-
1
-
-
77950630179
-
Towards structured output prediction of enzyme function
-
Astikainen, K., Holm, L., Pitknen, E., Szedmak, S., and Rousu, J. (2008). Towards structured output prediction of enzyme function. BMC Proceedings, 2(S4):S2.
-
(2008)
BMC Proceedings
, vol.2
, Issue.S4
-
-
Astikainen, K.1
Holm, L.2
Pitknen, E.3
Szedmak, S.4
Rousu, J.5
-
2
-
-
33645323768
-
Hierarchical multi-label prediction of gene function
-
Barutcuoglu, Z., Schapire, R., and Troyanskaya, O. (2006). Hierarchical multi-label prediction of gene function. Bioinformatics, 22(7):830-836.
-
(2006)
Bioinformatics
, vol.22
, Issue.7
, pp. 830-836
-
-
Barutcuoglu, Z.1
Schapire, R.2
Troyanskaya, O.3
-
3
-
-
77949529159
-
Decision trees for hierarchical multilabel classification: A case study in functional genomics
-
Blockeel, H., Schietgat, L., Struyf, J., et al. (2006). Decision trees for hierarchical multilabel classification: A case study in functional genomics. In PKDD.
-
(2006)
PKDD
-
-
Blockeel, H.1
Schietgat, L.2
Struyf, J.3
-
4
-
-
33745771638
-
Protein function prediction via graph kernels
-
Borgwardt, K. M., Ong, C. S., Schnauer, S., Vishwanathan, S. V. N., Smola, A. J., and Kriegel, H.-P. (2005). Protein function prediction via graph kernels. Bioinformatics, 21(1):47-56.
-
(2005)
Bioinformatics
, vol.21
, Issue.1
, pp. 47-56
-
-
Borgwardt, K.M.1
Ong, C.S.2
Schnauer, S.3
Vishwanathan, S.V.N.4
Smola, A.J.5
Kriegel, H.-P.6
-
5
-
-
0036169141
-
Machine learning of functional class from phenotype data
-
Clare, A. and King, R. (2002). Machine learning of functional class from phenotype data. Bioinformatics, 18(1):160-166.
-
(2002)
Bioinformatics
, vol.18
, Issue.1
, pp. 160-166
-
-
Clare, A.1
King, R.2
-
6
-
-
0036084361
-
The prosite database, its status in 2002
-
Falquet, L., Pagni, M., Bucher, P., Hulo, N., Sigrist, C., Hofmann, K., and Bairoch, A. (2002). The prosite database, its status in 2002. Nucleic Acids Research, 30(1):235.
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.1
, pp. 235
-
-
Falquet, L.1
Pagni, M.2
Bucher, P.3
Hulo, N.4
Sigrist, C.5
Hofmann, K.6
Bairoch, A.7
-
7
-
-
4444231365
-
A survey of kernels for structured data
-
Gartner, T. (2003). A survey of kernels for structured data. SIGKDD Explorations, 5.
-
(2003)
SIGKDD Explorations
, vol.5
-
-
Gartner, T.1
-
8
-
-
0036081122
-
Ligand: Database of chemical compounds and reactions in biological pathways
-
Goto, S., Okuno, Y., Hattorf, M., Nishioka, T., and Kanehisa, M. (2002). Ligand: database of chemical compounds and reactions in biological pathways. Nucleic Acids Research, 30(1):402.
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.1
, pp. 402
-
-
Goto, S.1
Okuno, Y.2
Hattorf, M.3
Nishioka, T.4
Kanehisa, M.5
-
9
-
-
38549113430
-
Pairsdb atlas of protein sequence space
-
Heger, A., Korpelainen, E., Hupponen, T., Mattila, K., Ollikainen, V., and Holm, L. (2008). Pairsdb atlas of protein sequence space. Nucl. Acids Res., 36:D276-D280.
-
(2008)
Nucl. Acids Res.
, vol.36
-
-
Heger, A.1
Korpelainen, E.2
Hupponen, T.3
Mattila, K.4
Ollikainen, V.5
Holm, L.6
-
10
-
-
34548733641
-
The global trace graph, a novel paradigm for searching protein sequence databases
-
Heger, A., Mallick, S., Wilton, C., and Holm, L. (2007). The global trace graph, a novel paradigm for searching protein sequence databases. Bioinformatics, 23(18).
