-
3
-
-
33745361319
-
Reduction of dioxygen by enzymes containing copper
-
10.1007/s00775-006-0114-9. 16791638
-
Reduction of dioxygen by enzymes containing copper. I Bento MA Carrondo PF Lindley, J Biol Inorg Chem 2006 11 5 539 547 10.1007/s00775-006-0114-9 16791638
-
(2006)
J Biol Inorg Chem
, vol.11
, Issue.5
, pp. 539-547
-
-
Bento, I.1
Carrondo, M.A.2
Lindley, P.F.3
-
5
-
-
33646268426
-
Phylogenetic comparison and classification of laccase and related multicopper oxidase protein sequences
-
10.1111/j.1742-4658.2006.05247.x. 16650005
-
Phylogenetic comparison and classification of laccase and related multicopper oxidase protein sequences. PJ Hoegger S Kilaru TY James JR Thacker U Kues, FEBS J 2006 273 10 2308 2326 10.1111/j.1742-4658.2006.05247.x 16650005
-
(2006)
FEBS J
, vol.273
, Issue.10
, pp. 2308-2326
-
-
Hoegger, P.J.1
Kilaru, S.2
James, T.Y.3
Thacker, J.R.4
Kues, U.5
-
6
-
-
24744433115
-
Function and molecular evolution of multicopper blue proteins
-
10.1007/s00018-004-5076-x. 16091847
-
Function and molecular evolution of multicopper blue proteins. K Nakamura N Go, Cell Mol Life Sci 2005 62 18 2050 2066 10.1007/s00018-004-5076-x 16091847
-
(2005)
Cell Mol Life Sci
, vol.62
, Issue.18
, pp. 2050-2066
-
-
Nakamura, K.1
Go, N.2
-
7
-
-
75849159740
-
Laccases: A never-ending story
-
10.1007/s00018-009-0169-1. 19844659
-
Laccases: a never-ending story. P Giardina V Faraco C Pezzella A Piscitelli S Vanhulle G Sannia, Cell Mol Life Sci 2010 67 3 369 385 10.1007/s00018-009-0169-1 19844659
-
(2010)
Cell Mol Life Sci
, vol.67
, Issue.3
, pp. 369-385
-
-
Giardina, P.1
Faraco, V.2
Pezzella, C.3
Piscitelli, A.4
Vanhulle, S.5
Sannia, G.6
-
8
-
-
72049114963
-
Multicopper oxidases: A workshop on copper coordination chemistry, electron transfer, and metallophysiology
-
10.1007/s00775-009-0590-9. 19816718
-
Multicopper oxidases: a workshop on copper coordination chemistry, electron transfer, and metallophysiology. DJ Kosman, J Biol Inorg Chem 2010 15 1 15 28 10.1007/s00775-009-0590-9 19816718
-
(2010)
J Biol Inorg Chem
, vol.15
, Issue.1
, pp. 15-28
-
-
Kosman, D.J.1
-
9
-
-
0020010911
-
Enzymology of oxygen
-
10.1146/annurev.bi.51.070182.000321. 6287915
-
Enzymology of oxygen. BG Malmström, Ann Rev Biochem 1982 51 21 59 10.1146/annurev.bi.51.070182.000321 6287915
-
(1982)
Ann Rev Biochem
, vol.51
, pp. 21-59
-
-
Malmström, B.G.1
-
10
-
-
7744236144
-
Multicopper oxidases and oxygenases
-
10.1021/cr950046o. 11848837
-
Multicopper oxidases and oxygenases. EI Solomon UM Sundaram TE Machonkin, Chem Rev 1996 96 2563 2605 10.1021/cr950046o 11848837
-
(1996)
Chem Rev
, vol.96
, pp. 2563-2605
-
-
Solomon, E.I.1
Sundaram, U.M.2
Machonkin, T.E.3
-
11
-
-
0035905357
-
Oxygen Binding, Activation, and Reduction to Water by Copper Proteins
-
10.1002/1521-3773 (20011217)40:24 <4570::AID-ANIE4570 >3.0.CO;2-4. 12404359
-
Oxygen Binding, Activation, and Reduction to Water by Copper Proteins. EI Solomon P Chen M Metz SK Lee AE Palmer, Angew Chem Int Ed Engl 2001 40 24 4570 4590 10.1002/1521-3773(20011217)40:24<4570::AID-ANIE4570>3.0.CO;2-4 12404359
-
(2001)
Angew Chem Int Ed Engl
, vol.40
, Issue.24
, pp. 4570-4590
-
-
Solomon, E.I.1
Chen, P.2
Metz, M.3
Lee, S.K.4
Palmer, A.E.5
-
12
-
-
35648965701
-
Structure and function of type I copper in multicopper oxidases
-
10.1007/s00018-007-7183-y. 17639274
-
Structure and function of type I copper in multicopper oxidases. T Sakurai K Kataoka, Cell Mol Life Sci 2007 64 19-20 2642 2656 10.1007/s00018-007-7183-y 17639274
-
(2007)
Cell Mol Life Sci
, vol.64
, Issue.19-20
, pp. 2642-2656
-
-
Sakurai, T.1
Kataoka, K.2
-
13
-
-
33745870084
-
Mutations at Asp112 adjacent to the trinuclear Cu center in CueO as the proton donor in the four-electron reduction of dioxygen
-
10.1016/j.febslet.2006.06.049. 16828082
-
Mutations at Asp112 adjacent to the trinuclear Cu center in CueO as the proton donor in the four-electron reduction of dioxygen. Y Ueki M Inoue S Kurose K Kataoka T Sakurai, FEBS Lett 2006 580 17 4069 4072 10.1016/j.febslet.2006.06. 049 16828082
-
(2006)
FEBS Lett
, vol.580
, Issue.17
, pp. 4069-4072
