메뉴 건너뛰기




Volumn 137, Issue 17, 2010, Pages 2951-2960

Developmental RNA processing of 3′UTRs in Hox mRNAs as a context-dependent mechanism modulating visibility to microRNAs

Author keywords

3 UTR; Drosophila; Hox; MiRNA; Ultrabithorax

Indexed keywords

HOX PROTEIN; MESSENGER RNA; MICRORNA; DROSOPHILA PROTEIN; HOMEODOMAIN PROTEIN; TRANSCRIPTION FACTOR; UBX PROTEIN, DROSOPHILA;

EID: 77956203735     PISSN: 09501991     EISSN: 14779129     Source Type: Journal    
DOI: 10.1242/dev.047324     Document Type: Article
Times cited : (54)

References (47)
  • 1
    • 0001171506 scopus 로고
    • The distribution of Ultrabithorax transcripts in Drosophila embryos
    • Akam, M. E. and Martinez-Arias, A. (1985). The distribution of Ultrabithorax transcripts in Drosophila embryos. EMBO J. 4, 1689-1700.
    • (1985) EMBO J. , vol.4 , pp. 1689-1700
    • Akam, M.E.1    Martinez-Arias, A.2
  • 3
    • 0037137421 scopus 로고    scopus 로고
    • Hox proteins: Sculpting body parts by activating localized cell death
    • Alonso, C. R. (2002). Hox proteins: sculpting body parts by activating localized cell death. Curr. Biol. 12, R776-R778.
    • (2002) Curr. Biol. , vol.12
    • Alonso, C.R.1
  • 4
    • 58549087914 scopus 로고    scopus 로고
    • The molecular biology underlying developmental evolution
    • Cambridge, UK: Cambridge University Press
    • Alonso, C. R. (2008). The molecular biology underlying developmental evolution. In Evolving Pathways, pp. 78-97. Cambridge, UK: Cambridge University Press.
    • (2008) Evolving Pathways , pp. 78-97
    • Alonso, C.R.1
  • 5
    • 23944472640 scopus 로고    scopus 로고
    • The molecular elements that underlie developmental evolution
    • Alonso, C. R. and Wilkins, A. S. (2005). The molecular elements that underlie developmental evolution. Nat. Rev. Genet. 6, 709-715.
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 709-715
    • Alonso, C.R.1    Wilkins, A.S.2
  • 6
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel, D. P. (2004). MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116, 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 7
    • 1942435249 scopus 로고    scopus 로고
    • Micromanagers of gene expression: The potentially widespread influence of metazoan microRNAs
    • Bartel, D. P. and Chen, C. Z. (2004). Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs. Nat. Rev. Genet. 5, 396-400.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 396-400
    • Bartel, D.P.1    Chen, C.Z.2
  • 8
    • 38149052111 scopus 로고    scopus 로고
    • MicroRNAs in the Drosophila bithorax complex
    • Bender, W. (2008). MicroRNAs in the Drosophila bithorax complex. Genes Dev. 22, 14-19.
    • (2008) Genes Dev. , vol.22 , pp. 14-19
    • Bender, W.1
  • 9
    • 33847660443 scopus 로고    scopus 로고
    • An optimized transgenesis system for Drosophila using germ-line-specific phiC31 integrases
    • Bischof, J., Maeda, R. K. and Hediger, M. (2007). An optimized transgenesis system for Drosophila using germ-line-specific phiC31 integrases. Proc. Natl. Acad. Sci. USA 104, 3312.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 3312
    • Bischof, J.1    Maeda, R.K.2    Hediger, M.3
  • 10
    • 0031016569 scopus 로고    scopus 로고
    • Interactions of Drosophila Ultrabithorax regulatory regions with native and foreign promoters
    • Casares, F., Bender, W., Merriam, J. and Sanchez-Herrero, E. (1997). Interactions of Drosophila Ultrabithorax regulatory regions with native and foreign promoters. Genetics 145, 123-137. (Pubitemid 27051488)
    • (1997) Genetics , vol.145 , Issue.1 , pp. 123-137
    • Casares, F.1    Bender, W.2    Merriam, J.3    Sanchez-Herrero, E.4
  • 11
    • 56649107901 scopus 로고    scopus 로고
    • Tip-cell migration controls stalk-cell intercalation during Drosophila tracheal tube elongation
    • Caussinus, E., Colombelli, J. and Affolter, M. (2008). Tip-cell migration controls stalk-cell intercalation during Drosophila tracheal tube elongation. Curr. Biol. 18, 1727-1734.
