메뉴 건너뛰기




Volumn 49, Issue 35, 2010, Pages 7665-7673

Molecular simulations of lipid flip-flop in the presence of model transmembrane helices

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; BIOLOGICAL MEMBRANES; COMPUTER SIMULATION; CYTOLOGY; DESORPTION; FREE ENERGY; PEPTIDES; PHOSPHOLIPIDS;

EID: 77956158063     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi100878q     Document Type: Article
Times cited : (34)

References (49)
  • 1
    • 41949133917 scopus 로고    scopus 로고
    • Regulation of phospholipid asymmetry in the erythrocyte membrane
    • Daleke, D. L. (2008) Regulation of phospholipid asymmetry in the erythrocyte membrane Curr. Opin. Hematol. 15, 191-195
    • (2008) Curr. Opin. Hematol. , vol.15 , pp. 191-195
    • Daleke, D.L.1
  • 3
    • 0020052831 scopus 로고
    • Generation of prothrombin-converting activity and the exposure of phosphatidylserine at the outer surface of platelets
    • Bevers, E. M., Comfurius, P., van Rijn, J. L., Hemker, H. C., and Zwaal, R. F. (1982) Generation of prothrombin-converting activity and the exposure of phosphatidylserine at the outer surface of platelets Eur. J. Biochem. 122, 429-436
    • (1982) Eur. J. Biochem. , vol.122 , pp. 429-436
    • Bevers, E.M.1    Comfurius, P.2    Van Rijn, J.L.3    Hemker, H.C.4    Zwaal, R.F.5
  • 4
    • 0021047734 scopus 로고
    • Changes in membrane phospholipid distribution during platelet activation
    • Bevers, E. M., Comfurius, P., and Zwaal, R. F. (1983) Changes in membrane phospholipid distribution during platelet activation Biochim. Biophys. Acta 736, 57-66
    • (1983) Biochim. Biophys. Acta , vol.736 , pp. 57-66
    • Bevers, E.M.1    Comfurius, P.2    Zwaal, R.F.3
  • 5
    • 0026508561 scopus 로고
    • Exposure of phosphatidylserine on the surface of apoptotic lymphocytes triggers specific recognition and removal by macrophages
    • Fadok, V. A., Voelker, D. R., Campbell, P. A., Cohen, J. J., Bratton, D. L., and Henson, P. M. (1992) Exposure of phosphatidylserine on the surface of apoptotic lymphocytes triggers specific recognition and removal by macrophages J. Immunol. 148, 2207-2216
    • (1992) J. Immunol. , vol.148 , pp. 2207-2216
    • Fadok, V.A.1    Voelker, D.R.2    Campbell, P.A.3    Cohen, J.J.4    Bratton, D.L.5    Henson, P.M.6
  • 6
    • 0025261905 scopus 로고
    • Protein-mediated phospholipid translocation in the endoplasmic reticulum with a low lipid specificity
    • Herrmann, A., Zachowski, A., and Devaux, P. F. (1990) Protein-mediated phospholipid translocation in the endoplasmic reticulum with a low lipid specificity Biochemistry 29, 2023-2027
    • (1990) Biochemistry , vol.29 , pp. 2023-2027
    • Herrmann, A.1    Zachowski, A.2    Devaux, P.F.3
  • 7
    • 0029978861 scopus 로고    scopus 로고
    • Ultrafast glycerophospholipid-selective transbilayer motion mediated by a protein in the endoplasmic reticulum membrane
    • Buton, X., Morrot, G., Fellmann, P., and Seigneuret, M. (1996) Ultrafast glycerophospholipid-selective transbilayer motion mediated by a protein in the endoplasmic reticulum membrane J. Biol. Chem. 271, 6651-6657
    • (1996) J. Biol. Chem. , vol.271 , pp. 6651-6657
    • Buton, X.1    Morrot, G.2    Fellmann, P.3    Seigneuret, M.4
  • 8
    • 0036425599 scopus 로고    scopus 로고