-
(2007)
Bioinformatics
, vol.23
, Issue.18
-
-
Heger, A.1
Mallick, S.2
Wilton, C.3
Holm, L.4
-
12
-
-
0030765455
-
Dali/fssp classification of three-dimensional protein folds
-
Holm, L. and Sander, C. (1996). Dali/fssp classification of three-dimensional protein folds. Nucleic Acids Research, 25(1):231-234.
-
(1996)
Nucleic Acids Research
, vol.25
, Issue.1
, pp. 231-234
-
-
Holm, L.1
Sander, C.2
-
13
-
-
13444307044
-
Secondary-structure matching (ssm), a new tool for fast protein structure alignment in three dimensions
-
Krissinel, E. and Henrick, K. (2004). Secondary-structure matching (ssm), a new tool for fast protein structure alignment in three dimensions. Acta Crystallographica D Biol Crystallogr, 60(1 Part 12):2256-2268.
-
(2004)
Acta Crystallographica D Biol Crystallogr
, vol.60
, Issue.1 PART 12
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
14
-
-
2442674422
-
Kernel-based data fusion and its application to protein function prediction in yeast
-
Lanckriet, G., Deng, M., Cristianini, N., et al. (2004). Kernel-based data fusion and its application to protein function prediction in yeast. PSB, 2004.
-
(2004)
PSB 2004
-
-
Lanckriet, G.1
Deng, M.2
Cristianini, N.3
-
15
-
-
0000515372
-
Interpro: An integrated documentation resource for protein families, domains and functional sites
-
Mulder, N., Apweiler, R., Attwood, T., Bairoch, A., Bate-man, A., Binns, D., Biswas, M., Bradley, P., Bork, P., Bucher, P., et al. (2002). Interpro: An integrated documentation resource for protein families, domains and functional sites. Briefings in Bioinformatics, 3(3):225-235.
-
(2002)
Briefings in Bioinformatics
, vol.3
, Issue.3
, pp. 225-235
-
-
Mulder, N.1
Apweiler, R.2
Attwood, T.3
Bairoch, A.4
Bate-Man, A.5
Binns, D.6
Biswas, M.7
Bradley, P.8
Bork, P.9
Bucher, P.10
-
17
-
-
55449125498
-
The rough guide to in silico function prediction, or how to use sequence and structure information to predict protein function
-
Punta, M. and Ofran, Y. (2008). The rough guide to in silico function prediction, or how to use sequence and structure information to predict protein function. PLoS Computational Biology, 4(10).
-
(2008)
PLoS Computational Biology
, vol.4
, Issue.10
-
-
Punta, M.1
Ofran, Y.2
-
18
-
-
33745768424
-
Kernel-based learning of hierarchical multil-abel classification models
-
Rousu, J., Saunders, C., Szedmak, S., and Shawe-Taylor, J. (2006). Kernel-based learning of hierarchical multil-abel classification models. JMLR, 7.
-
(2006)
JMLR
, vol.7
-
-
Rousu, J.1
Saunders, C.2
Szedmak, S.3
Shawe-Taylor, J.4
-
19
-
-
0000487102
-
Estimating the support of a high-dimensional distribution
-
Schikopf, B., Piatt, J. C., Shawe-Taylor, J., Smola, A. J., and Williamson, R. C. (2001). Estimating the support of a high-dimensional distribution. Neural Computation, 13(7):1443-1471.
-
(2001)
Neural Computation
, vol.13
, Issue.7
, pp. 1443-1471
-
-
Schikopf, B.1
Piatt, J.C.2
Shawe-Taylor, J.3
Smola, A.J.4
Williamson, R.C.5
-
21
-
-
34249014147
-
Learning via linear operators: Maximum margin regression
-
Szedmak, S., Shawe-Taylor, J., and Parado-Hernandez, E. (2005). Learning via linear operators: Maximum margin regression. Technical report, Pascal.
-
(2005)
Technical Report, Pascal
-
-
Szedmak, S.1
Shawe-Taylor, J.2
Parado-Hernandez, E.3
-
23
-
-
14344250451
-
Support vector machine learning for interdependent and structured output spaces
-
Tsochantaridis, I., Hofmann, T., Joachims, T., and Altun, Y. (2004). Support vector machine learning for interdependent and structured output spaces. In ICML.
-
(2004)
ICML
-
-
Tsochantaridis, I.1
Hofmann, T.2
Joachims, T.3
Altun, Y.4
-
24
-
-
3242887315
-
Fatcat: A web server for flexible structure comparison and structure similarity searching
-
(Web Server Issue)
-
Ye, Y. and Godzik, A. (2004). Fatcat: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Research, 32(Web Server Issue):W582.
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Ye, Y.1
Godzik, A.2
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