    • (2008) Curr. Biol. , vol.18 , pp. 1727-1734
    • Caussinus, E.1    Colombelli, J.2    Affolter, M.3
  • 12
    • 0024727321 scopus 로고
    • The molecular genetics of the bithorax complex of Drosophila: Characterization of the products of the Abdominal-B domain
    • Celniker, S. E., Keelan, D. J. and Lewis, E. B. (1989). The molecular genetics of the bithorax complex of Drosophila: characterization of the products of the Abdominal-B domain. Genes Dev. 3, 1424-1436.
    • (1989) Genes Dev. , vol.3 , pp. 1424-1436
    • Celniker, S.E.1    Keelan, D.J.2    Lewis, E.B.3
  • 13
    • 0025673941 scopus 로고
    • The molecular genetics of the bithorax complex of Drosophila: Cis-regulation in the Abdominal-B domain
    • Celniker, S. E., Sharma, S., Keelan, D. J. and Lewis, E. B. (1990). The molecular genetics of the bithorax complex of Drosophila: cis-regulation in the Abdominal-B domain. EMBO J. 9, 4277-4286.
    • (1990) EMBO J. , vol.9 , pp. 4277-4286
    • Celniker, S.E.1    Sharma, S.2    Keelan, D.J.3    Lewis, E.B.4
  • 14
    • 34848907422 scopus 로고    scopus 로고
    • Oriented cell divisions in the extending germband of Drosophila
    • da Silva, S. M. and Vincent, J. P. (2007). Oriented cell divisions in the extending germband of Drosophila. Development 134, 3049-3054.
    • (2007) Development , vol.134 , pp. 3049-3054
    • Da Silva, S.M.1    Vincent, J.P.2
  • 16
    • 0025183519 scopus 로고
    • The three postblastoderm cell cycles of Drosophila embryogenesis are regulated in G2 by string
    • Edgar, B. A. and O'Farrell, P. H. (1990). The three postblastoderm cell cycles of Drosophila embryogenesis are regulated in G2 by string. Cell 62, 469-480.
    • (1990) Cell , vol.62 , pp. 469-480
    • Edgar, B.A.1    O'Farrell, P.H.2
  • 17
    • 0028109854 scopus 로고
    • Transcriptional regulation of string (cdc25): A link between developmental programming and the cell cycle
    • Edgar, B. A., Lehman, D. A. and O'Farrell, P. H. (1994). Transcriptional regulation of string (cdc25): a link between developmental programming and the cell cycle. Development 120, 3131-3143.
    • (1994) Development , vol.120 , pp. 3131-3143
    • Edgar, B.A.1    Lehman, D.A.2    O'Farrell, P.H.3
  • 18
    • 37648998629 scopus 로고    scopus 로고
    • Getting to the root of miRNA-mediated gene silencing
    • Eulalio, A., Huntzinger, E. and Izaurralde, E. (2008). Getting to the root of miRNA-mediated gene silencing. Cell 132, 9-14.
    • (2008) Cell , vol.132 , pp. 9-14
    • Eulalio, A.1    Huntzinger, E.2    Izaurralde, E.3
  • 21
    • 84887212467 scopus 로고    scopus 로고
    • Systematic functional analysis of Bicaudal-D serine phosphorylation and intragenic suppression of a female sterile allele of BicD
    • Koch, R., Ledermann, R., Urwyler, O., Heller, M. and Suter, B. (2009). Systematic functional analysis of Bicaudal-D serine phosphorylation and intragenic suppression of a female sterile allele of BicD. PLoS ONE 4, e4552.