    • Phospholipid flip-flop in biogenic membranes: What is needed to connect opposite sides
    • Kol, M. A., de Kruijff, B., and de Kroon, A. I. (2002) Phospholipid flip-flop in biogenic membranes: what is needed to connect opposite sides Semin. Cell Dev. Biol. 13, 163-170
    • (2002) Semin. Cell Dev. Biol. , vol.13 , pp. 163-170
    • Kol, M.A.1    De Kruijff, B.2    De Kroon, A.I.3
  • 9
    • 0015245041 scopus 로고
    • Inside-outside transitions of phospholipids in vesicle membranes
    • Kornberg, R. D. and McConnell, H. M. (1971) Inside-outside transitions of phospholipids in vesicle membranes Biochemistry 10, 1111-11120
    • (1971) Biochemistry , vol.10 , pp. 1111-11120
    • Kornberg, R.D.1    McConnell, H.M.2
  • 10
    • 0017684055 scopus 로고
    • Rapid transmembrane movement of newly synthesized phospholipids during membrane assembly
    • Rothman, J. E. and Kennedy, E. P. (1977) Rapid transmembrane movement of newly synthesized phospholipids during membrane assembly Proc. Natl. Acad. Sci. U.S.A. 74, 1821-1825
    • (1977) Proc. Natl. Acad. Sci. U.S.A. , vol.74 , pp. 1821-1825
    • Rothman, J.E.1    Kennedy, E.P.2
  • 11
    • 0032563089 scopus 로고    scopus 로고
    • Rapid transmembrane movement of newly synthesized phosphatidylethanolamine across the inner membrane of Escherichia coli
    • Huijbregts, R. P., de Kroon, A. I., and de Kruijff, B. (1998) Rapid transmembrane movement of newly synthesized phosphatidylethanolamine across the inner membrane of Escherichia coli J. Biol. Chem. 273, 18936-18942
    • (1998) J. Biol. Chem. , vol.273 , pp. 18936-18942
    • Huijbregts, R.P.1    De Kroon, A.I.2    De Kruijff, B.3
  • 12
    • 0037435555 scopus 로고    scopus 로고
    • Phospholipid flop induced by transmembrane peptides in model membranes is modulated by lipid composition
    • Kol, M. A., van Laak, A. N., Rijkers, D. T., Killian, J. A., de Kroon, A. I., and de Kruijff, B. (2003) Phospholipid flop induced by transmembrane peptides in model membranes is modulated by lipid composition Biochemistry 42, 231-237
    • (2003) Biochemistry , vol.42 , pp. 231-237
    • Kol, M.A.1    Van Laak, A.N.2    Rijkers, D.T.3    Killian, J.A.4    De Kroon, A.I.5    De Kruijff, B.6
  • 13
    • 0035807045 scopus 로고    scopus 로고
    • Membrane-spanning peptides induce phospholipid flop: A model for phospholipid translocation across the inner membrane of E. coli
    • Kol, M. A., de Kroon, A. I., Rijkers, D. T., Killian, J. A., and de Kruijff, B. (2001) Membrane-spanning peptides induce phospholipid flop: a model for phospholipid translocation across the inner membrane of E. coli Biochemistry 40, 10500-10506
    • (2001) Biochemistry , vol.40 , pp. 10500-10506
    • Kol, M.A.1    De Kroon, A.I.2    Rijkers, D.T.3    Killian, J.A.4    De Kruijff, B.5
  • 14
    • 0041589300 scopus 로고    scopus 로고
    • Translocation of phospholipids is facilitated by a subset of membrane-spanning proteins of the bacterial cytoplasmic membrane
    • Kol, M. A., van Dalen, A., de Kroon, A. I., and de Kruijff, B. (2003) Translocation of phospholipids is facilitated by a subset of membrane-spanning proteins of the bacterial cytoplasmic membrane J. Biol. Chem. 278, 24586-24593
    • (2003) J. Biol. Chem. , vol.278 , pp. 24586-24593
