A molecular phylogeny and historical biogeography of the marine sponge genus Placospongia (Phylum Porifera) indicate low dispersal capabilities and widespread crypsis

Journal of Experimental Marine Biology and Ecology

Volumn 323, Issue 1, 2005, Pages 1-15

  Nichols, Scott A ^a   Barnes, Penelope A G ^b,c  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b SMITHSONIAN TROPICAL RESEARCH INSTITUTE   (Panama)

^c VANCOUVER ISLAND UNIVERSITY   (Canada)

Author keywords

Biogeography; Cosmopolitanism; Crypsis; Dispersal; Phylogeny; Porifera

Indexed keywords

BIOGEOGRAPHY; CRYPSIS; DISPERSAL; MOLECULAR ANALYSIS; PHYLOGENY; SPONGE;

PLACOSPONGIA; PORIFERA;

EID: 24344490168     PISSN: 00220981     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jembe.2005.02.012     Document Type: Article

References (47)

1. I. Alvarez, and J.F. Wendel Ribosomal ITS sequences and plant phylogenetic inference Mol. Phylogenet. Evol. 29 2003 417 434
2. J.J. Bell, and D.K.A. Barnes Modelling sponge species diversity using a morphological predictor: a tropical test of a temperate model J. Nat. Conserv. 10 2002 41 50
3. N. Boury-Esnault, A.M. Sole-Cava, and J.P. Thorpe Genetic and cytological divergence between colour morphs of the Mediterranean sponge Oscarella lobularis Schmidt (Porifera, Demospongiae, Oscarellidae) J. Nat. Hist. 26 1992 271 284
4. N. Boury-Esnault, M. Klautau, C. Bezac, J. Wulff, and A.M. Sole-Cava Comparative study of putative conspecific sponge populations from both sides of the Isthmus of Panama J. Mar. Biol. Assoc. U.K. 79 1999 39 50
5. J. Castresana Selection of conserved blocks from multiple alignments for their use in phylogenetic analyses Mol. Biol. Evol. 17 2000 540 552
6. A.G. Coates, and J.A. Obando The geologic evolution of the Central American Isthmus J.B.C. Jackson A.F. Budd A.G. Coates Evolution and Environment in Tropical America 1996 University of Chicago Press Chicago 21 56
7. L.S. Collins Environmental changes in Caribbean shallow waters relative to the closing tropical American sea-way J.B.C. Jackson A.F. Budd A.G. Coates Evolution and Environment in Tropical America 1996 University of Chicago Press Chicago 130 167
8. M.H. Dick, A. Herrera-Cubilla, and J.B.C. Jackson Molecular phylogeny and phylogeography of free-living Bryozoa (Cupuladriidae) from both sides of the Isthmus of Panama Mol. Phylogenet. Evol. 27 2003 355 371
9. H. Duque-Caro The choco block in the northwestern corner of South America: structural, tectonostratigraphic, and paleogeographic implications J. S. Am. Earth Sci. 3 1990 71 84
10. H. Duque-Caro Neogene stratigraphy, palaeoceanography, and palaeobiology in northwest South America and the evolution of the Panama seaway Palaeogeogr. Palaeoclimatol. Palaeoecol. 777 1990 203 234
11. S. Duran, M. Pascual, and X. Turon Low levels of genetic variation in mtDNA sequences over the western Mediterranean and Atlantic range of the sponge Crambe Crambe (Poecilosclerida) Mar. Biol. 144 2004 31 35
12. D. Erpenbeck, J.A.J. Breeuwer, H.C. van der Velde, and R.W.M. van Soest Unravelling host and symbiont phylogenies of halichondrid sponges (Demospongiae, Porifera) using a mitochondrial marker Mar. Biol. 141 2002 377 386
13. D.J. Harris, and K.A. Crandall Intragenomic variation within ITS1 and ITS2 of freshwater crayfishes (Decapoda: Cambaridae): implications for phylogenetic and microsatellite studies Mol. Biol. Evol. 17 2000 284 291
14. Huelsenbeck, J.P., Ronquist, R., 2001. MrBayes: Bayesian Inference of Phylogeny. Version 2.01. Distributed by the author, Department of Biology, University of Rochester.
15. S.N. Jarmon, R.D. Ward, and N.G. Elliot Oligonucleotide primers for PCR amplification of coelomate introns Mar. Biotechnol. 4 2002 347 355
16. L.D. Keigwin Isotopic palaeoceanography of the Caribbean and east Pacific: role of Panama uplift in late Neogene time Science 217 1982 350 352
17. B.P. Kinlan, and S.D. Gaines Propagule dispersal in marine and terrestrial environments: a community perspective Ecology 84 2003 2007 2020
18. R.F.Z.S. Kirkpatrick Descriptions of South African sponges, part II Mar. Invest. South Afr. 2 1904 171 180
19. M. Klautau, A.M. Sole-Cava, and R. Borojevic Biochemical systematics of sibling sympatric species of Clathrina (Porifera: Calcarea) Biochem. Syst. Ecol. 22 1994 367 375
20. M. Klautau, R.A.M. Russo, C. Lazoski, N. Boury-Esnault, J.P. Thorpe, and A.M. Sole-Cava Does cosmopolitanism result from overconservative systematics? A case study using the marine sponge Chondrilla nucula Evolution 53 1999 1414 1422
21. C. Lazoski, A.M. Sole-Cava, N. Boury-Esnault, M. Klautau, and C.A.M. Russo Cryptic speciation in a high gene flow scenario in the oviparous marine sponge Chondrosia reniformis Mar. Biol. 139 2001 421 429
22. N. Lindquist, R. Bolser, and K. Laing Timing of larval release by two Caribbean demosponges Mar. Ecol. Prog. Ser. 155 1997 309 313
