of pore waters
    • Davison, W., H. Zhang, and G. W. Grime. .1994. Performance characteristics of gel. probes for measuring the chemistry of pore waters. Environ. Sci. Technol. 28:1623-1632.
    • (1994) Environ. Sci. Technol. , vol.28 , pp. 1623-1632
    • Davison, W.1    Zhang, H.2    Grime, G.W.3
  • 12
    • 66249110685 scopus 로고    scopus 로고
    • Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom)
    • Dong, L. F., C. J. Smith, S. Papaspyrou, A. Stott, A. M. Osborn, and D. B. Nedwell. 2009. Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Appl. Environ. Microbiol. 75:3171-3179.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 3171-3179
    • Dong, L.F.1    Smith, C.J.2    Papaspyrou, S.3    Stott, A.4    Osborn, A.M.5    Nedwell, D.B.6
  • 16
    • 76149127005 scopus 로고    scopus 로고
    • Nitrogen dynamics at the sediment-water interface in shallow, sub-tropical Florida Bay: Why denitrification efficiency may decrease with increased eutrophication
    • Gardner, W. S., and M. J. McCarthy. 2009. Nitrogen dynamics at the sediment-water interface in shallow, sub-tropical Florida Bay: why denitrification efficiency may decrease with increased eutrophication. Biogeochemistry 95: 185-198.
    • (2009) Biogeochemistry , vol.95 , pp. 185-198
    • Gardner, W.S.1    McCarthy, M.J.2
  • 17
    • 32944459274 scopus 로고    scopus 로고
    • Nitrogen, fixation and dissimilatory nitrate reduction to ammonium (DNRA) support nitrogen dynamics in Texas estuaries
    • Gardner, W. S., M. J. McCarthy, S. An, D. Sobolev, K. S. Sell, and D. Brack. 2006. Nitrogen, fixation and dissimilatory nitrate reduction to ammonium (DNRA) support nitrogen dynamics in Texas estuaries. Limnol. Oceanogr. 51:558-568.
    • (2006) Limnol. Oceanogr. , vol.51 , pp. 558-568
    • Gardner, W.S.1    McCarthy, M.J.2    An, S.3    Sobolev, D.4    Sell, K.S.5    Brack, D.6
  • 19
    • 38349190507 scopus 로고    scopus 로고
    • An Earth-system perspective of the global nitrogen cycle
    • Gruber, N., and J. N. Galloway. 2008. An Earth-system perspective of the global nitrogen cycle. Nature 451:293-296.
    • (2008) Nature , vol.451 , pp. 293-296
    • Gruber, N.1    Galloway, J.N.2
  • 21
    • 0032850103 scopus 로고    scopus 로고
    • Nitrogen cycling in coastal marine ecosystems
    • Herbert, R. A. 1999. Nitrogen cycling in coastal marine ecosystems. FEMS Microbiol. Rev. 23:563-590.
    • (1999) FEMS Microbiol. Rev. , vol.23 , pp. 563-590
    • Herbert, R.A.1
  • 23
    • 0035959656 scopus 로고    scopus 로고
    • A diagenetic model discriminating denitrification and dissimilatory nitrate reduction to ammonium in a temperate estuarine sediment
    • Kelly-Gerreyn, B. A., M. Trimmer, and D. J. Hydes. 2001. A diagenetic model discriminating denitrification and dissimilatory nitrate reduction to ammonium in a temperate estuarine sediment. Mar. Ecol. Prog. Ser. 220: 33-46.
    • (2001) Mar. Ecol. Prog. Ser. , vol.220 , pp. 33-46
    • Kelly-Gerreyn, B.A.1    Trimmer, M.2    Hydes, D.J.3
  • 24
    • 0001990469 scopus 로고
    • Re-examination of the determination of ammonium as the indophenol blue complex using salicylate
    • Kempers, A. J., and C. J. Kok. 1.989. Re-examination of the determination of ammonium as the indophenol blue complex using salicylate. Anal. Chim. Acta 221:147-155.
    • (1989) Anal. Chim. Acta , vol.221 , pp. 147-155
    • Kempers, A.J.1    Kok, C.J.2
  • 25
    • 0028575030 scopus 로고
    • High-resolution pore-water sampling with a gel sampler
    • Krom, M. D., P. Davison, H. Zhang, and W. Davison. 1994. High-resolution pore-water sampling with a gel sampler. Limnol. Oceanogr. 39:1967-1972.
