Diversity of killer cell immunoglobulin-like receptor genes in Indonesian populations of Java, Kalimantan, Timor and Irian Jaya

Tissue Antigens

Volumn 73, Issue 1, 2009, Pages 9-16

  Velickovic, M ^a,b   Velickovic, Z ^a,b   Panigoro, R ^c   Dunckley, H ^a,b  

^a AUSTRALIAN RED CROSS BLOOD SERVICE   (Australia)

^b University of Sydney   (Australia)

^c PADJADJARAN UNIVERSITY   (Indonesia)

Author keywords

Indonesia; Killer cell immunoglobulin like receptor; Killer cell immunoglobulin like receptor genotypes

Indexed keywords

KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DL1; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DL2; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DL3; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DL4; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DL5; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DP1; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DS2; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DS3; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DS4; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DS5; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 3DL1; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 3DL2; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 3DL3; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 3DP1; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 3DS1; UNCLASSIFIED DRUG;

ARTICLE; CONTROLLED STUDY; DNA POLYMORPHISM; GENE FREQUENCY; GENETIC VARIABILITY; GENOTYPE; HUMAN; HUMAN EXPERIMENT; INDONESIA; MOLECULAR PHYLOGENY; NORMAL HUMAN; PAPUA NEW GUINEA; PRIORITY JOURNAL; PSEUDOGENE; TIMOR-LESTE;

ETHNIC GROUPS; GENE FREQUENCY; GENOTYPE; HUMANS; INDONESIA; POLYMORPHISM, GENETIC; PSEUDOGENES; RECEPTORS, KIR;

EID: 58149138816     PISSN: 00012815     EISSN: 13990039     Source Type: Journal    
DOI: 10.1111/j.1399-0039.2008.01149.x     Document Type: Article

References (47)

