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Volumn 5, Issue 4, 2010, Pages

CO I barcoding reveals new clades and radiation patterns of indo-pacific sponges of the family irciniidae (Demospongiae: Dictyoceratida)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CLADISTICS; COELENTERATE; CONTROLLED STUDY; DNA BARCODING; GENE AMPLIFICATION; GENETIC VARIABILITY; GEOMORPHOLOGY; HAPLOTYPE; INTRASPECIFIC VARIATION; IRCINIA SPICULOSA; IRCINIIDAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PSAMMOCINIA; SPONGE (PORIFERA); TAXONOMY; ANIMAL; EVOLUTION; GENETIC MARKER; GENETICS; INFORMATION PROCESSING; METHODOLOGY; SEA;

EID: 77956305333     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0009950     Document Type: Article
Times cited : (61)

References (45)
  • 1
    • 0034142130 scopus 로고    scopus 로고
    • Highlights of marine natural products chemistry (1972-1999)
    • Faulkner DJ (2000) Highlights of marine natural products chemistry (1972- 1999). Natural Product Reports 17: 1-6.
    • (2000) Natural Product Reports , vol.17 , pp. 1-6
    • Faulkner, D.J.1
  • 2
    • 0031444832 scopus 로고    scopus 로고
    • Polyphyly of "sclerosponges" (Porifera, Demospongiae) supported by 28S ribosomal sequences
    • Chombard C, Boury-Esnault N, Tillier A, Vacelet J (1997) Polyphyly of "sclerosponges" (Porifera, Demospongiae) supported by 28S ribosomal sequences. Biological Bulletin 193: 359-367.
    • (1997) Biological Bulletin , vol.193 , pp. 359-367
    • Chombard, C.1    Boury-Esnault, N.2    Tillier, A.3    Vacelet, J.4
  • 3
    • 0141916597 scopus 로고
    • Structural characters and their use in sponge taxonomy: When is a sigma not a sigma?
    • In: Rützler K, ed., Washington D.C.: Smithonian Institution Press
    • Fromont J, Bergquist PR (1990) Structural characters and their use in sponge taxonomy: When is a sigma not a sigma? In: Rützler K, ed. New perspectives in Sponge Biology. Washington D.C.: Smithonian Institution Press. pp 273-278.
    • (1990) New Perspectives in Sponge Biology , pp. 273-278
    • Fromont, J.1    Bergquist, P.R.2
  • 4
    • 0035684933 scopus 로고    scopus 로고
    • Marine biodiversity and the need for systematic inventory
    • Mikkelsen P, Cracraft J (2001) Marine biodiversity and the need for systematic inventory. Bulletin of Marine Science 69: 525-534.
    • (2001) Bulletin of Marine Science , vol.69 , pp. 525-534
    • Mikkelsen, P.1    Cracraft, J.2
  • 5
    • 0027332730 scopus 로고
    • Sibling Species in the Sea
    • Knowlton N (1993) Sibling Species in the Sea. Annu Rev Ecol Syst. pp 189-216.
    • (1993) Annu Rev Ecol Syst , pp. 189-216
    • Knowlton, N.1
  • 6
    • 0342493320 scopus 로고    scopus 로고
    • In: Hooper JNA, ed. Memoirs of the Queensland Museum, Proceedings of the 5th International Sponge Symposium, Brisbane, June-July
    • Solè-Cava AM, Boury-Esnault N (1999) Patterns of intra and interspecific genetic divergence in marine sponges. In: Hooper JNA, ed. Memoirs of the Queensland Museum, Proceedings of the 5th International Sponge Symposium, Brisbane, June-July 1998. pp 591-602.
    • (1998) Patterns of intra and interspecific genetic divergence in marine sponges , pp. 591-602
  • 7
    • 0033503860 scopus 로고    scopus 로고
    • Calcarea from the Great Barriea Reef. 1: Cryptic Calcinea from Heron Island and Wistari Reef (Capricorn-Bunker Group)
    • Wörheide G, Hooper JNA(1999) Calcarea from the Great Barriea Reef. 1: Cryptic Calcinea from Heron Island and Wistari Reef (Capricorn-Bunker Group). Memoirs of the Queensland Museum 43: 859-891.
