메뉴 건너뛰기




Volumn 2, Issue 1, 2010, Pages 3-11

Study of the docking of competitive inhibitors at a model of tyrosinase active site: Insights from joint broken-symmetry/spin-flip DFT computations and ELF topological analysis

Author keywords

competitive inhibition; copper; Density Functional Theory; oxygenase; Spin Flip TD DFT; tyrosinase

Indexed keywords

COPPER; IMIDAZOLE; IMIDAZOLE DERIVATIVE; MONOPHENOL MONOOXYGENASE;

EID: 77956628434     PISSN: 19132751     EISSN: 18671462     Source Type: Journal    
DOI: 10.1007/s12539-010-0096-8     Document Type: Article
Times cited : (9)

References (52)
  • 1
    • 36549091903 scopus 로고
    • Correlation energy of an inhomogeneous electron gas: A coordinate-space model
    • Becke, A. D. 1988. Correlation energy of an inhomogeneous electron gas: A coordinate-space model. J Chem Phys 88, 1053-1062.
    • (1988) J Chem Phys , vol.88 , pp. 1053-1062
    • Becke, A.D.1
  • 2
    • 36549100412 scopus 로고
    • A simple measure of electron localization in atomic and molecular systems
    • Becke, A. D., Edgecombe, K. E. 1990. A simple measure of electron localization in atomic and molecular systems. J Chem Phys 92, 5397-5403.
    • (1990) J Chem Phys , vol.92 , pp. 5397-5403
    • Becke, A.D.1    Edgecombe, K.E.2
  • 3
  • 4
    • 0028176278 scopus 로고
    • Inhibitor binding to the binuclear active site of tyrosinase: Temperature, pH, and solvent deuterium isotope effects
    • Conrad, J. S., Dawso, S. R., Hubbard, E. R., Meyers, T. E., Strothkamp, K. G. 1994. Inhibitor binding to the binuclear active site of tyrosinase: Temperature, pH, and solvent deuterium isotope effects. Biochem 33, 5739-5744.
    • (1994) Biochem , vol.33 , pp. 5739-5744
    • Conrad, J.S.1    Dawso, S.R.2    Hubbard, E.R.3    Meyers, T.E.4    Strothkamp, K.G.5
  • 7
    • 0034255667 scopus 로고    scopus 로고
    • Tyrosinase/catecholoxidase activity of hemocyanins: structural basis and molecular mechanism
    • Decker, H., Tuczek, F. 2000. Tyrosinase/catecholoxidase activity of hemocyanins: structural basis and molecular mechanism. Trends in Biochemical Sciences 25, 392-397.
    • (2000) Trends in Biochemical Sciences , vol.25 , pp. 392-397
    • Decker, H.1    Tuczek, F.2
  • 8
    • 47549087552 scopus 로고    scopus 로고
    • How to optimize a C-H cleavage with a mononuclear copper-dioxygen adduct?
    • de la Lande, A., Gérard, H., Parisel, O. 2008a. How to optimize a C-H cleavage with a mononuclear copper-dioxygen adduct? Int J Quant Chem 108 1898-1904.
    • (2008) Int J Quant Chem , vol.108 , pp. 1898-1904
    • de la Lande, A.1    Gérard, H.2    Parisel, O.3
  • 9
    • 33846461660 scopus 로고    scopus 로고
    • Singlet-triplet gaps in large multireference systems: Spin-flip-driven alternatives for bioinorganic modeling
    • de la Lande, A., Moliner, V., Parisel, O. 2007. Singlet-triplet gaps in large multireference systems: Spin-flip-driven alternatives for bioinorganic modeling. J Chem Phys 126, 035102.
    • (2007) J Chem Phys , vol.126 , pp. 035102
    • de la Lande, A.1    Moliner, V.2    Parisel, O.3
  • 10
    • 53849084796 scopus 로고    scopus 로고
    • + adduct relevant to copper monoxygenase enzymes: insights into the competitive dehydrogenation vs. hydroxylation reactive pathways
    • + adduct relevant to copper monoxygenase enzymes: insights into the competitive dehydrogenation vs. hydroxylation reactive pathways. Chem Eur J 14, 6465-6473.