-
-
Ueki, Y.1
Inoue, M.2
Kurose, S.3
Kataoka, K.4
Sakurai, T.5
-
14
-
-
67649771937
-
Four-electron reduction of dioxygen by a multicopper oxidase, CueO, and roles of Asp112 and Glu506 located adjacent to the trinuclear copper center
-
10.1074/jbc.M808468200. 19297322
-
Four-electron reduction of dioxygen by a multicopper oxidase, CueO, and roles of Asp112 and Glu506 located adjacent to the trinuclear copper center. K Kataoka R Sugiyama S Hirota M Inoue K Urata Y Minagawa D Seo T Sakurai, J Biol Chem 2009 284 21 14405 14413 10.1074/jbc.M808468200 19297322
-
(2009)
J Biol Chem
, vol.284
, Issue.21
, pp. 14405-14413
-
-
Kataoka, K.1
Sugiyama, R.2
Hirota, S.3
Inoue, M.4
Urata, K.5
Minagawa, Y.6
Seo, D.7
Sakurai, T.8
-
15
-
-
17644363018
-
Role of aspartate 94 in the decay of the peroxide intermediate in the multicopper oxidase Fet3p
-
10.1021/bi047379c. 15835897
-
Role of aspartate 94 in the decay of the peroxide intermediate in the multicopper oxidase Fet3p. L Quintanar C Stoj TP Wang DJ Kosman EI Solomon, Biochemistry 2005 44 16 6081 6091 10.1021/bi047379c 15835897
-
(2005)
Biochemistry
, vol.44
, Issue.16
, pp. 6081-6091
-
-
Quintanar, L.1
Stoj, C.2
Wang, T.P.3
Kosman, D.J.4
Solomon, E.I.5
-
16
-
-
35848952080
-
Spectroscopic and kinetic studies of perturbed trinuclear copper clusters: The role of protons in reductive cleavage of the O-O bond in the multicopper oxidase Fet3p
-
10.1021/ja073905m. 17918838
-
Spectroscopic and kinetic studies of perturbed trinuclear copper clusters: the role of protons in reductive cleavage of the O-O bond in the multicopper oxidase Fet3p. AJ Augustine L Quintanar CS Stoj DJ Kosman EI Solomon, J Am Chem Soc 2007 129 43 13118 13126 10.1021/ja073905m 17918838
-
(2007)
J Am Chem Soc
, vol.129
, Issue.43
, pp. 13118-13126
-
-
Augustine, A.J.1
Quintanar, L.2
Stoj, C.S.3
Kosman, D.J.4
Solomon, E.I.5
-
17
-
-
47949088663
-
O2 reduction to H2O by the multicopper oxidases
-
10.1039/b800799c. 18648693
-
O2 reduction to H2O by the multicopper oxidases. EI Solomon AJ Augustine J Yoon, Dalton Trans 2008 30 3921 3932 10.1039/b800799c 18648693
-
(2008)
Dalton Trans
, Issue.30
, pp. 3921-3932
-
-
Solomon, E.I.1
Augustine, A.J.2
Yoon, J.3
-
18
-
-
0037166265
-
Molecular and biochemical characterization of a highly stable bacterial laccase that occurs as a structural component of the Bacillus subtilis endospore coat
-
10.1074/jbc.M200827200. 11884407
-
Molecular and biochemical characterization of a highly stable bacterial laccase that occurs as a structural component of the Bacillus subtilis endospore coat. LO Martins CM Soares MM Pereira M Teixeira T Costa GH Jones AO Henriques, J Biol Chem 2002 277 21 18849 18859 10.1074/jbc.M200827200 11884407
-
(2002)
J Biol Chem
, vol.277
, Issue.21
, pp. 18849-18859
-
-
Martins, L.O.1
Soares, C.M.2
Pereira, M.M.3
Teixeira, M.4
Costa, T.5
Jones, G.H.6
Henriques, A.O.7
-
19
-
-
0033954256
-
The Protein Data Bank
-
10.1093/nar/28.1.235. 10592235
-
The Protein Data Bank. HM Berman J Westbrook Z Feng G Gilliland TN Bhat H Weissig IN Shindyalov PE Bourne, Nucleic Acids Res 2000 28 1 235 242 10.1093/nar/28.1.235 10592235
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
21
-
-
0026603624
-
Refined crystal structure of ascorbate oxidase at 1.9 A resolution
-
10.1016/0022-2836(92)90583-6. 1548698
-
Refined crystal structure of ascorbate oxidase at 1.9 A resolution. A Messerschmidt R Ladenstein R Huber M Bolognesi L Avigliano R Petruzzelli A Rossi A Finazzi-Agro, J Mol Biol 1992 224 1 179 205 10.1016/0022-2836(92)90583-6 1548698
-
(1992)
J Mol Biol
, vol.224
, Issue.1
, pp. 179-205
-
-
Messerschmidt, A.1
Ladenstein, R.2
Huber, R.3
Bolognesi, M.4
Avigliano, L.5
Petruzzelli, R.6
Rossi, A.7
Finazzi-Agro, A.8
-
22
-
-
33745747078
-
Perturbations of the T1 copper site in the CotA laccase from Bacillus subtilis: Structural, biochemical, enzymatic and stability studies
-
10.1007/s00775-006-0102-0. 16680453
-
Perturbations of the T1 copper site in the CotA laccase from Bacillus subtilis: structural, biochemical, enzymatic and stability studies. P Durao I Bento AT Fernandes EP Melo PF Lindley LO Martins, J Biol Inorg Chem 2006 11 4 514 526 10.1007/s00775-006-0102-0 16680453