    • (1994) Limnol. Oceanogr. , vol.39 , pp. 1967-1972
    • Krom, M.D.1    Davison, P.2    Zhang, H.3    Davison, W.4
  • 26
    • 27644520156 scopus 로고    scopus 로고
    • Optical microsensors for analysis of microbial communities
    • Kühl, M. 2005. Optical microsensors for analysis of microbial communities. Environ. Microbiol. 397:166-199.
    • (2005) Environ. Microbiol. , vol.397 , pp. 166-199
    • Kühl, M.1
  • 27
    • 33846120979 scopus 로고    scopus 로고
    • Vertical distribution of denitrification. in an estuarine sediment: Integrating sediment flowthrough reactor experiments and microprofiling via reactive transport modeling
    • Laverman, A. M., C. Meile, P. Van Cappellen, and E. B. A. Wieringa. 2007. Vertical distribution of denitrification. in an estuarine sediment: integrating sediment flowthrough reactor experiments and microprofiling via reactive transport modeling. Appl. Environ. Microbiol. 73:40-47.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 40-47
    • Laverman, A.M.1    Meile, C.2    Van Cappellen, P.3    Wieringa, E.B.A.4
  • 29
    • 49549157667 scopus 로고
    • Diffusion of ions in sea water and in deep-sea sediments
    • Li, Y. H., and S. Gregory. 1974. Diffusion of ions in sea water and in deep-sea sediments. Geochim. Cosmochim. Acta 38:703-71.4.
    • (1974) Geochim. Cosmochim. Acta , vol.38 , pp. 703-714
    • Li, Y.H.1    Gregory, S.2
  • 30
    • 19344365907 scopus 로고    scopus 로고
    • Effect of salinity and inorganic nitrogen concentrations on nitrification and denitrification. rates in.intertidal sediments and rocky biofilms of the Douro River estuary, Portugal
    • Magalhaes, C. M., S. B. Joye, R. M. Moreira, W. J. Wiebe, and A. A. Bordalo. 2005. Effect of salinity and inorganic nitrogen concentrations on nitrification and denitrification. rates in .intertidal sediments and rocky biofilms of the Douro River estuary, Portugal. Water Res. 39:1783-1794.
    • (2005) Water Res. , vol.39 , pp. 1783-1794
    • Magalhaes, C.M.1    Joye, S.B.2    Moreira, R.M.3    Wiebe, W.J.4    Bordalo, A.A.5
  • 32
    • 0035814256 scopus 로고    scopus 로고
    • x consumption along an estuarine salinity, nitrate, and light gradient
    • x consumption along an estuarine salinity, nitrate, and light gradient. Aquat. Microb. Ecol. 26:181-193.
    • (2001) Aquat. Microb. Ecol. , vol.26 , pp. 181-193
    • Meyer, R.L.1    Kjaer, T.2    Revsbech, N.P.3
  • 33
    • 4344629438 scopus 로고    scopus 로고
    • Detection and widespread distribution of the ntfA gene encoding nitrite reduction to ammonia, a short circuit in the biological nitrogen cycle that competes with denitrification
    • Mohan, S. B., M. Schmid, M. Jetten, and J. Cole. 2004. Detection and widespread distribution of the ntfA gene encoding nitrite reduction to ammonia, a short circuit in. the biological nitrogen cycle that competes with denitrification. FEMS Microbiol. Ecol. 49:433-443.
    • (2004) FEMS Microbiol. Ecol. , vol.49 , pp. 433-443
    • Mohan, S.B.1    Schmid, M.2    Jetten, M.3    Cole, J.4
  • 34
    • 0032426496 scopus 로고    scopus 로고
    • Use of gel probes for the determination of high resolution solute distributions in marine and estuarine pore waters
    • Mortimer, R. J. G., M. D. Krom, P. O. J. Hall, S. Hulth, and S. Stahl. 1998. Use of gel probes for the determination of high resolution solute distributions in marine and estuarine pore waters. Mar. Chem. 63:119-129.