    • (2009) PLoS ONE , vol.4
    • Koch, R.1    Ledermann, R.2    Urwyler, O.3    Heller, M.4    Suter, B.5
  • 22
    • 0024614879 scopus 로고
    • Structure and expression of a family of Ultrabithorax mRNAs generated by alternative splicing and polyadenylation in Drosophila
    • Kornfeld, K., Saint, R. B., Beachy, P. A., Harte, P. J., Peattie, D. A. and Hogness, D. S. (1989). Structure and expression of a family of Ultrabithorax mRNAs generated by alternative splicing and polyadenylation in Drosophila. Genes Dev. 3, 243-258.
    • (1989) Genes Dev. , vol.3 , pp. 243-258
    • Kornfeld, K.1    Saint, R.B.2    Beachy, P.A.3    Harte, P.J.4    Peattie, D.A.5    Hogness, D.S.6
  • 23
    • 0024095318 scopus 로고
    • Different transcripts of the Drosophila Abd-B gene correlate with distinct genetic sub-functions
    • Kuziora, M. A. and McGinnis, W. (1988). Different transcripts of the Drosophila Abd-B gene correlate with distinct genetic sub-functions. EMBO J. 7, 3233-3244.
    • (1988) EMBO J. , vol.7 , pp. 3233-3244
    • Kuziora, M.A.1    McGinnis, W.2
  • 24
    • 0023003569 scopus 로고
    • Structure of transcripts from the homeotic Antennapedia gene of Drosophila melanogaster: Two promoters control the major protein-coding region
    • Laughon, A., Boulet, A. M., Bermingham, J. R., Jr, Laymon, R. A. and Scott, M. P. (1986). Structure of transcripts from the homeotic Antennapedia gene of Drosophila melanogaster: two promoters control the major protein-coding region. Mol. Cell. Biol. 6, 4676-4689. (Pubitemid 17217405)
    • (1986) Molecular and Cellular Biology , vol.6 , Issue.12 , pp. 4676-4689
    • Laughon, A.1    Boulet, A.M.2    Bermingham Jr., J.R.3
  • 25
    • 0028086441 scopus 로고
    • Distinct morphogenetic functions of similar small GTPases: Drosophila Drac1 is involved in axonal outgrowth and myoblast fusion
    • Luo, L., Liao, Y. J., Jan, L. Y. and Jan, Y. N. (1994). Distinct morphogenetic functions of similar small GTPases: Drosophila Drac1 is involved in axonal outgrowth and myoblast fusion. Genes Dev. 8, 1787.
    • (1994) Genes Dev. , vol.8 , pp. 1787
    • Luo, L.1    Liao, Y.J.2    Jan, L.Y.3    Jan, Y.N.4
  • 26
    • 33646690307 scopus 로고    scopus 로고
    • The ABC of the BX-C: The bithorax complex explained
    • Maeda, R. K. and Karch, F. (2006). The ABC of the BX-C: the bithorax complex explained. Development 133, 1413-1422.
    • (2006) Development , vol.133 , pp. 1413-1422
    • Maeda, R.K.1    Karch, F.2
  • 27
    • 0028001320 scopus 로고
    • Enhancer traps in the Drosophila bithorax complex mark parasegmental domains
    • McCall, K., O'Connor, M. B. and Bender, W. (1994). Enhancer traps in the Drosophila bithorax complex mark parasegmental domains. Genetics 138, 387-399.
    • (1994) Genetics , vol.138 , pp. 387-399
    • McCall, K.1    O'Connor, M.B.2    Bender, W.3
  • 28
    • 24644502657 scopus 로고    scopus 로고
    • From birth to death: The complex lives of eukaryotic mRNAs
    • Moore, M. J. (2005). From birth to death: the complex lives of eukaryotic mRNAs. Science 309, 1514-1518.
    • (2005) Science , vol.309 , pp. 1514-1518
    • Moore, M.J.1
  • 29
    • 0019891163 scopus 로고
    • Sequential functions of the bithorax complex of Drosophila
    • Morata, G. and Kerridge, S. (1981). Sequential functions of the bithorax complex of Drosophila. Nature 290, 778-781.