-
(2006)
J Biol Inorg Chem
, vol.11
, Issue.4
, pp. 514-526
-
-
Durao, P.1
Bento, I.2
Fernandes, A.T.3
Melo, E.P.4
Lindley, P.F.5
Martins, L.O.6
-
23
-
-
44449110619
-
Proximal mutations at the type 1 copper site of CotA laccase: Spectroscopic, redox, kinetic and structural characterization of I494A and L386A mutants
-
10.1042/BJ20080166. 18307408
-
Proximal mutations at the type 1 copper site of CotA laccase: spectroscopic, redox, kinetic and structural characterization of I494A and L386A mutants. P Durao Z Chen CS Silva CM Soares MM Pereira S Todorovic P Hildebrandt I Bento PF Lindley LO Martins, Biochem J 2008 412 2 339 346 10.1042/BJ20080166 18307408
-
(2008)
Biochem J
, vol.412
, Issue.2
, pp. 339-346
-
-
Durao, P.1
Chen, Z.2
Silva, C.S.3
Soares, C.M.4
Pereira, M.M.5
Todorovic, S.6
Hildebrandt, P.7
Bento, I.8
Lindley, P.F.9
Martins, L.O.10
-
24
-
-
38649103815
-
Copper incorporation into recombinant CotA laccase from Bacillus subtilis: Characterization of fully copper loaded enzymes
-
10.1007/s00775-007-0312-0. 17957391
-
Copper incorporation into recombinant CotA laccase from Bacillus subtilis: characterization of fully copper loaded enzymes. P Durao Z Chen AT Fernandes P Hildebrandt DH Murgida S Todorovic MM Pereira EP Melo LO Martins, J Biol Inorg Chem 2008 13 2 183 193 10.1007/s00775-007-0312-0 17957391
-
(2008)
J Biol Inorg Chem
, vol.13
, Issue.2
, pp. 183-193
-
-
Durao, P.1
Chen, Z.2
Fernandes, A.T.3
Hildebrandt, P.4
Murgida, D.H.5
Todorovic, S.6
Pereira, M.M.7
Melo, E.P.8
Martins, L.O.9
-
25
-
-
0035941269
-
Conformational Component in the Coupled Transfer of Multiple Electrons and Protons in a Monomeric Tetraheme Cytochrome*
-
Conformational Component in the Coupled Transfer of Multiple Electrons and Protons in a Monomeric Tetraheme Cytochrome*. RO Louro I Bento PM Matias T Catarino AM Baptista CM Soares MA Carrondo DL Turner AV Xavier, JBiolChem 2001 276 44044 44051
-
(2001)
JBiolChem
, vol.276
, pp. 44044-44051
-
-
Louro, R.O.1
Bento, I.2
Matias, P.M.3
Catarino, T.4
Baptista, A.M.5
Soares, C.M.6
Carrondo, M.A.7
Turner, D.L.8
Xavier, A.V.9
-
26
-
-
0348047621
-
Molecular basis for redox-Bohr and cooperative effects in cytochrome c3 from Desulfovibrio desulfuricans ATCC 27774: Crystallographic and modeling studies of oxidized and reduced high-resolution structures at pH 7.6
-
10.1002/prot.10431. 14705030
-
Molecular basis for redox-Bohr and cooperative effects in cytochrome c3 from Desulfovibrio desulfuricans ATCC 27774: crystallographic and modeling studies of oxidized and reduced high-resolution structures at pH 7.6. I Bento PM Matias AM Baptista PN da Costa WM van Dongen LM Saraiva TR Schneider CM Soares MA Carrondo, Proteins 2004 54 1 135 152 10.1002/prot.10431 14705030
-
(2004)
Proteins
, vol.54
, Issue.1
, pp. 135-152
-
-
Bento, I.1
Matias, P.M.2
Baptista, A.M.3
Da Costa, P.N.4
Van Dongen, W.M.5
Saraiva, L.M.6
Schneider, T.R.7
Soares, C.M.8
Carrondo, M.A.9
-
27
-
-
46349107814
-
Looking for the minimum common denominator in haem-copper oxygen reductases: Towards a unified catalytic mechanism
-
10.1016/j.bbabio.2008.05.441. 18515066
-
Looking for the minimum common denominator in haem-copper oxygen reductases: towards a unified catalytic mechanism. MM Pereira FL Sousa AF Verissimo M Teixeira, Biochim Biophys Acta 2008 1777 7-8 929 934 10.1016/j.bbabio.2008.05.441 18515066
-
(2008)
Biochim Biophys Acta
, vol.1777
, Issue.7-8
, pp. 929-934
-
-
Pereira, M.M.1
Sousa, F.L.2
Verissimo, A.F.3
Teixeira, M.4
-
28
-
-
39949085428
-
Electrostatic control of proton pumping in cytochrome c oxidase
-
10.1016/j.bbabio.2007.11.010. 18177731
-
Electrostatic control of proton pumping in cytochrome c oxidase. E Fadda CH Yu R Pomes, Biochim Biophys Acta 2008 1777 3 277 284 10.1016/j.bbabio.2007. 11.010 18177731
-
(2008)
Biochim Biophys Acta
, vol.1777
, Issue.3
, pp. 277-284
-
-
Fadda, E.1
Yu, C.H.2
Pomes, R.3
-
29
-
-
0031880698
-
The coupling of electron transfer and proton translocation: Electrostatic calculations on Paracoccus denitrificans cytochrome c oxidase