    • (2008) Chem Eur J , vol.14 , pp. 6465-6473
    • de la Lande, A.1    Parisel, O.2    Gérard, H.3    Moliner, V.4    Reinaud, O.5
  • 11
    • 68149120562 scopus 로고    scopus 로고
    • Dioxygen activation by mononuclear copper enzymes: Insights from a tripodal ligand mimicking their CuM coordination sphere
    • de la Lande, A., Salahub, D., Moliner, V., Gérard, H., Piquemal, J.-P., Parisel, O. 2009. Dioxygen activation by mononuclear copper enzymes: Insights from a tripodal ligand mimicking their CuM coordination sphere. Inorg Chem 48, 7003-7005.
    • (2009) Inorg Chem , vol.48 , pp. 7003-7005
    • de la Lande, A.1    Salahub, D.2    Moliner, V.3    Gérard, H.4    Piquemal, J.-P.5    Parisel, O.6
  • 14
    • 2842525944 scopus 로고    scopus 로고
    • Food browning and its prevention: An overview
    • Friedman, M. 1996. Food browning and its prevention: An overview. J Agric Food Chem 44, 31-653.
    • (1996) J Agric Food Chem , vol.44 , pp. 31-653
    • Friedman, M.1
  • 16
    • 0025808737 scopus 로고
    • A tyrosinase gene missense mutation in temperature-sensitive type I oculocutaneous albinism. A human homologue to the Siamese cat and the Himalayan mouse
    • Giebel, L. B. Tripathi, King, R. A., Spritz, R. A. 1991. A tyrosinase gene missense mutation in temperature-sensitive type I oculocutaneous albinism. A human homologue to the Siamese cat and the Himalayan mouse. J Clin Invest 87, 1119-1122.
    • (1991) J Clin Invest , vol.87 , pp. 1119-1122
    • Giebel, L.B.1    Tripathi2    King, R.A.3    Spritz, R.A.4
  • 17
    • 36649010414 scopus 로고    scopus 로고
    • Anisotropic, polarizable molecular mechanics studies of inter-, intra-molecular interactions, and ligand-macromolecule complexes. A bottom-up strategy
    • Gresh, N., Cisneros, G. A., Darden, T. A., Piquemal, J.-P. 2007. Anisotropic, polarizable molecular mechanics studies of inter-, intra-molecular interactions, and ligand-macromolecule complexes. A bottom-up strategy. J Chem Theory Comput 3, 1960-1986.
    • (2007) J Chem Theory Comput , vol.3 , pp. 1960-1986
    • Gresh, N.1    Cisneros, G.A.2    Darden, T.A.3    Piquemal, J.-P.4
  • 18
    • 84883308811 scopus 로고    scopus 로고
    • Jaguar 4. 1, Portland OR, USA
    • Jaguar 4. 1 2000. Schrodinger Inc., Portland OR, USA.
    • (2000) Schrodinger Inc
  • 20
    • 0001476130 scopus 로고    scopus 로고
    • Copper-dioxygen complexes: functional models for proteins
    • Karlin, K. D., Lee, D-H., Obias, H. V., Humphreys, K. J. 1998. Copper-dioxygen complexes: functional models for proteins. Pure Appl Chem 70, 855-862.
    • (1998) Pure Appl Chem , vol.70 , pp. 855-862
    • Karlin, K.D.1    Lee, D.-H.2    Obias, H.V.3    Humphreys, K.J.4
  • 21
    • 23844545621 scopus 로고    scopus 로고
    • Tyrosinase inhibitors from natural and synthetic sources: structure, inhibition mechanism and perspective for the future
    • Kim, Y-J., Uyama, H. 2005. Tyrosinase inhibitors from natural and synthetic sources: structure, inhibition mechanism and perspective for the future. CMLS 62, 1707-1723.