    • (1981) Nature , vol.290 , pp. 778-781
    • Morata, G.1    Kerridge, S.2
  • 30
    • 0023955437 scopus 로고
    • Alternative RNA products from the Ultrabithorax domain of the bithorax complex
    • O'Connor, M. B., Binari, R., Perkins, L. A. and Bender, W. (1988). Alternative RNA products from the Ultrabithorax domain of the bithorax complex. EMBO J. 7, 435-445.
    • (1988) EMBO J. , vol.7 , pp. 435-445
    • O'Connor, M.B.1    Binari, R.2    Perkins, L.A.3    Bender, W.4
  • 31
    • 28944438404 scopus 로고    scopus 로고
    • Modulating Hox gene functions during animal body patterning
    • DOI 10.1038/nrg1726
    • Pearson, J. C., Lemons, D. and McGinnis, W. (2005). Modulating Hox gene functions during animal body patterning. Nat. Rev. Genet. 6, 893-904. (Pubitemid 41782157)
    • (2005) Nature Reviews Genetics , vol.6 , Issue.12 , pp. 893-904
    • Pearson, J.C.1    Lemons, D.2    McGinnis, W.3
  • 32
    • 0000396280 scopus 로고
    • The bithorax complex: Control of segmental identity
    • Peifer, M., Karch, F. and Bender, W. (1987). The bithorax complex: control of segmental identity. Genes Dev. 1, 891-898.
    • (1987) Genes Dev. , vol.1 , pp. 891-898
    • Peifer, M.1    Karch, F.2    Bender, W.3
  • 33
    • 0032102669 scopus 로고    scopus 로고
    • Homeotic regulation of segment-specific differences in neuroblast numbers and proliferation in the Drosophila central nervous system
    • Prokop, A., Bray, S., Harrison, E. and Technau, G. M. (1998). Homeotic regulation of segment-specific differences in neuroblast numbers and proliferation in the Drosophila central nervous system. Mech. Dev. 74, 99-110.
    • (1998) Mech. Dev. , vol.74 , pp. 99-110
    • Prokop, A.1    Bray, S.2    Harrison, E.3    Technau, G.M.4
  • 34
    • 62149145454 scopus 로고    scopus 로고
    • Multiple roles for Hox genes in segment-specific shaping of CNS lineages
    • Rogulja-Ortmann, A. and Technau, G. M. (2008). Multiple roles for Hox genes in segment-specific shaping of CNS lineages. Fly 2, 316-319.
    • (2008) Fly , vol.2 , pp. 316-319
    • Rogulja-Ortmann, A.1    Technau, G.M.2
  • 35
    • 58149238200 scopus 로고    scopus 로고
    • Antagonistic roles for Ultrabithorax and Antennapedia in regulating segment-specific apoptosis of differentiated motoneurons in the Drosophila embryonic central nervous system
    • Rogulja-Ortmann, A., Renner, S. and Technau, G. M. (2008). Antagonistic roles for Ultrabithorax and Antennapedia in regulating segment-specific apoptosis of differentiated motoneurons in the Drosophila embryonic central nervous system. Development 135, 3435-3445.
    • (2008) Development , vol.135 , pp. 3435-3445
    • Rogulja-Ortmann, A.1    Renner, S.2    Technau, G.M.3
  • 36
    • 29144438977 scopus 로고    scopus 로고
    • The Drosophila microRNA iab-4 causes a dominant homeotic transformation of halteres to wings
    • Ronshaugen, M., Biemar, F., Piel, J., Levine, M. and Lai, E. C. (2005). The Drosophila microRNA iab-4 causes a dominant homeotic transformation of halteres to wings. Genes Dev. 19, 2947-2952.
    • (2005) Genes Dev. , vol.19 , pp. 2947-2952
    • Ronshaugen, M.1    Biemar, F.2    Piel, J.3    Levine, M.4    Lai, E.C.5
  • 37
    • 4243449933 scopus 로고
    • The structure and expression of a hybrid homeotic gene
    • Rowe, A. and Akam, M. (1988). The structure and expression of a hybrid homeotic gene. EMBO J. 7, 1107-1114.