-
10.1016/S0006-3495(98)73996-7. 9533684
-
The coupling of electron transfer and proton translocation: electrostatic calculations on Paracoccus denitrificans cytochrome c oxidase. A Kannt CR Lancaster H Michel, Biophys J 1998 74 2 Pt 1 708 721 10.1016/S0006-3495(98) 73996-7 9533684
-
(1998)
Biophys J
, vol.74
, Issue.2 PART 1
, pp. 708-721
-
-
Kannt, A.1
Lancaster, C.R.2
Michel, H.3
-
30
-
-
1242314254
-
Electrostatic study of the proton pumping mechanism in bovine heart cytochrome C oxidase
-
10.1021/ja038267w. 14871119
-
Electrostatic study of the proton pumping mechanism in bovine heart cytochrome C oxidase. DM Popovic AA Stuchebrukhov, J Am Chem Soc 2004 126 6 1858 1871 10.1021/ja038267w 14871119
-
(2004)
J Am Chem Soc
, vol.126
, Issue.6
, pp. 1858-1871
-
-
Popovic, D.M.1
Stuchebrukhov, A.A.2
-
31
-
-
13444305368
-
Proton exit channels in bovine cytochrome c oxidase
-
10.1021/jp0464371. 16851184
-
Proton exit channels in bovine cytochrome c oxidase. DM Popovic AA Stuchebrukhov, J Phys Chem B 2005 109 5 1999 2006 10.1021/jp0464371 16851184
-
(2005)
J Phys Chem B
, vol.109
, Issue.5
, pp. 1999-2006
-
-
Popovic, D.M.1
Stuchebrukhov, A.A.2
-
32
-
-
1542298196
-
Investigation of protonatable residues in Rhodothermus marinus caa3 haem-copper oxygen reductase: Comparison with Paracoccus denitrificans aa3 haem-copper oxygen reductase
-
10.1007/s00775-003-0509-9. 14691678
-
Investigation of protonatable residues in Rhodothermus marinus caa3 haem-copper oxygen reductase: comparison with Paracoccus denitrificans aa3 haem-copper oxygen reductase. CM Soares AM Baptista MM Pereira M Teixeira, J Biol Inorg Chem 2004 9 2 124 134 10.1007/s00775-003-0509-9 14691678
-
(2004)
J Biol Inorg Chem
, vol.9
, Issue.2
, pp. 124-134
-
-
Soares, C.M.1
Baptista, A.M.2
Pereira, M.M.3
Teixeira, M.4
-
33
-
-
0038143259
-
Crystal Structure of a Bacterial Endospore Coat Component: A LACCASE WITH ENHANCED THERMOSTABILITY PROPERTIES
-
10.1074/jbc.M301251200. 12637519
-
Crystal Structure of a Bacterial Endospore Coat Component: A LACCASE WITH ENHANCED THERMOSTABILITY PROPERTIES. FJ Enguita LO Martins AO Henriques MA Carrondo, J Biol Chem 2003 278 21 19416 19425 10.1074/jbc.M301251200 12637519
-
(2003)
J Biol Chem
, vol.278
, Issue.21
, pp. 19416-19425
-
-
Enguita, F.J.1
Martins, L.O.2
Henriques, A.O.3
Carrondo, M.A.4
-
34
-
-
33750052272
-
A crystallographic and spectroscopic study on the effect of X-ray radiation on the crystal structure of Melanocarpus albomyces laccase
-
10.1016/j.bbrc.2006.09.144. 17045575
-
A crystallographic and spectroscopic study on the effect of X-ray radiation on the crystal structure of Melanocarpus albomyces laccase. N Hakulinen K Kruus A Koivula J Rouvinen, Biochem Biophys Res Commun 2006 350 4 929 934 10.1016/j.bbrc.2006.09.144 17045575
-
(2006)
Biochem Biophys Res Commun
, vol.350
, Issue.4
, pp. 929-934
-
-
Hakulinen, N.1
Kruus, K.2
Koivula, A.3
Rouvinen, J.4
-
35
-
-
0030567363
-
Chemical and spectroscopic definition of the peroxide-level intermediate in the multicopper oxidases: Relevance to the catalytic mechanism of dioxygen reduction to water
-
DOI 10.1021/ja953621e
-
Chemical and Spectroscopic Definition of the Peroxide-Level Intermediate in the Multicopper Oxidases: Relevance to the Catalytic Mechanism of Dioxygen Reduction to Water. W Shin UM Sundaram JL Cole HH Zhang B Hedman KO Hodgson EI Solomon, J Am Chem Soc 1996 118 3202 3215 10.1021/ja953621e (Pubitemid 26135510)
-
(1996)
Journal of the American Chemical Society
, vol.118
, Issue.13
, pp. 3202-3215
-
-
Shin, W.1
Sundaram, U.M.2
Cole, J.L.3
Zhang, H.H.4
Hedman, B.5
Hodgson, K.O.6
Solomon, E.I.7
-
36
-
-
0034808304
-
Decay of the peroxide intermediate in laccase: Reductive cleavage of the O-O bond
-
10.1021/ja010365z. 11439045
-
Decay of the peroxide intermediate in laccase: reductive cleavage of the O-O bond. AE Palmer SK Lee EI Solomon, J Am Chem Soc 2001 123 27 6591 6599 10.1021/ja010365z 11439045
-
(2001)
J Am Chem Soc
, vol.123
, Issue.27
, pp. 6591-6599
-
-
Palmer, A.E.1
Lee, S.K.2
Solomon, E.I.3
-
37
-
-
33846524439
-
