The yeast PUF protein Puf5 has Pop2-independent roles in response to DNA replication stress

PLoS ONE

Volumn 5, Issue 5, 2010, Pages

  Traven, Ana ^a   Lo, Tricia L ^a,b   Lithgow, Trevor ^a   Heierhorst, Jörg ^b  

^a MONASH UNIVERSITY   (Australia)

^b ST VINCENT'S INSTITUTE OF MEDICAL RESEARCH   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; POP2 PROTEIN; PUF5 PROTEIN; REGULATOR PROTEIN; RNA BINDING PROTEIN; UNCLASSIFIED DRUG; CAFFEINE; HYDROXYUREA; MPT5 PROTEIN, S CEREVISIAE; POP2 PROTEIN, S CEREVISIAE; RIBONUCLEASE; SACCHAROMYCES CEREVISIAE PROTEIN;

ARTICLE; BINDING AFFINITY; CELLULAR DISTRIBUTION; CELLULAR STRESS RESPONSE; CONTROLLED STUDY; DNA REPLICATION; FUNGAL GENETICS; GENE DELETION; GENE EXPRESSION REGULATION; GENE REPRESSION; NONHUMAN; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN PROTEIN INTERACTION; PROTEIN RNA BINDING; TRANSCRIPTION REGULATION; YEAST; ANTIFUNGAL RESISTANCE; CELL WALL; CHEMISTRY; CYTOLOGY; CYTOPLASM; DRUG EFFECT; GENETICS; METABOLISM; MUTATION; PHYSIOLOGICAL STRESS; PROTEIN TERTIARY STRUCTURE; SACCHAROMYCES CEREVISIAE;

CAFFEINE; CELL WALL; CYTOPLASM; DNA REPLICATION; DRUG RESISTANCE, FUNGAL; HYDROXYUREA; MUTATION; PROTEIN STRUCTURE, TERTIARY; RIBONUCLEASES; RNA, MESSENGER; RNA-BINDING PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; STRESS, PHYSIOLOGICAL;

EID: 77956288371     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0010651     Document Type: Article

References (45)