    • (1999) Memoirs of The Queensland Museum , vol.43 , pp. 859-891
    • Wörheide, G.1    Hooper, J.N.A.2
  • 8
    • 34548526040 scopus 로고    scopus 로고
    • Cryptic speciation in marine sponges evidenced by mitochondrial and nuclear genes: A phylogenetic approach
    • Blanquer A, Uriz MJ (2007) Cryptic speciation in marine sponges evidenced by mitochondrial and nuclear genes: A phylogenetic approach. Molecular Phylogenetics and Evolution 45: 392-397.
    • (2007) Molecular Phylogenetics and Evolution , vol.45 , pp. 392-397
    • Blanquer, A.1    Uriz, M.J.2
  • 9
    • 3843130756 scopus 로고    scopus 로고
    • Order Dictyoceratida Minchin, 1900
    • In: Hooper JNA, Soest RWM van, eds. New York, Boston, Dordrecht, London, Moscow: Kluwer Academic/Plenum Publishers
    • Cook SdC, Bergquist PR (2002) Order Dictyoceratida Minchin, 1900. In: Hooper JNA, Soest RWM van, eds. Systema Porifera A guide to the classification of sponges. New York, Boston, Dordrecht, London, Moscow: Kluwer Academic/Plenum Publishers. 1021 p.
    • (2002) Systema Porifera a Guide to The Classification of Sponges , pp. 1021
    • Cook, S.1    Bergquist, P.R.2
  • 10
    • 77956320771 scopus 로고    scopus 로고
    • Order Dendroceratida Minchin, 1900
    • In: Hooper JNA, Soest RWM van, eds., New York, Boston, Dordrecht, London, Moscow: Kluwer Academic/Plenum Publishers
    • Bergquist PR, Cook SdC (2002) Order Dendroceratida Minchin, 1900. In: Hooper JNA, Soest RWM van, eds. Systema Porifera A guide to the classification of sponges. New York, Boston, Dordrecht, London, Moscow: Kluwer Academic/Plenum Publishers. 1067 p.
    • (2002) Systema Porifera a Guide to The Classification of Sponges , pp. 1067
    • Bergquist, P.R.1    Cook, S.2
  • 13
    • 0032411401 scopus 로고    scopus 로고
    • Revision of the genus Psammocinia (Porifera: Demospongiae: Dictyoceratida), with six new species from New Zealand
    • Cook SDC, Bergquist PR (1998) Revision of the genus Psammocinia (Porifera: Demospongiae: Dictyoceratida), with six new species from New Zealand. New Zealand Journal of Marine and Freshwater Research 32: 399-426.
    • (1998) New Zealand Journal of Marine and Freshwater Research , vol.32 , pp. 399-426
    • Cook, S.D.C.1    Bergquist, P.R.2
  • 14
    • 34047181806 scopus 로고    scopus 로고
    • Family Irciniidae Gray, 1867
    • In: Hooper JNA, Soest RWM van, eds. New York, Boston, Dordrecht, London, Moscow: Kluwer Academic/Plenum Publishers
    • Cook SdC, Bergquist PR (2002) Family Irciniidae Gray, 1867. In: Hooper JNA, Soest RWM van, eds. Systema Porifera A guide to the classification of sponges. New York, Boston, Dordrecht, London, Moscow: Kluwer Academic/Plenum Publishers. pp 1022-1027.
    • (2002) Systema Porifera a Guide to The Classification of Sponges , pp. 1022-1027
    • Cook, S.1    Bergquist, P.R.2
  • 16
    • 33747083455 scopus 로고    scopus 로고
    • DNA barcoding reveals extraordinary cryptic diversity in an amphipod genus: Implications for desert spring conservation
    • Witt JDS, Threloff DL, Hebert PDN (2006) DNA barcoding reveals extraordinary cryptic diversity in an amphipod genus: implications for desert spring conservation. Mol Ecol 15: 3073-3082.