Motifs for molecular recognition exploiting hydrophobic enclosure in protein-ligand binding
-
10.1073/pnas.0610202104. 17204562
-
Motifs for molecular recognition exploiting hydrophobic enclosure in protein-ligand binding. T Young R Abel B Kim BJ Berne RA Friesner, Proc Natl Acad Sci USA 2007 104 3 808 813 10.1073/pnas.0610202104 17204562
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.3
, pp. 808-813
-
-
Young, T.1
Abel, R.2
Kim, B.3
Berne, B.J.4
Friesner, R.A.5
-
38
-
-
44049083019
-
A dry ligand-binding cavity in a solvated protein
-
10.1073/pnas.0709844105. 18427121
-
A dry ligand-binding cavity in a solvated protein. J Qvist M Davidovic D Hamelberg B Halle, Proc Natl Acad Sci USA 2008 105 17 6296 6301 10.1073/pnas.0709844105 18427121
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.17
, pp. 6296-6301
-
-
Qvist, J.1
Davidovic, M.2
Hamelberg, D.3
Halle, B.4
-
39
-
-
67449084506
-
Dewetting and hydrophobic interaction in physical and biological systems
-
10.1146/annurev.physchem.58.032806.104445. 18928403
-
Dewetting and hydrophobic interaction in physical and biological systems. BJ Berne JD Weeks R Zhou, Annu Rev Phys Chem 2009 60 85 103 10.1146/annurev.physchem.58.032806.104445 18928403
-
(2009)
Annu Rev Phys Chem
, vol.60
, pp. 85-103
-
-
Berne, B.J.1
Weeks, J.D.2
Zhou, R.3
-
40
-
-
77953502244
-
Dewetting transitions in protein cavities
-
20225258
-
Dewetting transitions in protein cavities. T Young L Hua X Huang R Abel R Friesner BJ Berne, Proteins 2010 78 8 1856 1869 20225258
-
(2010)
Proteins
, vol.78
, Issue.8
, pp. 1856-1869
-
-
Young, T.1
Hua, L.2
Huang, X.3
Abel, R.4
Friesner, R.5
Berne, B.J.6
-
41
-
-
33749043747
-
Et tu, Grotthuss! and other unfinished stories
-
10.1016/j.bbabio.2005.12.001. 16414007
-
Et tu, Grotthuss! and other unfinished stories. S Cukierman, Biochim Biophys Acta 2006 1757 8 876 885 10.1016/j.bbabio.2005.12.001 16414007
-
(2006)
Biochim Biophys Acta
, vol.1757
, Issue.8
, pp. 876-885
-
-
Cukierman, S.1
-
42
-
-
23844500381
-
On the use of different dielectric constants for computing individual and pairwise terms in poisson-boltzmann studies of protein ionization equilibrium
-
10.1021/jp052259f. 16852854
-
On the use of different dielectric constants for computing individual and pairwise terms in poisson-boltzmann studies of protein ionization equilibrium. VH Teixeira CA Cunha M Machuqueiro AS Oliveira BL Victor CM Soares AM Baptista, J Phys Chem B 2005 109 30 14691 14706 10.1021/jp052259f 16852854
-
(2005)
J Phys Chem B
, vol.109
, Issue.30
, pp. 14691-14706
-
-
Teixeira, V.H.1
Cunha, C.A.2
Machuqueiro, M.3
Oliveira, A.S.4
Victor, B.L.5
Soares, C.M.6
Baptista, A.M.7
-
43
-
-
66249116311
-
Structure of native laccase from Trametes hirsuta at 1.8 A resolution
-
10.1107/S0907444909011950
-
Structure of native laccase from Trametes hirsuta at 1.8 A resolution. KM Polyakov TV Fedorova EV Stepanova EA Cherkashin SA Kurzeev BV Strokopytov VS Lamzin OV Koroleva, Acta Cryst D 2009 65 611 617 10.1107/S0907444909011950
-
(2009)
Acta Cryst D
, vol.65
, pp. 611-617
-
-
Polyakov, K.M.1
Fedorova, T.V.2
Stepanova, E.V.3
Cherkashin, E.A.4
Kurzeev, S.A.5
Strokopytov, B.V.6
Lamzin, V.S.7
Koroleva, O.V.8
-
44
-
-
0033001692
-
3using continuum electrostatics
-
10.1016/S0006-3495(99)77452-7
-
3using continuum electrostatics. AM Baptista PJ Martel CM Soares, BiophysJ 1999 76 2978 2998 10.1016/S0006-3495(99) 77452-7
-
(1999)
BiophysJ
, vol.76
, pp. 2978-2998
-
-
Baptista, A.M.1
Martel, P.J.2
Soares, C.M.3
-
45
-
-
35348820448
-
The two oxidized forms of the trinuclear Cu cluster in the multicopper oxidases and mechanism for the decay of the native intermediate
-
10.1073/pnas.0705137104. 17702865
-
The two oxidized forms of the trinuclear Cu cluster in the multicopper oxidases and mechanism for the decay of the native intermediate. J Yoon BD Liboiron R Sarangi KO Hodgson B Hedman EI Solomon, Proc Natl Acad Sci USA 2007 104 34 13609 13614 10.1073/pnas.0705137104 17702865
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.34
, pp. 13609-13614
-
-
Yoon, J.1
Liboiron, B.D.2
Sarangi, R.3
Hodgson, K.O.4