23. D.R. Maddison, and W.P. Maddison MacClade 4: Analysis of Phylogeny and Character Evolution 2000 Sinauer Associates Sunderland, MA
24. M. Maldonado, and P.L. Bergquist Phylum Porifera C.M. Young Atlas of Marine Invertebrate Larvae 2002 Academic Press San Diego 21 50
25. M. Maldonado, and C.M. Young Effects of physical factors on larval behavior, settlement and recruitment of four tropical demosponges Mar. Ecol. Prog. Ser. 138 1996 169 180
26. M. Maldonado, M.C. Carmona, M.J. Uriz, and A. Cruzado Decline in Mesozoic reef-building sponges explained by silicon limitation Nature 401 1999 785 788
27. P.B. Marko Fossil calibration of molecular clocks and the divergence times of geminate species pairs separated by the Isthmus of Panama Mol. Biol. Evol. 19 2002 2005 2021
28. L.M. Marquez, D.J. Miller, J.B. MacKenzie, and M.J.H. van Oppen Pseudogenes contribute to the extreme diversity of nuclear ribosomal DNA in the hard coral Acropora Mol. Biol. Evol. 20 2003 1077 1086
29. M.E. Mort, P.S. Soltis, D.E. Soltis, and M.L. Mabry Comparison of three methods for estimating internal support on phylogenetic trees Syst. Biol. 49 2000 160 171
30. G. Muricy, N. Boury-Esnault, C. Bezac, and J. Vacelet Cytological evidence for cryptic speciation in Mediterranean Oscarella species (Porifera, Homoscleromorpha) Can. J. Zool. 74 1996 881 896
31. S.A. Nichols An evaluation of support for order-level monophyly and internal relationships within the class Demospongiae using partial data from the large subunit rDNA (LSU) and cytochrome oxidase subunit I (COX1) Mol. Phylogenet. Evol. 34 2005 81 96
32. S.R. Palumbi, F. Cipriano, and M.P. Hare Predicting nuclear gene coalescence from mitochondrial data. The three-times rule Evolution 55 1998 859 868
33. D. Posada, and K.A. Crandall MODELTEST: testing the model of DNA substitution Bioinformatics 14 1998 817 818
34. A. Rambaut Se-Al: sequence alignment editor http://evolve/zoo.ox.ac.uk 1996
35. K. Rützler Family Placospongiidae Gray J.N.A. Hooper K. Rützler Systema Porifera: A Guide to the Classification of Sponges 2002 Kluwer Academic/Plenum Publishers New York 196 200
36. T. Shearer, M.J.H. van Oppen, S.L. Romano, and G. Wörheide Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria) Mol. Ecol. 11 2002 2475 2487
37. A.M. Sole-Cava, and J.P. Thorpe Genetic differentiation between morphotypes of the marine sponge Suberites ficus (Demmospongiae: Hadromerida) Mar. Biol. 93 1986 247 253
38. A.M. Sole-Cava, M. Klautau, N. Boury-Esnault, R. Borojevic, and J.P. Thorpe Genetic evidence for cryptic speciation in allopatric populations of two cosmopolitan species of the calcareous sponge genus Clathrina Mar. Biol. 111 1991 381 386
39. A.M. Sole-Cava, J.P. Thorpe, and R. Manconi A new Mediterranean species of Axinella detected by biochemical genetic methods J. Reitner H. Keupp Fossil and Recent Sponges 1991 Springer-Verlag Heidelberg 313 321
40. A.M. Sole-Cava, N. Boury-Esnault, J. Vacelet, and J.P. Thorpe Biochemical genetic divergence and systematics in sponges of the genera Corticium and Oscarella (Demospongiae: Homoscleromorpha) in the Mediterranean Sea Mar. Biol. 113 1992 299 304
41. D.L. Swofford PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4.0 beta 10 2001 Sinauer Associates Sunderland, MA
42. M.J. Uriz, M. Maldonado, X. Turon, and R. Marti How do reproductive output, larval behaviour, and recruitment contribute to adult spatial patterns in Mediterranean encrusting sponges? Mar. Ecol. Prog. Ser. 167 1998 137 148
43. M.J.H. van Oppen, B.L. Willis, T. van Rheede, and D.J. Miller Spawning times, reproductive compatibilities and genetic structuring in the Acropora aspera group: evidence for natural hybridization and semi-permeable species boundaries in corals Mol. Ecol. 11 2002 1363 1376
44. M.J.H. van Oppen, G. Wörheide, and M. Takabayashi Nuclear markers in evolutionary and population genetic studies of scleractinian corals and sponges K. Moosa Proceedings of the 9th International Coral Reef Symposium, Bali 2003 Indonesian Institute of Sciences and State Ministry for Environment Jakarta 131 138
45. G. Wörheide The reef cave dwelling ultraconservative coralline demosponge Astrosclera willeyana Lister 1900 from the Indo-Pacific Micromorphology, Ultrastructure, Biocalcification, Isotope Record, Taxonomy, Biogeography, Phylogeny Facies vol. 38 1998 1 88
46. G. Wörheide, B.M. Degnan, J.N.A. Hooper, and J. Reitner Phylogeography and taxonomy of the Indo-Pacific reef cave dwelling coralline demosponge Astrosclera willeyana-new data from nuclear internal transcribed spacer sequences K. Moosa Proceedings of the 9th International Coral Reef Symposium 2003 Indonesian Institute of Sciences and State Ministry for Environment Jakarta 339 346
47. G. Wörheide, S.A. Nichols, and J. Goldberg Intragenomic variation of the rDNA internal transcribed spacers in sponges (Phylum Porifera): implications for phylogenetic studies Mol. Phylogenet. Evol. 33 2004 816 830