    • (2006) Mol Ecol , vol.15 , pp. 3073-3082
    • Witt, J.D.S.1    Threloff, D.L.2    Hebert, P.D.N.3
  • 17
    • 71049114552 scopus 로고    scopus 로고
    • The Sponge Barcoding Project - aiding in the identification and description of poriferan taxa
    • In: Custódio MR, Lôbo-Hajdu G, Hajdu E, Muricy G, eds., Rio de Janeiro: Museu Nacional de Rio de Janiero Book Series
    • Wörheide G, Erpenbeck D, Menke C (2008) The Sponge Barcoding Project - aiding in the identification and description of poriferan taxa. In: Custódio MR, Lôbo-Hajdu G, Hajdu E, Muricy G, eds. Porifera Research: Biodiversity, Innovation & Sustainability. Rio de Janeiro: Museu Nacional de Rio de Janiero Book Series. pp 123-128.
    • (2008) Porifera Research: Biodiversity, Innovation & Sustainability , pp. 123-128
    • Wörheide, G.1    Erpenbeck, D.2    Menke, C.3
  • 19
    • 0036897723 scopus 로고    scopus 로고
    • Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria)
    • Shearer TL, Van Oppen MJH, Romano SL, Wörheide G (2002) Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Molecular Ecology 11: 2475-2487.
    • (2002) Molecular Ecology , vol.11 , pp. 2475-2487
    • Shearer, T.L.1    van Oppen, M.J.H.2    Romano, S.L.3
  • 20
    • 40949140505 scopus 로고    scopus 로고
    • Slow mitochondrial COI sequence evolution at the base of the metazoan tree and its implications for DNA barcoding
    • Huang D, Meier R, Todd PA, Chou LM (2008) Slow mitochondrial COI sequence evolution at the base of the metazoan tree and its implications for DNA barcoding. J Mol Evol 66: 167-174.
    • (2008) J Mol Evol , vol.66 , pp. 167-174
    • Huang, D.1    Meier, R.2    Todd, P.A.3    Chou, L.M.4
  • 21
    • 0042265921 scopus 로고
    • Ecology and distribution of two sympatric, closely relates sponge species, Halichondria panicea (Pallas, 1766) and H. bowerbanki Burton, 1930 (Porifera, Demospongiae), with remarks on their speciation
    • Vethaak AD, Chronie RJA, Soest RWM van (1982) Ecology and distribution of two sympatric, closely relates sponge species, Halichondria panicea (Pallas, 1766) and H. bowerbanki Burton, 1930 (Porifera, Demospongiae), with remarks on their speciation. Bijdragen tot de Dierkunde 52: 82-102.
    • (1982) Bijdragen Tot De Dierkunde , vol.52 , pp. 82-102
    • Vethaak, A.D.1    Chronie, R.J.A.2    van Soest, R.W.M.3
  • 22
    • 36749009048 scopus 로고    scopus 로고
    • Mitochondrial Cytochrome oxidase 1 phylogeny supports alternative taxonomic scheme for the marine Haplosclerida
    • Raleigh J, Redmond NE, Delahan E, Torpey S, Van Soest RWM, et al. (2007) Mitochondrial Cytochrome oxidase 1 phylogeny supports alternative taxonomic scheme for the marine Haplosclerida. J Mar Biol Assoc Uk 87: 1577-1584.
    • (2007) J Mar Biol Assoc Uk , vol.87 , pp. 1577-1584
    • Raleigh, J.1    Redmond, N.E.2    Delahan, E.3    Torpey, S.4    van Soest, R.W.M.5
  • 23
    • 0035109318 scopus 로고    scopus 로고
    • Molecular evidence for cryptic species of Aurelia aurita (Cnidaria, Scyphozoa)
    • Dawson MN, Jacobs DK (2001) Molecular evidence for cryptic species of Aurelia aurita (Cnidaria, Scyphozoa). Biol Bull-Us. pp 92-96.
    • (2001) Biol Bull-Us , pp. 92-96
    • Dawson, M.N.1    Jacobs, D.K.2
  • 24
    • 11144276496 scopus 로고    scopus 로고
    • Global phylogeography of Cassiopea (Scyphozoa: Rhizostomeae): Molecular evidence for cryptic species and multiple invasions of the Hawaiian Islands
    • Holland BS, Dawson MN, Crow GL, Hofmann DK (2004) Global phylogeography of Cassiopea (Scyphozoa: Rhizostomeae): molecular evidence for cryptic species and multiple invasions of the Hawaiian Islands. Mar Biol. Pp 1119-1128.