Hedman, B.5
Solomon, E.I.6
-
46
-
-
0037022682
-
Crystal structure and electron transfer kinetics of CueO, a multicopper oxidase required for copper homeostasis in Escherichia coli
-
10.1073/pnas.052710499. 11867755
-
Crystal structure and electron transfer kinetics of CueO, a multicopper oxidase required for copper homeostasis in Escherichia coli. SA Roberts A Weichsel G Grass K Thakali JT Hazzard G Tollin C Rensing WR Montfort, Proc Natl Acad Sci USA 2002 99 5 2766 2771 10.1073/pnas.052710499 11867755
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.5
, pp. 2766-2771
-
-
Roberts, S.A.1
Weichsel, A.2
Grass, G.3
Thakali, K.4
Hazzard, J.T.5
Tollin, G.6
Rensing, C.7
Montfort, W.R.8
-
47
-
-
0036359052
-
Studies of the reduction and protonation behavior of tetraheme cytochromes using atomic detail
-
DOI 10.1007/s007750100287
-
Studies of the reduction and protonation behaviour of tetrahaem cytochromes using atomic detail. VH Teixeira CM Soares AM Baptista, J BioI Inorg Chem 2002 7 200 216 10.1007/s007750100287 (Pubitemid 41490233)
-
(2002)
Journal of Biological Inorganic Chemistry
, vol.7
, Issue.1-2
, pp. 200-216
-
-
Teixeira, V.H.1
Soares, C.M.2
Baptista, A.M.3
-
48
-
-
33947285426
-
Exploring pathways and barriers for coupled ET/PT in cytochrome c oxidase: A general framework for examining energetics and mechanistic alternatives
-
10.1016/j.bbabio.2007.01.015. 17350588
-
Exploring pathways and barriers for coupled ET/PT in cytochrome c oxidase: a general framework for examining energetics and mechanistic alternatives. MH Olsson PE Siegbahn MR Blomberg A Warshel, Biochim Biophys Acta 2007 1767 3 244 260 10.1016/j.bbabio.2007.01.015 17350588
-
(2007)
Biochim Biophys Acta
, vol.1767
, Issue.3
, pp. 244-260
-
-
Olsson, M.H.1
Siegbahn, P.E.2
Blomberg, M.R.3
Warshel, A.4
-
49
-
-
33646268674
-
Monte Carlo simulations of proton pumps: on the working principles of the biological valve that controls proton pumping in cytochrome c oxidase
-
10.1073/pnas.0510860103. 16614069
-
Monte Carlo simulations of proton pumps: on the working principles of the biological valve that controls proton pumping in cytochrome c oxidase. MH Olsson A Warshel, Proc Natl Acad Sci USA 2006 103 17 6500 6505 10.1073/pnas.0510860103 16614069
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.17
, pp. 6500-6505
-
-
Olsson, M.H.1
Warshel, A.2
-
50
-
-
0036312463
-
Crystal structure of a laccase from Melanocarpus albomyces with an intact trinuclear copper site
-
12118243
-
Crystal structure of a laccase from Melanocarpus albomyces with an intact trinuclear copper site. N Hakulinen LL Kiiskinen K Kruus M Saloheimo A Paananen A Koivula J Rouvinen, Nat Struct Biol 2002 9 8 601 605 12118243
-
(2002)
Nat Struct Biol
, vol.9
, Issue.8
, pp. 601-605
-
-
Hakulinen, N.1
Kiiskinen, L.L.2
Kruus, K.3
Saloheimo, M.4
Paananen, A.5
Koivula, A.6
Rouvinen, J.7
-
51
-
-
66149130352
-
Geometric and electronic structure differences between the type 3 copper sites of the multicopper oxidases and hemocyanin/tyrosinase
-
10.1073/pnas.0902127106. 19346471
-
Geometric and electronic structure differences between the type 3 copper sites of the multicopper oxidases and hemocyanin/tyrosinase. J Yoon S Fujii EI Solomon, Proc Natl Acad Sci USA 2009 106 16 6585 6590 10.1073/pnas.0902127106 19346471
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.16
, pp. 6585-6590
-
-
Yoon, J.1
Fujii, S.2
Solomon, E.I.3
-
52
-
-
77749279617
-
The role of Glu(498) in the dioxygen reactivity of CotA-laccase from Bacillus subtilis
-
10.1039/b922734b. 20200715
-
The role of Glu(498) in the dioxygen reactivity of CotA-laccase from Bacillus subtilis. Z Chen P Durao CS Silva MM Pereira S Todorovic P Hildebrandt I Bento PF Lindley LO Martins, Dalton Trans 2010 39 11 2875 2882 10.1039/b922734b 20200715
-
(2010)
Dalton Trans
, vol.39
, Issue.11
, pp. 2875-2882
-
-
Chen, Z.1
Durao, P.2
Silva, C.S.3
Pereira, M.M.4
Todorovic, S.5
Hildebrandt, P.6
Bento, I.7
Lindley, P.F.8
Martins, L.O.9
-
54
-
-
33644874235
-
The integration of macromolecular diffraction data
-
16369093
-