    • (1998) Mar. Chem. , vol.63 , pp. 119-129
    • Mortimer, R.J.G.1    Krom, M.D.2    Hall, P.O.J.3    Hulth, S.4    Stahl, S.5
  • 35
    • 0026614897 scopus 로고
    • Denitrification in sediment determined from nitrogen isotope pairing
    • Nielsen, L. P. 1992. Denitrification in sediment determined from nitrogen isotope pairing. FEMS Microbiol. Ecol. 86:357-362.
    • (1992) FEMS Microbiol. Ecol. , vol.86 , pp. 357-362
    • Nielsen, L.P.1
  • 36
    • 33746101879 scopus 로고    scopus 로고
    • Impact of clam and mussel farming on benthic metabolism and nitrogen cycling, with emphasis on nitrate reduction pathways
    • Nizzoli, D., D. T. Welsh, E. A. Fano, and P. Viaroli. 2006. Impact of clam and mussel farming on benthic metabolism and nitrogen cycling, with emphasis on nitrate reduction pathways. Mar. Ecol. Prog. Sci. 315:151-165.
    • (2006) Mar. Ecol. Prog. Sci. , vol.315 , pp. 151-165
    • Nizzoli, D.1    Welsh, D.T.2    Fano, E.A.3    Viaroli, P.4
  • 37
    • 52949118854 scopus 로고    scopus 로고
    • Nutrient-replete benthic microalgae as a source of dissolved organic carbon to coastal waters
    • Porubsky, W. P., L. E. Velasquez, and S. B. Joye. 2008. Nutrient-replete benthic microalgae as a source of dissolved organic carbon to coastal waters. Estuar. Coast. 31:860-876.
    • (2008) Estuar. Coast. , vol.31 , pp. 860-876
    • Porubsky, W.P.1    Velasquez, L.E.2    Joye, S.B.3
  • 38
    • 67649574734 scopus 로고    scopus 로고
    • Benthic metabolism and the fate of dissolved inorganic nitrogen in intertidal, sediments
    • Porubsky, W. P., N. B. Weston, and S. B. Joye. 2009. Benthic metabolism and the fate of dissolved inorganic nitrogen in intertidal, sediments. Estuar. Coast. Shelf Sci. 83:392-102.
    • (2009) Estuar. Coast. Shelf Sci. , vol.83 , pp. 392-1102
    • Porubsky, W.P.1    Weston, N.B.2    Joye, S.B.3
  • 39
    • 34547757840 scopus 로고    scopus 로고
    • Biological and chemical sulfide oxidation in a Beggiatoa inhabited marine sediment
    • Preisler, A., D. De Beer, A. Lichtschlag, G. Lavik, A. Boetius, and B. B. Jørgensen. 2007. Biological and chemical sulfide oxidation in. a Beggiatoa inhabited marine sediment. ISME J. 1:341-353.
    • (2007) ISME J. , vol.1 , pp. 341-353
    • Preisler, A.1    De Beer, D.2    Lichtschlag, A.3    Lavik, G.4    Boetius, A.5    Jørgensen, B.B.6
  • 40
    • 0030201244 scopus 로고    scopus 로고
    • A benthic gradient chamber for culturing phototrophic sulfur bacteria on reconstituted sediments
    • Pringault, O., R. de Wit, and P. Caumette. 1.996. A benthic gradient chamber for culturing phototrophic sulfur bacteria on reconstituted sediments. FEMS Microbiol. Ecol. 20:237-250.
    • (1996) FEMS Microbiol. Ecol. , vol.20 , pp. 237-250
    • Pringault, O.1    De Wit, R.2    Caumette, P.3
  • 41
    • 84986767568 scopus 로고
    • An oxygen microsensor with a guard cathode
    • Revsbech, N. P. 1989. An oxygen microsensor with a guard cathode. Limnol. Oceanogr. 34:474-478.
    • (1989) Limnol. Oceanogr. , vol.34 , pp. 474-478
    • Revsbech, N.P.1
  • 42
    • 27644492918 scopus 로고    scopus 로고
    • Analysis of microbial communities with electrochemical microsensors and microscale biosensors
    • Revsbech, N. P. 2005. Analysis of microbial communities with electrochemical microsensors and microscale biosensors. Methods Enzymol. 397:1.47166.
