Dielectrophoretic trapping and polarizability of DNA: The role of spatial conformation

Analytical Chemistry

Volumn 82, Issue 17, 2010, Pages 7141-7149

  Regtmeier, Jan ^a   Eichhorn, Ralf ^b   Bogunovic, Lukas ^a   Ros, Alexandra ^c   Anselmetti, Dario ^a  

^a BIELEFELD UNIVERSITY   (Germany)

^b NORDITA   (Denmark)

^c ARIZONA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ATOMIC FORCE; BASELINE RESOLUTION; DIELECTROPHORESIS; DIELECTROPHORETIC; DIELECTROPHORETIC EFFECTS; DIELECTROPHORETIC TRAPPING; DIFFUSION COEFFICIENTS; DNA MOLECULES; DNA SAMPLES; DNA STRUCTURE; DNA VACCINE; NANO-ASSEMBLIES; POLARIZABILITIES; POWER LAW SCALINGS; RADIUS OF GYRATION; SINGLE-MOLECULE TRAPPING; SPATIAL CONFORMATION; SPATIAL EXTENSION; SUPERCOILED; SUPERCOILED DNA; TOPOISOMERS;

ATOMIC FORCE MICROSCOPY; CONFORMATIONS; DIELECTRIC DEVICES; DIFFUSION; ELECTROPHORESIS; GENES; MICROFLUIDICS; POLARIZATION; VACCINES;

DNA;

DNA; DNA TOPOISOMERASE;

ARTICLE; ATOMIC FORCE MICROSCOPY; CHEMISTRY; CONFORMATION; DIFFUSION; DNA SUPERCOILING; METHODOLOGY; MICROFLUIDIC ANALYSIS;

DIFFUSION; DNA; DNA TOPOISOMERASES, TYPE I; DNA, SUPERHELICAL; MICROFLUIDIC ANALYTICAL TECHNIQUES; MICROSCOPY, ATOMIC FORCE; NUCLEIC ACID CONFORMATION;

EID: 77956247513     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac1005475     Document Type: Article

References (62)