The integration of macromolecular diffraction data. AG Leslie, Acta Crystallogr D 2006 62 Pt 1 48 57 16369093
-
(2006)
Acta Crystallogr D
, vol.62
, Issue.PART 1
, pp. 48-57
-
-
Leslie, A.G.1
-
55
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
The CCP4 suite: programs for protein crystallography. CCP4 CCP, Number 4, Acta Cryst 1994 D50 760 763
-
(1994)
Acta Cryst
, vol.50
, pp. 760-763
-
-
-
56
-
-
0000560808
-
MOLREP: An Automated Program for Molecular Replacement
-
10.1107/S0021889897006766
-
MOLREP: an Automated Program for Molecular Replacement. A Vagin A Teplyakov, J Appl Cryst 1997 30 1022 1025 10.1107/S0021889897006766
-
(1997)
J Appl Cryst
, vol.30
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
57
-
-
0032897075
-
Efficient anisotropic refinement of macromolecular structures using FFT
-
10.1107/S090744499801405X. 10089417
-
Efficient anisotropic refinement of macromolecular structures using FFT. GN Murshudov AA Vagin A Lebedev KS Wilson EJ Dodson, Acta Crystallogr D 1999 55 Pt 1 247 255 10.1107/S090744499801405X 10089417
-
(1999)
Acta Crystallogr D
, vol.55
, Issue.PART 1
, pp. 247-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Lebedev, A.3
Wilson, K.S.4
Dodson, E.J.5
-
58
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
10.1107/S0907444904019158. 15572765
-
Coot: model-building tools for molecular graphics. P Emsley K Cowtan, Acta Crystallogr D Biol Crystallogr 2004 60 Pt 12 Pt 1 2126 2132 10.1107/S0907444904019158 15572765
-
(2004)
Acta Crystallogr D Biol Crystallogr
, vol.60
, Issue.PART 12
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
59
-
-
48349141173
-
Oxygen pressurized X-ray crystallography: Probing the dioxygen binding site in cofactorless urate oxidase and implications for its catalytic mechanism
-
10.1529/biophysj.107.122184. 18375516
-
Oxygen pressurized X-ray crystallography: probing the dioxygen binding site in cofactorless urate oxidase and implications for its catalytic mechanism. N Colloc'h L Gabison G Monard M Altarsha M Chiadmi G Marassio J Sopkova-de Oliveira Santos M El Hajji B Castro JH Abraini, et al. Biophys J 2008 95 5 2415 2422 10.1529/biophysj.107.122184 18375516
-
(2008)
Biophys J
, vol.95
, Issue.5
, pp. 2415-2422
-
-
Colloc'h, N.1
Gabison, L.2
Monard, G.3
Altarsha, M.4
Chiadmi, M.5
Marassio, G.6
Sopkova-De Oliveira Santos, J.7
El Hajji, M.8
Castro, B.9
Abraini, J.H.10
-
60
-
-
0036086458
-
A microspectrophotometer for UV-visible absorption and fluorescence studies of protein crystals
-
DOI 10.1107/S0021889802003837
-
A microspectrophotometer for UV-visible and fluorescence studies of protein crystals. D Bourgeois X Vernède V Adam E Fioravanti T Ursby, Journal of Applied Crystallography 2002 35 319 326 10.1107/S0021889802003837 (Pubitemid 34662861)
-
(2002)
Journal of Applied Crystallography
, vol.35
, Issue.3
, pp. 319-326
-
-
Bourgeois, D.1
Vernede, X.2
Adam, V.3
Fioravanti, E.4
Ursby, T.5
-
61
-
-
0035120969
-
Some theoretical and computational aspects of the inclusion of proton isomerism in the protonation equilibrium of proteins
-
Some theoretical and computational aspects of the inclusion of proton isomerism in the protonation equilibrium of proteins. AM Baptista CM Soares, JPhysChem B 2001 105 293 309
-
(2001)
JPhysChem B
, vol.105
, pp. 293-309
-
-
Baptista, A.M.1
Soares, C.M.2
-
62
-
-
2442693239
-
Macroscopic electrostatic models for protonation states in proteins
-
10.2741/1187. 14977531
-
Macroscopic electrostatic models for protonation states in proteins. D Bashford, Front Biosci 2004 9 1082 1099 10.2741/1187 14977531
-
(2004)
Front Biosci
, vol.9
, pp. 1082-1099
-
-
Bashford, D.1
-
63
-
-
0026612756
-
Electrostatic calculations of the pKa values of ionizable groups in bacteriorhodopsin
-
Electrostatic calculations of the pKa values of ionizable groups in bacteriorhodopsin. D Bashford K Gerwert, JMolBiol 1992 224 473 486
-
(1992)
JMolBiol
, vol.224
, pp. 473-486
-
-
Bashford, D.1
Gerwert, K.2
-
64
-
-
84957665033
-
An Object-Oriented Programming Suite for Electrostatic Effects in Biological Molecules
-
Berlin: ISCOPE97, Springer Ishikawa Y, Oldehoeft RR, Reynders JVW, Tholburn M.