    • (2004) Mar Biol , pp. 1119-1128
    • Holland, B.S.1    Dawson, M.N.2    Crow, G.L.3    Hofmann, D.K.4
  • 25
    • 4344656120 scopus 로고    scopus 로고
    • Fine scale endemism on coral reefs: Archipelagic differentiation in turbinid gastropods
    • Meyer CP, Geller JB, Paulay G (2005) Fine scale endemism on coral reefs: Archipelagic differentiation in turbinid gastropods. Evolution 59: 113-125.
    • (2005) Evolution , vol.59 , pp. 113-125
    • Meyer, C.P.1    Geller, J.B.2    Paulay, G.3
  • 26
    • 34948895195 scopus 로고    scopus 로고
    • Phylogeny of the genus Tethya (Tethyidae: Hadromerida: Porifera): Molecular and morphological aspects
    • Heim I, Nickel M, Brümmer F (2007) Phylogeny of the genus Tethya (Tethyidae: Hadromerida: Porifera): molecular and morphological aspects. J Mar Biol Ass 87: 14.
    • (2007) J Mar Biol Ass , vol.87 , pp. 14
    • Heim, I.1    Nickel, M.2
  • 27
    • 34248189677 scopus 로고    scopus 로고
    • Identification of genes suitable for DNA barcoding of morphologically indistinguishable Korean Halichondriidae sponges
    • Park MH, Sim CJ, Baek J, Min GS (2007) Identification of genes suitable for DNA barcoding of morphologically indistinguishable Korean Halichondriidae sponges. Molecules and Cells 23: 220-227.
    • (2007) Molecules and Cells , vol.23 , pp. 220-227
    • Park, M.H.1    Sim, C.J.2    Baek, J.3    Min, G.S.4
  • 28
    • 7444222362 scopus 로고    scopus 로고
    • Intragenomic variation of the rDNA internal transcribed spacers in sponges (Phylum Porifera): Implications for phylogenetic studies
    • Wörheide G, Nichols SA, Goldberg J (2004) Intragenomic variation of the rDNA internal transcribed spacers in sponges (Phylum Porifera): implications for phylogenetic studies. Molecular Phylogenetics and Evolution 33: 816-830.
    • (2004) Molecular Phylogenetics and Evolution , vol.33 , pp. 816-830
    • Wörheide, G.1    Nichols, S.A.2    Goldberg, J.3
  • 29
    • 33646891565 scopus 로고    scopus 로고
    • CO1 phylogenies in diploblasts and the 'Barcoding of Life' - are we sequencing a suboptimal partition?
    • Erpenbeck D, Hooper JNA, Wörheide G (2006) CO1 phylogenies in diploblasts and the 'Barcoding of Life' - are we sequencing a suboptimal partition? Molecular Ecology Notes 6: 550-553.
    • (2006) Molecular Ecology Notes , vol.6 , pp. 550-553
    • Erpenbeck, D.1    Hooper, J.N.A.2    Wörheide, G.3
  • 30
    • 77956323596 scopus 로고    scopus 로고
    • Genetic structure of the Caribbean giant barrel sponge Xestospongia muta using the I3-M11 partition of COI
    • López-Legentil S, Pawlik J(2008) Genetic structure of the Caribbean giant barrel sponge Xestospongia muta using the I3-M11 partition of COI. Coral Reefs. pp 9.
    • (2008) Coral Reefs , pp. 9
    • López-Legentil, S.1    Pawlik, J.2
  • 31
    • 30644477617 scopus 로고    scopus 로고
    • Deep-sea "lithistid" assemblages from the Norfolk Ridge (New Caledonia), with description of seven new species and a new genus (Porifera, Demospongiae)
    • Schlacher-Hoenlinger MA, Pisera A, Hooper JNA (2005) Deep-sea "lithistid" assemblages from the Norfolk Ridge (New Caledonia), with description of seven new species and a new genus (Porifera, Demospongiae). Zoosystema 27: 649-698.
    • (2005) Zoosystema , vol.27 , pp. 649-698
    • Schlacher-Hoenlinger, M.A.1    Pisera, A.2    Hooper, J.N.A.3
  • 32
    • 0028800395 scopus 로고
    • Bioactive prenylhydroquinone sulfates and a novel C-31 furanoterpene alcohol sulfate from the marine sponge, Ircinia sp
    • Bifulco G, Bruno I, Minale L, Riccio R, Debitus C, et al. (1995) Bioactive prenylhydroquinone sulfates and a novel C-31 furanoterpene alcohol sulfate from the marine sponge, Ircinia sp. J Nat Products 58: 1444-1449.
