Genetic characterization of slow bee paralysis virus of the honeybee (Apis mellifera L.)

Journal of General Virology

Volumn 91, Issue 10, 2010, Pages 2524-2530

  De Miranda, Joachim R ^a,b   Dainat, Benjamin ^c,d,e   Locke, Barbara ^b   Cordoni, Guido ^f,g   Berthoud, Helène ^c   Gauthier, Laurent ^c,d   Neumann, Peter ^c,h   Budge, Giles E ^g   Ball, Brenda V ⁱ   Stoltz, Don B ^j  

^a QUEEN'S UNIVERSITY BELFAST   (United Kingdom)

^b SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^c AGROSCOPE LIEBEFELD POSIEUX RESEARCH STATION ALP   (Switzerland)

^d MONTPELLIER SUPAGRO   (France)

^e UNIV MONTPELLIER   (France)

^f UNIVERSITY OF SURREY   (United Kingdom)

^g FOOD AND ENVIRONMENT RESEARCH AGENCY   (United Kingdom)

^h RHODES UNIVERSITY   (South Africa)

ⁱ ROTHAMSTED RESEARCH   (United Kingdom)

^j DALHOUSIE UNIVERSITY   (Canada)

more..

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; NUCLEOTIDE; VIRUS RNA; 3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; MESSENGER RNA;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ARTICLE; GENETIC VARIABILITY; GENOME ANALYSIS; HONEYBEE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA VIRUS; SLOW BEE PARALYSIS VIRUS; SWITZERLAND; UNITED KINGDOM; VIRUS GENOME; VIRUS STRAIN; ANIMAL; BEE; CLUSTER ANALYSIS; DNA SEQUENCE; EUROPE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; OPEN READING FRAME; PHYLOGENY; SEQUENCE HOMOLOGY; VIROLOGY;

APIS MELLIFERA; APOIDEA; VARROA;

3' UNTRANSLATED REGIONS; 5' UNTRANSLATED REGIONS; ANIMALS; BEES; CLUSTER ANALYSIS; EUROPE; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYLOGENY; RNA VIRUSES; RNA, MESSENGER; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 77956825607     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.022434-0     Document Type: Article

References (47)