    • (2005) Cmls , vol.62 , pp. 1707-1723
    • Kim, Y.-J.1    Uyama, H.2
  • 22
    • 0001084385 scopus 로고
    • Copper-dioxygen complexes. Inorganic and bioinorganic perspectives
    • Kitajima, N., Morooka, Y. 1994. Copper-dioxygen complexes. Inorganic and bioinorganic perspectives. Chem Rev 94, 737-757.
    • (1994) Chem Rev , vol.94 , pp. 737-757
    • Kitajima, N.1    Morooka, Y.2
  • 23
    • 26844534384 scopus 로고
    • Self-consistent molecular orbital methods. A basis set for correlated wave functions
    • Krishnan, R., Binkley, J. S., Seeger, R., Pople, J. A. 1980. Self-consistent molecular orbital methods. A basis set for correlated wave functions. J Chem Phys 72, 650-654.
    • (1980) J Chem Phys , vol.72 , pp. 650-654
    • Krishnan, R.1    Binkley, J.S.2    Seeger, R.3    Pople, J.A.4
  • 24
    • 0345491105 scopus 로고
    • Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density
    • Lee, C., Yang, W., Parr, R. G. 1988. Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Phys Rev B 37, 785-789.
    • (1988) Phys Rev B , vol.37 , pp. 785-789
    • Lee, C.1    Yang, W.2    Parr, R.G.3
  • 25
    • 0000571982 scopus 로고
    • Molecular and active site structure of tyrosinase
    • Lerch, K. 1987. Molecular and active site structure of tyrosinase. Life Chem Rep 5, 221-234.
    • (1987) Life Chem Rep , vol.5 , pp. 221-234
    • Lerch, K.1
  • 26
    • 0000093330 scopus 로고    scopus 로고
    • A quantum chemical study of the mechanism of tyrosinase
    • Lind, T., Siegbahn, P. E. M., Crabtree, R. H. 1999. A quantum chemical study of the mechanism of tyrosinase. J Phys Chem B 103, 1193-1202.
    • (1999) J Phys Chem B , vol.103 , pp. 1193-1202
    • Lind, T.1    Siegbahn, P.E.M.2    Crabtree, R.H.3
  • 27
    • 0024288948 scopus 로고
    • Inhibition of mushroom tyrosinase by 3-amino-L-tyrosine: molecular probing of the active site of the enzyme
    • Maddaluno, J., Faull, K. F. 1988. Inhibition of mushroom tyrosinase by 3-amino-L-tyrosine: molecular probing of the active site of the enzyme. Experientia 44, 885-887.
    • (1988) Experientia , vol.44 , pp. 885-887
    • Maddaluno, J.1    Faull, K.F.2
  • 28
    • 0001185061 scopus 로고
    • In vitro effectiveness of several whitening cosmetic components in human melanocytes
    • Maeda, K., Fukuda, M. 1991. In vitro effectiveness of several whitening cosmetic components in human melanocytes. J Soc Cosmet Chem 42, 361-368.
    • (1991) J Soc Cosmet Chem , vol.42 , pp. 361-368
    • Maeda, K.1    Fukuda, M.2
  • 29
    • 33646827679 scopus 로고    scopus 로고
    • Crystallographic evidence that the dinuclear copper center of tyrosinase is flexible during catalysis
    • Matoba, Y., Kumagai, T., Yamamoto, A., Yoshitsu, H., Sugiyama, M. 2006. Crystallographic evidence that the dinuclear copper center of tyrosinase is flexible during catalysis. J Biol Chem 281, 8981-8990.
    • (2006) J Biol Chem , vol.281 , pp. 8981-8990
    • Matoba, Y.1    Kumagai, T.2    Yamamoto, A.3    Yoshitsu, H.4    Sugiyama, M.5
  • 30
    • 0141509423 scopus 로고
    • Contracted Gaussian basis sets for molecular calculations. I. Second row atoms, Z=11-18
    • McLean, A. D., Chandler, G. S. 1980. Contracted Gaussian basis sets for molecular calculations. I. Second row atoms, Z=11-18. J Chem Phys 72, 5639-5648.