    • (2005) Methods Enzymol. , vol.397 , pp. 147-166
    • Revsbech, N.P.1
  • 48
    • 38349022151 scopus 로고    scopus 로고
    • Denitrification, dissimilatory nitrate reduction to ammonium, and nitrogen fixation along a nitrate concentration gradient in a created freshwater wetland
    • Scott, J. T., M. J. McCarthy, W. S. Gardner, and R. D. Doyle. 2008. Denitrification, dissimilatory nitrate reduction to ammonium, and nitrogen fixation along a nitrate concentration gradient in a created freshwater wetland. Biogeochemistry 87:99-111.
    • (2008) Biogeochemistry , vol.87 , pp. 99-111
    • Scott, J.T.1    McCarthy, M.J.2    Gardner, W.S.3    Doyle, R.D.4
  • 49
    • 0027332137 scopus 로고
    • Denitrification measurements in aquatic sediments: A comparison of three methods
    • Seitzinger, S. P., L. P. Nielsen, J. Callrey, and P. B. Christensen. 1993. Denitrification measurements in aquatic sediments: a comparison of three methods. Biogeochemistry 23:147-167.
    • (1993) Biogeochemistry , vol.23 , pp. 147-167
    • Seitzinger, S.P.1    Nielsen, L.P.2    Callrey, J.3    Christensen, P.B.4
  • 50
    • 0027061750 scopus 로고
    • Nitrification in sediment cores measured with acetylene inhibition
    • Sloth, N. P., L. P. Nielsen, and T. H. Blackburn. 1992. Nitrification in sediment cores measured with acetylene inhibition. Limnol. Oceanogr. 37: 1108-11.12.
    • (1992) Limnol. Oceanogr. , vol.37 , pp. 1108-1112
    • Sloth, N.P.1    Nielsen, L.P.2    Blackburn, T.H.3
  • 51
    • 0001040750 scopus 로고
    • Denitrification rates in a marine sediment as measured by the acetylene inhibition technique
    • Sorensen, J. 1978. Denitrification rates in a marine sediment as measured by the acetylene inhibition technique. Appl. Environ. Microbiol. 36:139-143.
    • (1978) Appl. Environ. Microbiol. , vol.36 , pp. 139-143
    • Sorensen, J.1
  • 52
    • 0037087929 scopus 로고    scopus 로고
    • Bioturbation effects of Chironomus riparius on the benthic N-cycle as measured using microsensors and microbiological assays
    • Stief, P., and D. De Beer. 2002. Bioturbation effects of Chironomus riparius on the benthic N-cycle as measured using microsensors and microbiological assays. Aquat. Microb. Ecol. 27:175-185.
    • (2002) Aquat. Microb. Ecol. , vol.27 , pp. 175-185
    • Stief, P.1    De Beer, D.2
  • 53
    • 33845432901 scopus 로고    scopus 로고
    • Probing the microenvironment of freshwater sediment macrofauna: Implications of deposit-feeding and bioirrigation for nitrogen cycling
    • Stief, P., and D. De Beer. 2006. Probing the microenvironment of freshwater sediment macrofauna: implications of deposit-feeding and bioirrigation for nitrogen cycling. Limnol. Oceanogr. 51:2538-2548.
    • (2006) Limnol. Oceanogr. , vol.51 , pp. 2538-2548
    • Stief, P.1    De Beer, D.2
  • 54
    • 58149483481 scopus 로고    scopus 로고
    • Micro-scale biogeochemical heterogeneity in sediments: A review of available technology and observed evidence
    • Stockdale, A., W. Davison, and H. Zhang. 2009. Micro-scale biogeochemical heterogeneity in sediments: a review of available technology and observed evidence. Earth-Sci. Rev. 92:81-97.
    • (2009) Earth-Sci. Rev. , vol.92 , pp. 81-97
    • Stockdale, A.1    Davison, W.2    Zhang, H.3
  • 56
    • 0002761996 scopus 로고
    • Nitrogen, fixation in soil and plant systems
    • In R. Knowles and T. H. Blackburn (ed.), Academic Press, New York, NY.
    • Warembourg, F. R. 1993. Nitrogen, fixation in soil and plant systems, p. 157-180. In R. Knowles and T. H. Blackburn (ed.), Nitrogen isotope techniques. Academic Press, New York, NY.
    • (1993) Nitrogen Isotope Techniques. , pp. 157-180
    • Warembourg, F.R.1


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