-
An Object-Oriented Programming Suite for Electrostatic Effects in Biological Molecules. D Bashford, Scientific Computing in Object-Oriented Parallel Environments Berlin: ISCOPE97, Springer, Ishikawa Y, Oldehoeft RR, Reynders JVW, Tholburn M, 1997 1343 233 240
-
(1997)
Scientific Computing in Object-Oriented Parallel Environments
, vol.1343
, pp. 233-240
-
-
Bashford, D.1
-
65
-
-
0003544049
-
-
Zurich, Groninger: BIOMOS b.v
-
Biomolecular simulation: The GROMOS96 manual and user guide. WF van Gunsteren SR Billeter AA Eising PH Hunenberger P Kruger AE Mark WRP Scott IG Tironi, Zurich, Groninger: BIOMOS b.v. 1996
-
(1996)
Biomolecular simulation: The GROMOS96 manual and user guide
-
-
Van Gunsteren, W.F.1
Billeter, S.R.2
Eising, A.A.3
Hunenberger, P.H.4
Kruger, P.5
Mark, A.E.6
Scott, W.R.P.7
Tironi, I.G.8
-
66
-
-
0008819754
-
The GROMOS biomolecular simulation program package
-
The GROMOS biomolecular simulation program package. WRP Scott PH Hünenberger IG Tironi AE Mark SR Billeter J Fennen AE Torda T Huber P Krüger WF van Gunsteren, JPhysChem 1999 103 3596 3607
-
(1999)
JPhysChem
, vol.103
, pp. 3596-3607
-
-
Scott, W.R.P.1
Hünenberger, P.H.2
Tironi, I.G.3
Mark, A.E.4
Billeter, S.R.5
Fennen, J.6
Torda, A.E.7
Huber, T.8
Krüger, P.9
Van Gunsteren, W.F.10
-
67
-
-
0004133516
-
-
Pittsburgh PA: Gaussian, Inc
-
Gaussian 98, Revision A.7. MJ Frisch GW Trucks HB Schlegel GE Scuseria MA Robb JR Cheeseman VG Zakrzewski J Montgomery A J RE Stratmann JC Burant, et al. Pittsburgh PA: Gaussian, Inc 1998
-
(1998)
Gaussian 98, Revision A.7
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Zakrzewski, V.G.7
Montgomery, J.8
Stratmann, R.E.9
Burant, J.C.10
-
68
-
-
3042524904
-
A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: The RESP model
-
A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: the RESP model. CI Bayly P Cieplak WD Cornell PA Kollman, JPhysChem 1993 97 10269 10280
-
(1993)
JPhysChem
, vol.97
, pp. 10269-10280
-
-
Bayly, C.I.1
Cieplak, P.2
Cornell, W.D.3
Kollman, P.A.4
-
70
-
-
0013815214
-
Stereochemical criteria for polypeptide and protein chain conformations. II. Allowed conformations for a pair of peptide units
-
10.1016/S0006-3495(65)86759-5. 5884016
-
Stereochemical criteria for polypeptide and protein chain conformations. II. Allowed conformations for a pair of peptide units. C Ramakrishnan GN Ramachandran, Biophys J 1965 5 6 909 933 10.1016/S0006-3495(65)86759-5 5884016
-
(1965)
Biophys J
, vol.5
, Issue.6
, pp. 909-933
-
-
Ramakrishnan, C.1
Ramachandran, G.N.2
-
71
-
-
0037441653
-
Structure validation by Calpha geometry: Phi,psi and Cbeta deviation
-
10.1002/prot.10286. 12557186
-
Structure validation by Calpha geometry: phi,psi and Cbeta deviation. SC Lovell IW Davis WB Arendall PI de Bakker JM Word MG Prisant JS Richardson DC Richardson, Proteins 2003 50 3 437 450 10.1002/prot.10286 12557186
-
(2003)
Proteins
, vol.50
, Issue.3
, pp. 437-450
-
-
Lovell, S.C.1
Davis, I.W.2
Arendall, W.B.3
De Bakker, P.I.4
Word, J.M.5
Prisant, M.G.6
Richardson, J.S.7
Richardson, D.C.8
|