Diversity of killer cell immunoglobulin-like receptor genes in Indonesian populations of Sumatra, Sulawesi and Moluccas Islands

Tissue Antigens

Volumn 76, Issue 4, 2010, Pages 325-330

  Velickovic, M ^a,b   Velickovic, Z ^a,b   Panigoro, R ^c   Dunckley, H ^a,b  

^a AUSTRALIAN RED CROSS BLOOD SERVICE   (Australia)

^b University of Sydney   (Australia)

^c PADJADJARAN UNIVERSITY   (Indonesia)

Author keywords

killer immunoglobulin like receptors; killer immunoglobulin like receptors genotypes; Moluccas; Sulawesi; Sumatra

Indexed keywords

KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DL2; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DL3; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DL4; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 3DP1; MEMBRANE RECEPTOR; UNCLASSIFIED DRUG;

ARTICLE; GENE CLUSTER; GENETIC ANALYSIS; GENETIC DISTANCE; GENETIC VARIABILITY; GEOGRAPHY; HUMAN; INDONESIA; MIGRATION; PAPUA NEW GUINEA; PHYLOGENY; PRIORITY JOURNAL;

GENE FREQUENCY; GENETIC VARIATION; GENETICS, POPULATION; GENOTYPE; HUMANS; INDONESIA; PHYLOGENY; RECEPTORS, KIR;

EID: 77956312504     PISSN: 00012815     EISSN: 13990039     Source Type: Journal    
DOI: 10.1111/j.1399-0039.2010.01525.x     Document Type: Article

References (39)