    • (1995) J Nat Products , vol.58 , pp. 1444-1449
    • Bifulco, G.1    Bruno, I.2    Minale, L.3    Riccio, R.4    Debitus, C.5
  • 33
    • 24344490168 scopus 로고    scopus 로고
    • A molecular phylogeny and historical biogeography of the marine sponge genus Placospongia (Phylum Porifera) indicate low dispersal capabilities and widespread crypsis
    • Nichols SA, Barnes PAG (2005) A molecular phylogeny and historical biogeography of the marine sponge genus Placospongia (Phylum Porifera) indicate low dispersal capabilities and widespread crypsis. Journal of Experimental Marine Biology and Ecology 323: 1-15.
    • (2005) Journal of Experimental Marine Biology and Ecology , vol.323 , pp. 1-15
    • Nichols, S.A.1    Barnes, P.A.G.2
  • 34
    • 1342304940 scopus 로고    scopus 로고
    • Low levels of genetic variation in mtDNA sequences over the western Mediterranean and Atlantic range of the sponge Crambe crambe (Poecilosclerida)
    • Duran S, Pascual M, Turon X (2004) Low levels of genetic variation in mtDNA sequences over the western Mediterranean and Atlantic range of the sponge Crambe crambe (Poecilosclerida). Marine Biology 144: 31-35.
    • (2004) Marine Biology , vol.144 , pp. 31-35
    • Duran, S.1    Pascual, M.2    Turon, X.3
  • 35
    • 33344477602 scopus 로고    scopus 로고
    • Low variation in partial cytochrome oxidase subunit I (COI) mitochondrial sequences in the coralline demosponge Astrosclera willeyana across the Indo-Pacific
    • Wörheide G(2006) Low variation in partial cytochrome oxidase subunit I (COI) mitochondrial sequences in the coralline demosponge Astrosclera willeyana across the Indo-Pacific. Marine Biology 148: 907-912.
    • (2006) Marine Biology , vol.148 , pp. 907-912
    • Wörheide, G.1
  • 36
    • 0032739189 scopus 로고    scopus 로고
    • Does cosmopolitanism result from overconservative systematics? A case study using the marine sponge Chondrilla nucula
    • Klautau M, Russo CAM, Lazoski C, Boury-Esnault N, Thorpe JP, et al. (1999) Does cosmopolitanism result from overconservative systematics? A case study using the marine sponge Chondrilla nucula. Evolution 53: 1414-1422.
    • (1999) Evolution , vol.53 , pp. 1414-1422
    • Klautau, M.1    Russo, C.A.M.2    Lazoski, C.3    Boury-Esnault, N.4    Thorpe, J.P.5
  • 37
    • 0037625296 scopus 로고    scopus 로고
    • Habitat preference and the marinespeciation paradox
    • Bierne N, Bonhomme F, David P (2003) Habitat preference and the marinespeciation paradox. P Roy Soc B-Biol Sci. pp 1399-1406.
    • (2003) P Roy Soc B-Biol Sci , pp. 1399-1406
    • Bierne, N.1    Bonhomme, F.2    David, P.3
  • 38
    • 0030808759 scopus 로고    scopus 로고
    • Speciation and population genetic structure in tropical Pacific Sea urchins
    • Palumbi SR, Grabowsky G, Duda T, Geyer L, Tachino N (1997) Speciation and population genetic structure in tropical Pacific Sea urchins. Evolution 51: 1506-1517.
    • (1997) Evolution , vol.51 , pp. 1506-1517
    • Palumbi, S.R.1    Grabowsky, G.2    Duda, T.3    Geyer, L.4    Tachino, N.5
  • 41
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
    • Galtier N, Gouy M, Gautier C (1996) SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny. Computer Applications in the Bioscience 12: 543-548.
    • (1996) Computer Applications in the Bioscience , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 42
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797.
    • (2004) Nucleic Acids Research , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 44
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. BIOINFORMATICS 19: 1572-1574.
    • (2003) BIOINFORMATICS , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 45
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2


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