    • Kol, M.A.1    Van Dalen, A.2    De Kroon, A.I.3    De Kruijff, B.4
  • 15
    • 33749182054 scopus 로고    scopus 로고
    • Lipids out of equilibrium: Energetics of desorption and pore mediated flip-flop
    • Tieleman, D. P. and Marrink, S. J. (2006) Lipids out of equilibrium: energetics of desorption and pore mediated flip-flop J. Am. Chem. Soc. 128, 12462-12467
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 12462-12467
    • Tieleman, D.P.1    Marrink, S.J.2
  • 16
    • 37249011366 scopus 로고    scopus 로고
    • Molecular mechanism for lipid flip-flops
    • Gurtovenko, A. A. and Vattulainen, I. (2007) Molecular mechanism for lipid flip-flops J. Phys. Chem. B 111, 13554-13559
    • (2007) J. Phys. Chem. B , vol.111 , pp. 13554-13559
    • Gurtovenko, A.A.1    Vattulainen, I.2
  • 17
    • 51449104404 scopus 로고    scopus 로고
    • Chemically induced phospholipid translocation across biological membranes
    • Gurtovenko, A. A., Onike, O. I., and Anwar, J. (2008) Chemically induced phospholipid translocation across biological membranes Langmuir 24, 9656-9660
    • (2008) Langmuir , vol.24 , pp. 9656-9660
    • Gurtovenko, A.A.1    Onike, O.I.2    Anwar, J.3
  • 18
    • 67749129321 scopus 로고    scopus 로고
    • Thermodynamic analysis of the effect of cholesterol on dipalmitoylphosphatidylcholine lipid membranes
    • Bennett, W. F., MacCallum, J. L., and Tieleman, D. P. (2009) Thermodynamic analysis of the effect of cholesterol on dipalmitoylphosphatidylcholine lipid membranes J. Am. Chem. Soc. 131, 1972-1978
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 1972-1978
    • Bennett, W.F.1    MacCallum, J.L.2    Tieleman, D.P.3
  • 19
    • 69349095310 scopus 로고    scopus 로고
    • Thermodynamics of flip-flop and desorption for a systematic series of phosphatidylcholine lipids
    • Sapay, N., Bennett, W. F. D., and Tieleman, D. P. (2009) Thermodynamics of flip-flop and desorption for a systematic series of phosphatidylcholine lipids Soft Matter 5, 3295-3302
    • (2009) Soft Matter , vol.5 , pp. 3295-3302
    • Sapay, N.1    Bennett, W.F.D.2    Tieleman, D.P.3
  • 20
    • 58149181485 scopus 로고    scopus 로고
    • Lipids on the move: Simulations of membrane pores, domains, stalks and curves
    • Marrink, S. J., de Vries, A. H., and Tieleman, D. P. (2009) Lipids on the move: simulations of membrane pores, domains, stalks and curves Biochim. Biophys. Acta 1788, 149-168
    • (2009) Biochim. Biophys. Acta , vol.1788 , pp. 149-168
    • Marrink, S.J.1    De Vries, A.H.2    Tieleman, D.P.3
  • 21
    • 0029912748 scopus 로고    scopus 로고
    • Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids
    • Jorgensen, W. L., Maxwell, D. S., and Tirado-Rives, J. (1996) Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids J. Am. Chem. Soc. 118, 11225-11236
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 11225-11236
    • Jorgensen, W.L.1    Maxwell, D.S.2    Tirado-Rives, J.3
  • 23
    • 33745630723 scopus 로고    scopus 로고
    • Membrane protein simulations with a united-atom lipid and all-atom protein model: Lipid-protein interactions, side chain transfer free energies and model proteins
    • Tieleman, D. P., MacCallum, J. L., Ash, W. L., Kandt, C., Xu, Z. T., and Monticelli, L. (2006) Membrane protein simulations with a united-atom lipid and all-atom protein model: lipid-protein interactions, side chain transfer free energies and model proteins J. Phys.-Cond. Matter 18, S1221-S1234