1. Clark, D. P. and Pazdernik, N. Biotechnology: Applying the Genetic Revolution; Academic Press: New York, 2009.
2. Fynan, E. F., Webster, R. G., Fuller, D. H., Haynes, J. R., Santoro, J. C., and Robinson, H. L. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 11478-11482
3. Schleef, M., Voss, C., and Schmidt, T. Nature Labscene 2002, April, 18
4. Lin, C., Liu, Y., Rinker, S., and Yan, H. ChemPhysChem 2006, 7, 1641-1647
5. Rothemund, P. W. K. Nature 2006, 440, 297-302
6. Andersen, E. S., Dong, M., Nielsen, M. M., Jahn, K., Subramani, R., Mamdouh, W., Golas, M. M., Sander, B., Stark, H., Oliveira, C. L. P., Pedersen, J. S., Birkedal, V., Besenbacher, F., Gothelf, K. V., and Kjems, J. Nature 2009, 459, 73-76
7. Aldaye, F. A., Palmer, A. L., and Sleiman, H. F. Science 2008, 321, 1795-1799
8. Douglas, S. M., Dietz, H., Liedl, T., Högberg, B., Graf, F., and Shih, W. M. Nature 2009, 459, 414-418
9. Doi, M. and Edwards, S. The theory of polymer dynamics; Clarendon Press: Oxford, 1986.
10. Vologodskii, A. V. and Cozzarelli, N. R. Annu. Rev. Biophys. Biomol. Struct. 1994, 23, 609-643
11. Boles, T. C., White, J. H., and Cozzarelli, N. R. J. Mol. Biol. 1990, 213, 931-951
12. Marko, J. and Siggia, E. Phys. Rev. E 1995, 52, 2912-2938
13. Robertson, R., Laib, S., and Smith, D. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 7310-7314
14. Araki, S., Nakai, T., Hizume, K., Takeyasu, K., and Yoshikawa, K. Chem. Phys. Lett. 2006, 418, 255-259
15. Chou, C., Tegenfeldt, J., Bakajin, O., Chan, S., Cox, E., Darnton, N., Duke, T., and Austin, R. Biophys. J. 2002, 83, 2170-2179
16. Asbury, C., Diercks, A.; v. d., and Engh, G. Electrophoresis 2002, 23, 2658-2666
17. Green, N., Morgan, H., and Milner, J. J. Biochem. Biophys. Methods 1997, 35, 89-102
18. Tuukkanen, S., Kuzyk, A., Toppari, J., Häkkinen, H., Hytönen, V., Niskanen, E., Rinkiö, M., and Törma, P. Nanotechnology 2007, 18, 295204
19. Washizu, M., Kurosawa, O., Arai, I., Suzuki, S., and Shimamoto, N. IEEE Trans. Ind. Appl. 1995, 31, 447-456
20. Tegenfeldt, J., Prinz, C., Cao, H., Huang, R., Austin, R., Chou, S., Cox, E., and Sturm, J. Anal. Bioanal. Chem. 2004, 378, 1678-1692
21. Regtmeier, J., Duong, T. T., Eichhorn, R., Anselmetti, D., and Ros, A. Anal. Chem. 2007, 79, 3925-3932
22. Kuzyk, A., Yurke, B., Toppari, J. J., Linko, V., and Törmä, P. Small 2008, 4, 447-450
23. Stellwagen, N. C. Biopolymers 1981, 20, 399-434
24. Elias, J. and Eden, D. Macromolecules 1981, 14, 410-419
25. Rau, D. C. and Bloomfield, V. A. Biopolymers 1979, 18, 2783-2805
26. Hanss, M. and Bernengo, J. C. Biopolymers 1973, 12, 2151-2159
27. Bakewell, D., Ermolina, I., Morgan, H., Milner, J., and Feldman, Y. Biochim. Biophys. Acta 2000, 1493, 151-158
28. Porschke, D. J. Biophys. Chem. 1997, 66, 241-257
29. Asbury, C. and v. d. Engh, G. Biophys. J. 1998, 74, 1024-1030
30. Castellanos, A., Ramos, A., Gonzalez, A., Green, N., and Morgan, H. J. Phys. D 2003, 36, 2584-2597
31. Takashima, S., Gabriel, C., Sheppard, R. J., and Grant, E. H. Biophys. J. 1984, 46, 29-34
32. Washizu, H. and Kikuchi, K. J. Phys. Chem. B 2006, 110, 2855-2861
33. Rau, D. C. and Charney, E. Biophys. Chem. 1983, 17, 35-50
34. Rau, D. C. and Charney, E. Biophys. Chem. 1981, 14, 1-9
35. Hölzel, R. IET Nanobiotechnol. 2009, 3, 28-45
36. Cohen, H., Sapir, T., Borovok, N., Molotsky, T., Felice, R. D., Kotlyar, A. B., and Porath, D. Nano Lett. 2007, 7, 981-986
37. Pohl, H. Dielectrophoresis: The Behavior of Neutral Matter in Nonuniform Electric Fields; Cambridge University Press: Cambridge, 1978.
38. Gascoyne, P. and Vykoukal, D. Electrophoresis 2002, 23, 1973-1983
39. Washizu, M., Suzuki, S., Kurosawa, O., Nishizaka, T., and Shinohara, T. IEEE Trans. Ind. Appl. 1994, 30, 835-843
40. Chou, C. and Zenhausern, F. IEEE Eng. Med. Biol. 2003, November/December, 62-67
41. Cummings, E. IEEE Eng. Med. Biol. 2003, 75-84
42. Hawkins, B. G., Smith, A. E., Syed, Y. A., and Kirby, B. J. Anal. Chem. 2007, 79, 7291-7300
43. Bruus, H. Theoretical Microfluidics; Oxford University Press: Oxford, 2007.
44. Hellmich, W., Regtmeier, J., Duong, T., Anselmetti, D., and Ros, A. Langmuir 2005, 21, 7551-7557
45. Hogan, M., Dattagupta, N., and Crothers, D. Proc. Natl. Acad. Sci. U.S.A. 1978, 75, 195-199
46. Hornick, C. and Weill, G. Biopolymers 1971, 10, 2345-2358
47. Ajdari, A. and Prost, J. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 4468-4471
48. Schmidt, T., Friehs, K., Schleef, M., Voss, C., and Flaschel, E. Anal. Biochem. 1999, 274, 235-240
49. Duong, T., Kim, G., Ros, R., Streek, M., Schmid, F., Brugger, J., Anselmetti, D., and Ros, A. Microelectron. Eng. 2003, 67-68, 905-912
50. Saif, B., Mohr, R. K., Montrose, C. J., and Litovitz, T. A. Biopolymers 1991, 31, 1171-1180
51. Duval, M., Lutz, P., and Strazielle, C. Makromol. Chem. Rapid Commun. 1985, 6, 71-76
52. Hodgson, D. and Amis, E. J. Chem. Phys. 1991, 95, 7653-7663
53. Cocco, S., Marko, J. F., Monasson, R., Sarkar, A., and Yan, J. Eur. Phys. J. E 2003, 10, 249-263
54. Bowers, J. and Prud'homme, R. K. Phys. Chem. 1992, 96, 7135-7143
55. Viovy, J. Rev. Mod. Phys. 2000, 72, 813-872
56. Huang, L., Tegenfeldt, J., Kraeft, J., Sturm, J., Austin, R., and Cox, E. Nat. Biotechnol. 2002, 20, 1048-1051
57. Doyle, P., Bibette, J., Bancaud, A., and Viovy, J.-L. Science 2002, 295, 2237
58. Han, J. and Craighead, H. G. Science 2000, 288, 1026-1029
59. Bakajin, O., Duke, T. A., Tegenfeldt, J., Chou, C. F., Chan, S. S., Austin, R. H., and Cox, E. C. Anal. Chem. 2001, 73, 6053-6056
60. Chou, C. F., Bakajin, O., Turner, S. W. P., Duke, T. A. J., Chan, S. S., Cox, E. C., Craighead, H. G., and Austin, R. H. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 13762-13765
61. Petersen, E., Li, B., Fang, X., Luo, H., Samuilov, V., Gersappe, D., Sokolov, J., Chu, B., and Rafailovich, M. Phys. Rev. Lett. 2007, 98 088102
62. Li, B., Fang, X., Luo, H., Seo, Y.-S., Petersen, E., Ji, Y., Rafailovich, M., Sokolov, J., Gersappe, D., and Chu, B. Anal. Chem. 2006, 78, 4743-4751