1. Allen, M. F. & Ball, B. V. (1996). The incidence and world distribution of honey bee viruses. Bee World 77, 141-162.
2. Anderson, D. L. (1990). Pests and pathogens of the honeybee (Apis mellifera L.) in Fiji. J Apic Res 29, 53-59.
3. Bailey, L. & Ball, B. V. (1991). Honey Bee Pathology, 2nd edn. London: Academic Press.
4. Bailey, L. & Woods, R. D. (1974). Three previously undescribed viruses from the honey bee. J Gen Virol 25, 175-186.
5. Belsham, G. J. (2009). Divergent picornavirus IRES elements. Virus Res 139, 183-192.
6. Bustin, S. A., Benes, V., Garson, J. A., Hellemans, J., Huggett, J., Kubista, M., Mueller, R., Nolan, T., Pfaffl, M. W. & other authors (2009). The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem 55, 611-622.
7. Carreck, N. L., Ball, B. V. & Martin, S. J. (2010). Honey bee colony collapse and changes in viral prevalence associated with Varroa destructor. J Apic Res 49, 93-94.
8. Chantawannakul, P., Ward, L., Boonham, N. & Brown, M. (2006). A scientific note on the detection of honeybee viruses using real-time PCR (TaqMan) in Varroa mites collected from a Thai honeybee (Apis mellifera) apiary. J Invertebr Pathol 91, 69-73.
9. de Miranda, J. R. & Genersch, E. (2010). Deformed wing virus. J Invertebr Pathol 103, S48-S61.
10. de Miranda, J. R., Cordoni, G. & Budge, G. (2010). The acute bee paralysis virus-Kashmir bee virus-Israeli acute paralysis virus complex. J Invertebr Pathol 103 (Suppl. 1), S30-S47.
11. Denholm, C. H. (1999). Inducible honey bee viruses associated with Varroa jacobsoni. PhD thesis, Keele University, Keele, UK.
12. Glaser, W., Cencic, R. & Skern, T. (2001). Foot-and-mouth disease virus leader proteinase: involvement of C-terminal residues in self-processing and cleavage of eIF4GI. J Biol Chem 276, 35473-35481.
13. Gorbalenya, A. E., Donchenko, A. P., Blinov, V. M. & Koonin, E. V. (1989). Cysteine proteases of positive strand RNA viruses and chymotrypsin-like serine proteases: a distinct protein superfamily with a common structural fold. FEBS Lett 243, 103-114.
14. Gorbalenya, A. E., Pringle, F. M., Zeddam, J. L., Luke, B. T., Cameron, C. E., Kalmakoff, J., Hanzlik, T. N., Gordon, K. H. & Ward, V. K. (2002). The palm subdomain-based active site is internally permuted in viral RNA-dependent RNA polymerases of an ancient lineage. J Mol Biol 324, 47-62.
15. Guarné, A., Tormo, J., Kirchweger, R., Pfistermueller, D., Fita, I. & Skern, T. (1998). Structure of the foot-and-mouth disease virus leader protease: a papain-like fold adapted for self-processing and eIF4G recognition. EMBO J 17, 7469-7479.
16. Harlow, E. & Lane, D. P. (1988). Antibodies: a Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
17. Hébrard, E., Bessin, Y., Michon, T., Longhi, S., Uversky, V. N., Delalande, F., Van Dorsselaer, A., Romero, P., Walter, J. & other authors (2009). Intrinsic disorder in viral proteins genome-linked: experimental and predictive analyses. Virol J 16, e23.
18. Hinton, T. M., Ross-Smith, N., Warner, S., Belsham, G. J. & Crabb, B. S. (2002). Conservation of L and 3C protease activities across distantly related aphthoviruses. J Gen Virol 83, 3111-3121.
19. Hornitzky, M. A. Z. (1987). Prevalence of virus infections of honey bees in Eastern Australia. J Apic Res 26, 181-187.
20. Jan, E. (2006). Divergent IRES elements in invertebrates. Virus Res 119, 16-28.
21. Koonin, E. V., Senkevich, T. G. & Dolja, V. V. (2006). The ancient virus world and evolution of cells. Biol Direct 1, 29.
22. Koonin, E. V., Wolf, Y. I., Nagasaki, K. & Dolja, V. V. (2008). The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups. Nat Rev Microbiol 6, 925-939.
23. Lanzi, G., de Miranda, J. R., Boniotti, M. B., Cameron, C. E., Lavazza, A., Capucci, L., Camazine, S. M. & Rossi, C. (2006). Molecular and biological characterization of deformed wing virus of honeybees (Apis mellifera). J Virol 80, 4998-5009.
24. Martin, S. J., Hogarth, A., van Breda, J. & Perrett, J. (1998). A scientific note on Varroa jacobsoni Oudemans and the collapse of Apis mellifera colonies in the United Kingdom. Apidologie (Celle) 29, 369-370.