1. Dupont B, Selvakumar A, Steffens. U. The killer cell inhibitory receptor genomic region on human chromosome 19q13.4. Tissue Antigens 1997 : 49 : 557 63.
2. Martin AM, Freitas EM, Witt CS, Christiansen FT. The genomic organization and evolution of the natural killer immunoglobulin-like receptor (KIR) gene cluster. Immunogenetics 2000 : 51 : 268 80.
3. Vilches C, Parham P. KIR diverse, rapidly evolving receptors of innate and adaptive immunity. Annu Rev Immunol 2002 : 20 : 217 51.
4. Wilson MJ, Torkar M, Trowsdale J. Genomic organization of a human killer cell inhibitory receptor gene. Tissue Antigens 1997 : 49 : 574 9.
5. Long EO. Regulation of immune responses through inhibitory receptors. Annu Rev Immunol 1999 : 17 : 875 904.
6. Selvakumar A, Steffens U, Dupont B. NK cell receptor gene of the KIR family with two Ig domains but highest homology to KIR receptors with three domains. Tissue Antigens 1996 : 48 : 285 94.
7. Biassoni R, Pessino A, Malaspina A et al. Role of amino acid position 70 in the binding affinity of p50.1 and p58.1 receptors for HLA-Cw4 molecules. Eur J Immunol 1999 : 27 : 3095 9.
8. Dohring C, Sceidegger D, Samaridis J, Cella M, Colonna M. A human killer inhibitory receptor specific for HLA-A1, 2. J Immunol 1996 : 156 : 3096 101.
9. Gumperz JE, Litwin V, Phillips JH, Lanier LL, Parham P. The Bw4 epitope of HLA-B molecules confers reactivity with natural killer cell clones that express NKB1, a putative HLA receptor. J Exp Med 1995 : 181 : 1133 44.
10. Rajagopalan S, Long EO. A human histocompatibility leukocyte antigen (HLA)-G-specific receptor expressed on all natural killer cells. J Exp Med 1999 : 189 : 1093 100.
11. Hsu KC, Liu XR, Selvakumar A, Mickelson E, O'Reilly RJ, Dupont B. Killer Ig-Like Receptor haplotype analysis by gene content: evidence for genomic diversity with a minimum of six basic framework haplotypes, each with multiple subsets. J Immunol 2002 : 169 : 5118 29.
12. Shilling HG, Guethlein LA, Cheng NW et al. Allelic polymorphism synergizes with variable gene content to individualize human KIR gene genotype. J Immunol 2002 : 168 : 2307 15.
13. Witt CS, Dewing C, Sayer DC, Uhrberg M, Parham P, Christiansen FT. Population frequencies and putative haplotypes of the killer cell immunoglobulin-like receptor sequences and evidence for recombination. Transplantation 1999 : 68 : 1784 9.
14. Uhrberg M, Valiante NM, Shum BP et al. Human diversity in killer cell inhibitory receptor genes. Immunity 1997 : 7 : 753 63.
15. Uhrberg M. The KIR gene family: life in the fast line of evolution. Eur J Immunol 2005 : 35 : 10 5.
16. Wilson MJ, Torkar M, Haude A et al. Plasticity in the organization and sequences of human KIR/ILT gene family. Proc Natl Acad Sci U S A 2000 : 97 : 4778 83.
17. Uhrberg M, Parham P, Wernet P. Definition of gene content for nine common group B haplotypes of the Caucasoid population: KIR haplotypes contain between seven and eleven KIR genes. Immunogenetics 2002 : 54 : 221 9.
18. Toneva M, Lepage V, Lafay G et al. Genomic diversity of natural killer cell receptor genes in three populations. Tissue Antigens 2001 : 57 : 358 62.
19. Norman PJ, Stephens HA, Verity DH, Chandanayingyong D, Vaughan RW. Distribution of natural killer cell immunoglobulin-like receptor sequences in three ethnic groups. Immunogenetics 2001 : 52 : 195 205.
20. Norman PJ, Carrington CV, Byng M et al. Natural killer cell immunoglobulin-like receptor (KIR) locus profiles in African and South Asian populations. Genes Immun 2002 : 3 : 86 95.
21. Rajalingam R, Krausa P, Shilling HG et al. Distinctive KIR and HLA diversity in a panel of North Indian Hindus. Immunogenetics 2002 : 53 : 1009 19.
22. Yawata M, Yawata N, McQueen KL et al. Predominance of group A KIR haplotypes in Japanese associated with diverse NK cell repertoires of KIR expression. Immunogenetics 2002 : 54 : 543 50.
23. Niokou D, Spyropoulou-Vlachou M, Darlamitsou A, Stravropoulos-Giokas C. Distribution of killer cell immunoglobulin-like receptors in the Greek population. Hum Immunol 2003 : 64 : 1167 76.
24. Whang DH, Park H, Yoon JA, Park MH. Haplotype analysis of killer cell immunoglobulin-like receptor genes in 77 Korean families. Hum Immunol 2005 : 66 : 146 54.
25. Jiang K, Zhu FM, Lv QF, Yan LX. Distribution of killer cell immunoglobulin-like receptor genes in the Chinese Han population. Tissue Antigens 2005 : 65 : 556 63.
26. Denis L, Sivula J, Gourraud PA et al. Genetic diversity of KIR natural killer cell markers in populations from France, Guadeloupe, Finland, Senegal and Reunion. Tissue Antigens 2005 : 66 : 267 76.
27. Frassati C, Touinssi M, Picard C et al. Distribution of killer-cell immunoglobulin-like receptor (KIR) in Comoros and Southeast France. Tissue Antigens 2006 : 67 : 356 67.
28. Gutierrez-Rodriguez ME, Sandoval-Ramirez L, Diaz-Flores M et al. KIR gene in ethnic and Mestizo populations from Mexico. Hum Immunol 2006 : 67 : 85 93.
29. Luszczek W, Majorczyk E, Nowak I et al. Inhibitory and activatory KIR gene frequencies in the Polish population. Int J Immunogenet 2006 : 33 : 167 70.
30. Gendzekhadze K, Norman PJ, Abi-rached L, Layrisse Z, Parham P. High KIR diversity in Amerindians is maintained using few gene-content haplotypes. Immunogenetics 2006 : 58 : 474 80.
31. Velickovic M, Velickovic Z, Dunckley H. Diversity of killer cell immunoglobulin-like receptor genes in Pacific Islands populations. Immunogenetics 2006 : 58 : 523 32.
32. Mahfouz R, Rayes R, Mahfoud Z, Bazarbachi A, Zaatari G. Distribution of killer cell immunoglobulin-like receptors genotypes in the Lebanese population. Tissue Antigens 2006 : 68 : 66 71.
33. Yawata M, Yawata N, Draghi M, Little AM, Parhenion F, Parham P. Roles for HLA and KIR polymorphisms in natural killer cell repertoire selections and modulation of effector function. J Exp Med 2006 : 203 : 633 45.
34. Du Z, Gjertson DW, Reed EF, Rajalingam R. Receptor-ligand analysis define minimal killer cell Ig-like receptor (KIR) in humans. Immunogenetics 2007 : 59 : 1 15.
35. Carrington M, Martin MP. The impact of variation at the KIR gene cluster on human disease. Curr Top Microbiol Immunol 2006 : 298 : 225 57.
36. Miller LH, Dykes DD, Polesky HF. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 1988 : 16 : 1215.
37. Gomez-Lozano N, Vilches C. Genotyping of human killer-cell immunoglobulin-like receptor genes by polymerase chain reaction with sequence-specific primers: an update. Tissue Antigens 2002 : 59 : 184 93.
38. Marsh SGE, Parham P, Dupont B et al. Killer-cell immunoglobulin-like receptors (KIR) Nomenclature Report, 2002. Immunogenetics 2003 : 55 : 220 6.
39. Felsenstein J. PHYLIP Phylogeny Inference Package, version 3.6. Seattle : Department of Genome Sciences, University of Washington. Distributed by the author. 2004.
40. Rajalingam R, Du Z, Meenagh A, Luo L et al. Distinct diversity of KIR genes in three southern Indian populations: comparison with world populations revealed a link between KIR gene content and pre-historic human migrations. Immunogenetics 2008 : 60 : 207 17.
41. Bellwood P. Prehistory of the Indo-Malaysian Archipelago. Sydney : Academic Press, 1985.
42. Bellwood P. Austronesian prehistory in Southeast Asia: homeland, expansion and transformation. In : Bellwood P, Fox JJ, Tryon D, eds. The Austronesians: Historical and Comparative Perspectives. Canberra : ANU, 1995, p. 103 14.
43. Hill C, Soares P, Mormina M, Macaulay V et al. A mitochondrial stratigraphy for island South Asia. Am J Hum Genet 2007 : 80 : 29 43.
44. Groube L, Chappell J, Muke J, Price D. A 40 000 year old human occupation site on Huan Peninsula, Papua New Guinea. Nature 1986 : 324 : 453 5.
45. Ingman M, Gyllensten U. Mitochondrial genome variation and evolutionary history of Australian and New Guinean aborigines. Genome Res 2003 : 13 : 1600 6.
46. Tommaseo-Ponzetta M, Attimonelli M, De Robertis M, Tanzariello F, Saccone C. Mitochondrial DNA variability of West New Guinea populations. Am J Phys Anthropol 2002 : 117 : 49 67.
47. Redd AJ, Tekezaki N, Sherry ST, McGarvey ST, Sofro ASM, Stoneking M. Evolutionary history of the COII/tRNA-lys intragenic 9 base pair deletion in human mitochondrial DNAs from the Pacific. Mol Biol Evol 1995 : 12 : 604 15.