1. Wharton RP, Aggarwal AK (2006) MRNA regulation by Puf domain proteins. Sci STKE 354: pe37.
2. Wickens M, Bernstein DS, Kimble J, Parker R (2002) A PUF family portrait: 39UTR regulation as a way of life. Trends Genet 18: 150-157.
3. Preiss T, Muckenthaler M, Hentze MW (1998) Poly(A)-tail-promoted translation in yeast: implications for translational control. RNA 4: 1321-1331.
4. Goldstrohm AC, Wickens M (2008) Multifunctional deadenylase complexes diversify mRNA control. Nat Rev Mol Cell Biol 9: 337-344.
5. Chagnovich D, Lehmann R (2001) Poly(A)-independent regulation of maternal hunchback translation in the Drosophila embryo. Proc Natl Acad Sci U S A 98: 11359-11364.
6. Goldstrohm AC, Hook BA, Seay DJ, Wickens M (2006) PUF proteins bind Pop2p to regulate messenger RNAs. Nat Struct Mol Biol 6: 533-539.
7. Goldstrohm AC, Seay DJ, Hook BA, Wickens M (2007) PUF protein-mediated deadenylation is catalyzed by Ccr4p. J Biol Chem 282: 109-114.
8. Hook BA, Goldstrohm AC, Seay D, Wickens M (2007) Two yeast PUF proteins negatively regulate a single mRNA. J Biol Chem 282: 15430-15438.
9. Hata H, Mitsui H, Liu H, Bai Y, Denis CL, et al. (1998) Dhh1, a putative RNA helicase, associates with the general transcription factors Pop2 and Ccr4 from Saccharomyces cerevisiae. Genetics 148: 571-579.
10. Coller JM, Parker R (2005) General translational repression by activators of mRNA decapping. Cell 122: 875-886.
11. Coller JM, Tucker M, Sheth U, Valencia-Sanchez MA, Parker R (2001) The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes. RNA 7: 1717-1727.
12. Kadyrova L, Habara Y, Lee HT, Wharton RP (2007) Translational control of maternal Cyclin B mRNA by Nanos in the Drosophila germline. Development 134: 1519-1527.
13. Suh N, Crittenden SL, Goldstrohm A, Hook B, Thompson B, et al. (2009) FBF and its dual control of gld-1 expression in the Caenorhabditis elegans germline. Genetics 181: 1249-1260.
14. Olivas W, Parker R (2000) The Puf3 protein is a transcript-specific regulator of mRNA degradation in yeast. EMBO J 19: 6602-6611.
15. Ulbricht RJ, Olivas WM (2008) Puf1p acts in combination with other yeast Puf proteins to control mRNA stability. RNA 14: 246-262.
16. Gerber AP, Herschlag D, Brown PO (2004) Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast. PLoS Biol 2: e79.
17. Tadauchi T, Matsumoto K, Herskowitz I, Irie K (2001) Post-transcriptional regulation through the HO 39-UTR by MPT5, a yeast homolog of Pumilio and FBF. EMBO J 20: 552-561.
18. García-Rodríguez LJ, Gay AC, Pon LA (2007) Puf3p, a Pumilio family RNA binding protein, localizes to mitochondria and regulates mitochondrial biogenesis and motility in budding yeast. J Cell Biol 176: 197-207.
19. Stewart MS, Krause SA, McGhie J, Gray JV (2007) Mpt5p, a stress tolerance and lifespan-promoting PUF protein in Saccharomyces cerevisiae, acts upstream of the cell wall integrity pathway. Eukaryot Cell 6: 262-270.
20. Prinz S, Aldridge C, Ramsey SA, Taylor R, Galitski T (2007) Control of signaling in a MAP-kinase pathway by an RNA-binding protein. PLoS ONE 2: e249.
21. Traven A, Hammet A, Tenis N, Denis CL, Heierhorst J (2005) Ccr4-Not complex mRNA deadenylase activity contributes to DNA damage responses in Saccharomyces cerevisiae. Genetics 169: 65-75.
22. Ohkuni K, Kikuchi Y, Hara K, Taneda T, Hayashi N, et al. (2006) Suppressor analysis of the mpt5/htr1/uth4/puf5 deletion in Saccharomyces cerevisiae. Mol Genet Genomics 275: 81-88.
23. Woolstencroft RN, Beilharz TH, Cook MA, Preiss T, Durocher D, et al. (2006) Ccr4 contributes to tolerance of replication stress through control of CRT1 mRNA poly(A) tail length. J Cell Sci 119: 5178-5192.
24. Kaeberlein M, Guarente L (2002) Saccharomyces cerevisiae MPT5 and SSD1 function in parallel pathways to promote cell wall integrity. Genetics 160: 83-95.
25. Hammet A, Pike BL, Heierhorst J (2002) Posttranscriptional regulation of the RAD5 DNA repair gene by the Dun1 kinase and the Pan2-Pan3 poly(A)-nuclease complex contributes to survival of replication blocks. J Biol Chem 277: 22469-22474.
26. Chen J, Chiang YC, Denis CL (2002) CCR4, a 39-59 poly(A) RNA and ssDNA exonuclease, is the catalytic component of the cytoplasmic deadenylase. EMBO J 21: 1414-1426.
27. Beilharz TH, Preiss T (2007) Widespread use of poly(A) tail length control to accentuate expression of the yeast transcriptome. RNA 13: 982-997.
28. Jiang YW, Kang CM (2003) Induction of S. cerevisiae filamentous differentiation by slowed DNA synthesis involves Mec1, Rad53 and Swe1 checkpoint proteins. Mol Cell Biol 14: 5116-5124.
29. Traven A, Beilharz TH, Lo TL, Lueder F, Preiss T, et al. (2009) The Ccr4-Pop2-NOT mRNA deadenylase contributes to septin organization in Saccharomyces cerevisiae. Genetics 182: 955-966.
30. Queralt E, Igual JC (2005) Functional connection between the Clb5 cyclin, the protein kinase C pathway and the Swi4 transcription factor in Saccharomyces cerevisiae. Genetics 171: 1485-1498.
31. Traven A, Lo TL, Pike BL, Friesen H, Guzzo J, et al. (2010) Dual functions of Mdt1 in genome maintenance and cell integrity pathways in Saccharomyces cerevisiae. Yeast 27: 41-52.
32. Alvaro D, Lisby M, Rothstein R (2007) Genome-wide analysis of Rad52 foci reveals diverse mechanisms impacting recombination. PLoS Genet 3: e228.
33. Maillet L, Collart MA (2002) Interaction between Not1, a component of the Ccr4-Not complex, a global regulator of transcription, and Dhh1, a putative RNA helicase. J Biol Chem 277: 2835-2842.
34. Sutton A, Immanuel D, Arndt K (1991) The SIT4 protein phosphatase function in late G1 progression into S phase. Mol Cell Biol 11: 2133-2148.
35. Chan NC, Likić VA, Waller RF, Mulhern TD, Lithgow T (2006) The Cterminal TPR domain of Tom70 defines a family of mitochondrial protein import receptors found only in animals and fungi. J Mol Biol 358: 1010-1022.
36. Piqué M, López JM, Foissac S, Guigó R, Méndez R (2008) A combinatorial code for CPE-mediated translational control. Cell 132: 434-448.
37. Kaye JA, Rose NC, Goldsworthy B, Goga A, L'Etoile ND (2009) A 39UTR Pumilio-binding element directs translational activation in olfactory sensory neurons. Neuron 61: 57-70.
38. Saint-Georges Y, Garcia M, Delaveau T, Jourdren L, Le Crom S, et al. (2008) Yeast mitochondrial biogenesis: a role for the PUF RNA-binding protein Puf3p in mRNA localization. PLoS One 3: e2293.
39. Gu W, Deng Y, Zenklusen D, Singer RH (2004) A new yeast PUF family protein, Puf6p, represses ASH1 mRNA translation and is required for its localization. Genes Dev 18: 1452-1465.
40. Zipor G, Haim-Vilmovsky L, Gelin-Licht R, Gadir N, Brocard C, et al. (2009) Localization of mRNAs coding for peroxisomal proteins in yeast, Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 106: 19848-19853.
41. Falbo KB, Shen X (2009) Histone modifications during DNA replication. Mol Cells 28: 149-154.
42. Sinha M, Watanabe S, Johnson A, Moazed D, Peterson CL (2009) Recombinational repair within heterochromatin requires ATP-dependent chromatin remodeling. Cell 138: 1109-1121.
43. Beilharz TH, Egan B, Silver PA, Hofmann K, Lithgow T (2003) Bipartite signals mediate subcellular targeting of tail-anchored membrane proteins in Saccharomyces cerevisiae. J Biol Chem 278: 8219-8223.
44. Denis CL, Chiang YC, Cui Y, Chen J (2001) Genetic evidence supports a role for the yeast CCR4-NOT complex in transcriptional elongation. Genetics 158: 627-634.
45. Merker RJ, Klein HL (2002) Hpr1D affects ribosomal DNA recombination and cell life span in Saccharomyces cerevisiae. Mol Cell Biol 22: 421-429.