1. Dupont B, Selvakumar A, Steffens U. The killer cell inhibitory receptor genomic region on human chromosome 19q13.4. Tissue Antigens 1997 : 49 : 557 563.
2. Biassoni R, Pessino A, Malaspina A et al. Role of amino acid position 70 in the binding affinity of p50.1 and p58.1 receptors for HLA-Cw4 molecules. Eur J Immunol 1999 : 27 : 3095 3099.
3. Dohring C, Sceidegger D, Samaridis J, Cella M, Colonna M. A human killer inhibitory receptor specific for HLA-A1, 2. J Immunol 1996 : 156 : 3096 3101.
4. Gumperz JE, Litwin V, Phillips JH, Lanier LL, Parham P. The Bw4 epitope of HLA-B molecules confers reactivity with natural killer cell clones that express NKB1, a putative HLA receptor. J Exp Med 1995 : 181 : 1133 1144.
5. Rajagopalan S, Long EO. A human histocompatibility leukocyte antigen (HLA)-G-specific receptor expressed on all natural killer cells. J Exp Med 1999 : 189 : 1093 1100.
6. Vilches C, Parham P. KIR diverse, rapidly evolving receptors of innate and adaptive immunity. Ann Rev Immunol 2002 : 20 : 217 251.
7. Shilling HG, Guethlein LA, Cheng NW et al. Allelic polymorphism synergizes with variable gene content to individualize human KIR gene genotype. J Immunol 2002 : 168 : 2307 2315.
8. Witt CS, Dewing C, Sayer DC, Uhrberg M, Parham P, Christiansen FT. Population frequencies and putative haplotypes of the killer cell immunoglobulin-like receptor sequences and evidence for recombination. Transplantation 1999 : 68 : 1784 1789.
9. Uhrberg M, Valiante NM, Shum BP et al. Human diversity in killer cell inhibitory receptor genes. Immunity 1997 : 7 : 753 763.
10. Uhrberg M. The KIR gene family: life in the fast line of evolution. Eur J Immunol 2005 : 35 : 10 5.
11. Wilson MJ, Torkar M, Haude A et al. Plasticity in the organization and sequences of human KIR/ILT gene family. Proc Natl Acad Sci USA 2000 : 97 : 4778 4783.
12. Kulkarni S, Martin MP, Carrington M. The Yin and Yan of HLA and KIR in human disease. Semin Immunol 2008 : 20 : 343 352.
13. Velickovic M, Velickovic Z, Panigoro R, Dunckley H. Diversity of killer cell immunoglobulin-like receptor genes Indonesian populations of Java, Kalimantan, Timor and Irian Jaya. Tissue Antigens 2009 : 73 : 9 16.
14. Miller LH, Dykes DD, Polesky HF. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acid Res 1988 : 16 : 1215.
15. Gomez-Lozano N, Vilches C. Genotyping of human killer-cell immunoglobulin-like receptor genes by polymerase chain reaction with sequence-specific primers: an update. Tissue Antigens 2002 : 59 : 184 193.
16. Marsh SGE, Parham P, Dupont B et al. Killer-cell immunoglobulin-like receptors (KIR) Nomenclature Report, 2002. Immunogenetics 2003 : 55 : 220 226.
17. Velickovic M, Velickovic Z, Dunckley H. Diversity of killer cell immunoglobulin-like receptor genes in Pacific Islands populations. Immunogenetics 2006 : 58 : 523 532.
18. Hsu KC, Liu XR, Selvakumar A, Mickelson E, O'Reilly RJ, Dupont B. Killer Ig-Like Receptor haplotype analysis by gene content: evidence for genomic diversity with a minimum of six basic framework haplotypes, each with multiple subsets. J Immunol 2002 : 169 : 5118 5129.
19. Felsenstein J. PHYLIP (Phylogeny Inference Package Version 3.6.) Department of Genome Sciences, University of Washington, Seattle. Distributed by the author, 2004.
20. Toneva M, Lepage V, Lafay G et al. Genomic diversity of natural killer cell receptor genes in three populations. Tissue Antigens 2001 : 57 : 358 362.
21. Norman PJ, Stephens HA, Verity DH, Chandanayingyong D, Vaughan RW. Distribution of natural killer cell immunoglobulin-like receptor sequences in three ethnic groups. Immunogenetics 2001 : 52 : 195 205.
22. Norman PJ, Carrington CV, Byng M et al. Natural killer cell immunoglobulin-like receptor (KIR) locus profiles in African and South Asian populations. Genes Immunol 2002 : 3 : 86 95.
23. Rajalingam R, Krausa P, Shilling HG et al. Distinctive KIR and HLA diversity in a panel of North Indian Hindus. Immunogenetics 2002 : 53 : 1009 1019.
24. Yawata M, Yawata N, McQueen KL et al. Predominance of group A KIR haplotypes in Japanese associated with diverse NK cell repertoires of KIR expression. Immunogenetics 2002 : 54 : 543 550.
25. Niokou D, Spyropoulou-Vlachou M, Darlamitsou A, Stravropoulos-Giokas C. Distribution of killer cell immunoglobulin-like receptors in the Greek population. Hum Immunol 2003 : 64 : 1167 1176.
26. Whang DH, Park H, Yoon JA, Park MH. Haplotype analysis of killer cell immunoglobulin-like receptor genes in 77 Korean families. Hum Immunol 2005 : 66 : 146 154.
27. Jiang K, Zhu FM, Lv QF, Yan LX. Distribution of killer cell immunoglobulin-like receptor genes in the Chinese Han population. Tissue Antigens 2005 : 65 : 556 563.
28. Denis L, Sivula J, Gourraud PA et al. Genetic diversity of KIR natural killer cell markers in populations from France, Guadeloupe, Finland, Senegal and Reunion. Tissue Antigens 2005 : 66 : 267 276.
29. Frassati C, Touinssi M, Picard C et al. Distribution of killer-cell immunoglobulin-like receptor (KIR) in Comoros and Southeast France. Tissue Antigens 2006 : 67 : 356 367.
30. Gutierrez-Rodriguez ME, Sandoval-Ramirez L, Diaz-Flores M et al. KIR gene in Ethnic and Mestizo populations from Mexico. Hum Immunol 2006 : 67 : 85 93.
31. Middleton D, Meenagh A, Moscoso J, Arnaiz-Villena A. Killer immunoglobulin receptor gene and allele frequencies in Caucasoid, Oriental and Black populations from different continents. Tissue Antigens 2008 : 71 : 105 113.
32. Flores AC, Marcos CY, Paladino N et al. KIR genes polymorphism in Argetinean Caucasoid and Amerindian populations Tissue Antigens 2007 : 69 : 568 576.
33. Ewerton PD, de Meira Leite M, Magalhaes M, Sena L, Santos EJM. Amazonian Amerindians exhibit high variability of KIR profile. Immunogenetics 2007 : 59 : 625 630.
34. Rajalingam R, Du Z, Meenagh A et al. Distinct diversity of KIR genes in three southern Indian populations: comparison with world populations revealed a link between KIR gene content and pre-historic human migration. Immunogenetics 2008 : 60 : 207 217.
35. Bellwood P. Prehistory of the Indo-Malaysian Archipelago. Sydney : Academic Press, 1985.
36. Bellwood P. Austronesian prehistory in Southeast Asia: homeland, expansion and transformation. In: Bellwood P, Fox JJ, Tryon D, eds. The Austronesians: Historical and Comparative Perspectives. Canberra. Australia : ANU, 1995.
37. Turner CG II. Late Pleistocene and Holocene population history of East Asia based on dental variation. Am J Phys Anthropol 1987 : 73 : 305 321.
38. Tommaseo-Ponzetta M, Attimonelli M, De Robertis M, Tanzariello F, Saccone C. Mitochondrial DNA variability of West New Guinea populations. Am J Phys Anthropol 2002 : 117 : 49 67.
39. Redd AJ, Tekezaki N, Sherry ST, McGarvey ST, Sofro ASM, Stoneking M. Evolutionary history of the COII/tRNA-lys intragenic 9 base pair deletion in human mitochondrial DNAs from the Pacific. Mol Biol Evol 1995 : 12 : 604 615.