    • (1988) EMBO J. , vol.7 , pp. 1107-1114
    • Rowe, A.1    Akam, M.2
  • 38
    • 0001439439 scopus 로고
    • The Abdominal-B gene of Drosophila melanogaster: Overlapping transcripts exhibit two different spatial distributions
    • Sanchez-Herrero, E. and Crosby, M. A. (1988). The Abdominal-B gene of Drosophila melanogaster: overlapping transcripts exhibit two different spatial distributions. EMBO J. 7, 2163-2173.
    • (1988) EMBO J. , vol.7 , pp. 2163-2173
    • Sanchez-Herrero, E.1    Crosby, M.A.2
  • 39
    • 46249092601 scopus 로고    scopus 로고
    • Proliferating cells express mRNAs with shortened 3′ untranslated regions and fewer microRNA target sites
    • Sandberg, R., Neilson, J. R., Sarma, A., Sharp, P. A. and Burge, C. B. (2008). Proliferating cells express mRNAs with shortened 3′ untranslated regions and fewer microRNA target sites. Science 320, 1643-1647.
    • (2008) Science , vol.320 , pp. 1643-1647
    • Sandberg, R.1    Neilson, J.R.2    Sarma, A.3    Sharp, P.A.4    Burge, C.B.5
  • 40
    • 0022707414 scopus 로고
    • Structural organization and sequence of the homeotic gene Antennapedia of Drosophila melanogaster
    • Schneuwly, S., Kuroiwa, A., Baumgartner, P. and Gehring, W. J. (1986). Structural organization and sequence of the homeotic gene Antennapedia of Drosophila melanogaster. EMBO J. 5, 733-739.
    • (1986) EMBO J. , vol.5 , pp. 733-739
    • Schneuwly, S.1    Kuroiwa, A.2    Baumgartner, P.3    Gehring, W.J.4
  • 43
    • 28944439309 scopus 로고    scopus 로고
    • Animal microRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution
    • Stark, A., Brennecke, J., Bushati, N., Russell, R. B. and Cohen, S. M. (2005). Animal microRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution. Cell 123, 1133-1146.
    • (2005) Cell , vol.123 , pp. 1133-1146
    • Stark, A.1    Brennecke, J.2    Bushati, N.3    Russell, R.B.4    Cohen, S.M.5
  • 45
    • 0023002290 scopus 로고
    • Multiple transcripts from the Antennapedia gene of Drosophila melanogaster
    • Stroeher, V. L., Jorgensen, E. M. and Garber, R. L. (1986). Multiple transcripts from the Antennapedia gene of Drosophila melanogaster. Mol. Cell. Biol. 6, 4667-4675.
    • (1986) Mol. Cell. Biol. , vol.6 , pp. 4667-4675
    • Stroeher, V.L.1    Jorgensen, E.M.2    Garber, R.L.3
  • 46
    • 13744254695 scopus 로고    scopus 로고
    • A large-scale analysis of mRNA polyadenylation of human and mouse genes
    • Tian, B., Hu, J., Zhang, H. and Lutz, C. S. (2005). A large-scale analysis of mRNA polyadenylation of human and mouse genes. Nucleic Acids Res. 33, 201-212.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 201-212
    • Tian, B.1    Hu, J.2    Zhang, H.3    Lutz, C.S.4
  • 47
    • 38149022486 scopus 로고    scopus 로고
    • Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci
    • Tyler, D. M., Okamura, K., Chung, W. J., Hagen, J. W., Berezikov, E., Hannon, G. J. and Lai, E. C. (2008). Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci. Genes Dev. 22, 26-36.
    • (2008) Genes Dev. , vol.22 , pp. 26-36
    • Tyler, D.M.1    Okamura, K.2    Chung, W.J.3    Hagen, J.W.4    Berezikov, E.5    Hannon, G.J.6    Lai, E.C.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.