    • (1980) J Chem Phys , vol.72 , pp. 5639-5648
    • McLean, A.D.1    Chandler, G.S.2
  • 32
    • 0035847493 scopus 로고    scopus 로고
    • Dicopper(I) complexes of unsymmetrical binucleating ligands and their dioxygen reactivities
    • Murthy, N. N., Mahroof-Tahir, M., Karlin, K. D. 2001. Dicopper(I) complexes of unsymmetrical binucleating ligands and their dioxygen reactivities. Inorg Chem 40, 628-635.
    • (2001) Inorg Chem , vol.40 , pp. 628-635
    • Murthy, N.N.1    Mahroof-Tahir, M.2    Karlin, K.D.3
  • 33
    • 60649102619 scopus 로고    scopus 로고
    • Prediction of molecular spectra and molecular properties with Density Functional Theory: From fundamental theory to exchange coupling
    • Neese, F. 2009. Prediction of molecular spectra and molecular properties with Density Functional Theory: From fundamental theory to exchange coupling. Coord Chem Rev 253, 526-563.
    • (2009) Coord Chem Rev , vol.253 , pp. 526-563
    • Neese, F.1
  • 34
    • 0000393496 scopus 로고    scopus 로고
    • Computational tools for the electron localization function topological analysis
    • Noury, S., Krokidis, X., Fuster, F., Silvi, B. 1999. Computational tools for the electron localization function topological analysis. Comput Chem 23, 597-604.
    • (1999) Comput Chem , vol.23 , pp. 597-604
    • Noury, S.1    Krokidis, X.2    Fuster, F.3    Silvi, B.4
  • 35
    • 29844438770 scopus 로고    scopus 로고
    • Hydroxylation of phenolic compounds by a peroxodicopper(II) complex: Further insight into the mechanism of tyrosinase
    • Palavicini, S., Granata, A., Monzani, E., Casella, L. 2005. Hydroxylation of phenolic compounds by a peroxodicopper(II) complex: Further insight into the mechanism of tyrosinase. J Am Chem Soc 127, 18031-18036.
    • (2005) J Am Chem Soc , vol.127 , pp. 18031-18036
    • Palavicini, S.1    Granata, A.2    Monzani, E.3    Casella, L.4
  • 36
    • 44449112766 scopus 로고    scopus 로고
    • Advancing beyond charge analysis using the Electronic Localization Function: Chemically intuitive distribution of electrostatic moments
    • Pilmé, J., Piquemal, J.-P. 2008. Advancing beyond charge analysis using the Electronic Localization Function: Chemically intuitive distribution of electrostatic moments. J Comput Chem 29, 1440-1449.
    • (2008) J Comput Chem , vol.29 , pp. 1440-1449
    • Pilmé, J.1    Piquemal, J.-P.2
  • 37
    • 0038121442 scopus 로고    scopus 로고
    • Theoretical study of phenol and 2-aminophenol docking at a model of tyrosinase active site
    • Piquemal, J.-P, Maddaluno, J., Silvi B, Giessner-Prettre, C. 2003. Theoretical study of phenol and 2-aminophenol docking at a model of tyrosinase active site. New J Chem 27, 909-913.
    • (2003) New J Chem , vol.27 , pp. 909-913
    • Piquemal, J.-P.1    Maddaluno, J.2    Silvi, B.3    Giessner-Prettre, C.4
  • 39
    • 33745288530 scopus 로고    scopus 로고
    • Comments on the nature of the bonding in oxygenated dinuclear copper enzymes models
    • Piquemal, J.-P., Pilmé, J. 2006. Comments on the nature of the bonding in oxygenated dinuclear copper enzymes models. J Mol Struct: THEOCHEM 764, 77-86.