25. Moretti, S., Armougom, F., Wallace, I. M., Higgins, D. G., Jongeneel, C. V. & Notredame, C. (2007). The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. Nucleic Acids Res 35, W645-W648.
26. Nakashima, N. & Uchiumi, T. (2009). Functional analysis of structural motifs in dicistroviruses. Virus Res 139, 137-147.
27. Ng, K. K. S., Arnold, J. J. & Cameron, C. E. (2008). Structure-function relationships among RNA-dependent RNA polymerases. Curr Top Microbiol Immunol 320, 137-156.
28. Nordström, S., Fries, I., Aarhus, A., Hansen, H. & Korpela, S. (1999). Virus infections in nordic honey bee colonies with no, low or severe Varroa jacobsoni infections. Apidologie (Celle) 30, 475-484.
29. Ongus, J. R., Peters, D., Bonmatin, J.-M., Bengsch, E., Vlak, J. M. & van Oers, M. M. (2004). Complete sequence of a picorna-like virus of the genus Iflavirus replicating in the mite Varroa destructor. J Gen Virol 85, 3747-3755.
30. Ongus, J. R., Roode, E. C., Pleij, C. W. A., Vlak, J. M. & van Oers, M. M. (2006). The 5′ nontranslated region of Varroa destructor virus 1 (genus Iflavirus): structure prediction and IRES activity in Lymantria dispar cells. J Gen Virol 87, 3397-3407.
31. Palmenberg, A. C. (1990). Proteolytic processing of picornaviral polyprotein. Annu Rev Microbiol 44, 603-623.
32. Pearl, F. M., Bennet, C. F., Bray, C. E., Harrison, A. P., Martin, N., Shepherd, A., Sillitoe, I., Thornton, J. & Orengo, C. A. (2003). The CATH database: an extended protein family resource for structural and functional genomics. Nucleic Acids Res 31, 452-455.
33. Quevillon, E., Silventoinen, V., Pillai, S., Harte, N., Mulder, N., Apweiler, R. & Lopez, R. (2005). InterProScan: protein domains identifier. Nucleic Acids Res 33, W116-W120.
34. Ribière, M., Ball, B. V. & Aubert, M. (2008). Natural history and geographic distribution of honey bee viruses. In Virology and the Honey Bee, pp. 15-84. Edited by M. Aubert, B. Ball, I. Fries, R. Moritz, N. Milani & I. Bernardinelli. Luxembourg: European Communities Press.
35. Roberts, L. O. & Groppelli, E. (2009). An atypical IRES within the 5′ UTR of a dicistrovirus genome. Virus Res 139, 157-165.
36. Roossinck, M. J. (1997). Mechanisms of plant virus evolution. Annu Rev Phytopathol 35, 191-209.
37. Roossinck, M. J. (2002). Evolutionary history of Cucumber mosaic virus deduced by phylogenetic analyses. J Virol 76, 3382-3387.
38. Ryan, M. D. & Flint, M. (1997). Virus-encoded proteases of the picornavirus super-group. J Gen Virol 78, 699-723.
39. Salonen, A., Ahola, T. & Kaariainen, L. (2005). Viral RNA replication in association with cellular membranes. Curr Top Microbiol Immunol 285, 139-173.
40. Santillán-Galicia, M. T., Ball, B. V., Clark, S. J. & Alderson, P. G. (2010). Transmission of deformed wing virus and slow paralysis virus to adult bees (Apis mellifera L.) by Varroa destructor. J Apic Res 49, 141-148.
41. Steil, B. P. & Barton, D. J. (2009). Cis-active RNA elements (CREs) and picornavirus RNA replication. Virus Res 139, 240-255.
42. Stoltz, D., Shen, X.-R., Boggis, C. & Sisson, G. (1995). Molecular diagnosis of Kashmir bee virus infection. J Apic Res 34, 153-160.
43. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
44. Tentcheva, D., Gauthier, L., Zappulla, N., Dainat, B., Cousserans, F., Colin, M. E. & Bergoin, M. (2004). Prevalence and seasonal variations of six bee virus in Apis mellifera L. and Varroa destructor mite populations in France. Appl Environ Microbiol 70, 7185-7191.
45. Todd, J. H., de Miranda, J. R. & Ball, B. V. (2007). Incidence and molecular characterization of viruses found in dying New Zealand honey bee (Apis mellifera) colonies infested with Varroa destructor. Apidologie (Celle) 38, 354-367.
46. Topolska, G., Ball, B. V. & Allen, M. F. (1995). Identification of viruses in bees from two Warsaw apiaries. Med Weter 51, 145-147.
47. Wallace, I. M., O'Sullivan, O., Higgins, D. G. & Notredame, C. (2006). M-Coffee: combining multiple sequence alignment methods with T-Coffee. Nucleic Acids Res 34, 1692-1699.