    • (2006) J Mol Struct: THEOCHEM , vol.764 , pp. 77-86
    • Piquemal, J.-P.1    Pilmé, J.2
  • 41
    • 0026550080 scopus 로고
    • Effects of tyrosinase activity on the cytotoxicity of 4-S-cysteaminylphenol and N-acetyl-4-S-cysteaminylphenol in melanoma cells
    • Prezioso, J. A., Epperly, M. W., Wang, N., Bloomer, W. D. 1992. Effects of tyrosinase activity on the cytotoxicity of 4-S-cysteaminylphenol and N-acetyl-4-S-cysteaminylphenol in melanoma cells. Cancer Lett 63, 73-79.
    • (1992) Cancer Lett , vol.63 , pp. 73-79
    • Prezioso, J.A.1    Epperly, M.W.2    Wang, N.3    Bloomer, W.D.4
  • 44
    • 7744243956 scopus 로고
    • An electronic structural comparison of copper-peroxide complexes of relevance to hemocyanin and tyrosinase active sites
    • Ross, P. K., Solomon, E. I. 1991. An electronic structural comparison of copper-peroxide complexes of relevance to hemocyanin and tyrosinase active sites. J Am Chem Soc 113, 3246-3259.
    • (1991) J Am Chem Soc , vol.113 , pp. 3246-3259
    • Ross, P.K.1    Solomon, E.I.2
  • 45
    • 0037444645 scopus 로고    scopus 로고
    • The spin-flip approach within time-dependent density functional theory: Theory and applications to diradicals
    • Shao, Y., Head-Gordon, M., Krylov, A. I. 2003. The spin-flip approach within time-dependent density functional theory: Theory and applications to diradicals. J Chem Phys 118, 4807-4818.
    • (2003) J Chem Phys , vol.118 , pp. 4807-4818
    • Shao, Y.1    Head-Gordon, M.2    Krylov, A.I.3
  • 47
    • 0027946619 scopus 로고
    • Classification of chemical bonds based on topological analysis of electron localization functions
    • Silvi, B., Savin, A. 1994. Classification of chemical bonds based on topological analysis of electron localization functions. Nature 371, 683-686.
    • (1994) Nature , vol.371 , pp. 683-686
    • Silvi, B.1    Savin, A.2
  • 48
    • 0035905357 scopus 로고    scopus 로고
    • Oxygen binding, activation, and reduction to water by copper proteins
    • Solomon, E. I., Chen, P., Metz, M., Lee, S. K., Palmer, A. E. 2001. Oxygen binding, activation, and reduction to water by copper proteins. Angew Chem Int Ed 40, 4570-4590.
    • (2001) Angew Chem Int Ed , vol.40 , pp. 4570-4590
    • Solomon, E.I.1    Chen, P.2    Metz, M.3    Lee, S.K.4    Palmer, A.E.5
  • 49
    • 33645548612 scopus 로고    scopus 로고
    • Using synthetic chemistry to understand copper protein active sites: a personal perspective
    • Tolman, W. B. 2006. Using synthetic chemistry to understand copper protein active sites: a personal perspective. J Biol Inorg Chem 11, 261-271.
    • (2006) J Biol Inorg Chem , vol.11 , pp. 261-271
    • Tolman, W.B.1
  • 50
    • 0024975122 scopus 로고
    • Crystal structure of hexameric haemocyanin from Panulirus interruptus refined at 3.2 Å resolution
    • Volbeda, A., Hol, W. G. J. 1989. Crystal structure of hexameric haemocyanin from Panulirus interruptus refined at 3. 2 Å resolution. J Mol Biol 209, 249-279.
    • (1989) J Mol Biol , vol.209 , pp. 249-279
    • Volbeda, A.1    Hol, W.G.J.2
  • 51
    • 20944435393 scopus 로고    scopus 로고
    • Time-dependent Density Functional Theory based on a noncollinear formulation of the exchange-correlation potential
    • Wang, F., Ziegler, T. 2004. Time-dependent Density Functional Theory based on a noncollinear formulation of the exchange-correlation potential. J Chem Phys 121, 12191-12196.
    • (2004) J Chem Phys , vol.121 , pp. 12191-12196
    • Wang, F.1    Ziegler, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.