    • (2006) J. Phys.-Cond. Matter , vol.18
    • Tieleman, D.P.1    MacCallum, J.L.2    Ash, W.L.3    Kandt, C.4    Xu, Z.T.5    Monticelli, L.6
  • 25
    • 33846823909 scopus 로고
    • Particle mesh Ewald-an N.Log(N) method for Ewald sums in large systems
    • Darden, T., York, D., and Pedersen, L. (1993) Particle mesh Ewald-an N.Log(N) method for Ewald sums in large systems J. Chem. Phys. 98, 10089-10092
    • (1993) J. Chem. Phys. , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 28
  • 29
    • 84986440341 scopus 로고
    • Settle-an analytical version of the shake and rattle algorithm for rigid water models
    • Miyamoto, S. and Kollman, P. A. (1992) Settle-an analytical version of the shake and rattle algorithm for rigid water models J. Comput. Chem. 13, 952-962
    • (1992) J. Comput. Chem. , vol.13 , pp. 952-962
    • Miyamoto, S.1    Kollman, P.A.2
  • 30
    • 43649094583 scopus 로고    scopus 로고
    • Distribution of amino acids in a lipid bilayer from computer simulations
    • MacCallum, J. L., Bennett, W. F., and Tieleman, D. P. (2008) Distribution of amino acids in a lipid bilayer from computer simulations Biophys. J. 94, 3393-3404
    • (2008) Biophys. J. , vol.94 , pp. 3393-3404
    • MacCallum, J.L.1    Bennett, W.F.2    Tieleman, D.P.3
  • 31
    • 0000656482 scopus 로고
    • Efficient Monte Carlo methods for the computer simulation of biological molecules
    • Bouzida, D., Kumar, S., and Swendsen, R. H. (1992) Efficient Monte Carlo methods for the computer simulation of biological molecules Phys. Rev. A 45, 8894-8901
    • (1992) Phys. Rev. A , vol.45 , pp. 8894-8901
    • Bouzida, D.1    Kumar, S.2    Swendsen, R.H.3
  • 33
    • 70349436810 scopus 로고    scopus 로고
    • Protein contents in biological membranes can explain abnormal solvation of charged and polar residues
    • Johansson, A. C. and Lindahl, E. (2009) Protein contents in biological membranes can explain abnormal solvation of charged and polar residues Proc. Natl. Acad. Sci. U.S.A. 106, 15684-15689
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 15684-15689
    • Johansson, A.C.1    Lindahl, E.2
  • 34
  • 35
    • 0024290914 scopus 로고
    • Transbilayer diffusion of phospholipids: Dependence on headgroup structure and acyl chain length
    • Homan, R. and Pownall, H. J. (1988) Transbilayer diffusion of phospholipids: dependence on headgroup structure and acyl chain length Biochim. Biophys. Acta 938, 155-166
    • (1988) Biochim. Biophys. Acta , vol.938 , pp. 155-166
    • Homan, R.1    Pownall, H.J.2
  • 36
    • 67650082648 scopus 로고    scopus 로고
    • Flip-flop of phospholipids in vesicles: Kinetic analysis with time-resolved small-angle neutron scattering
    • Nakano, M., Fukuda, M., Kudo, T., Matsuzaki, N., Azuma, T., Sekine, K., Endo, H., and Handat, T. (2009) Flip-flop of phospholipids in vesicles: kinetic analysis with time-resolved small-angle neutron scattering J. Phys. Chem. B 113, 6745-6748
    • (2009) J. Phys. Chem. B , vol.113 , pp. 6745-6748
    • Nakano, M.1    Fukuda, M.2    Kudo, T.3    Matsuzaki, N.4    Azuma, T.5    Sekine, K.6    Endo, H.7    Handat, T.8
  • 37
    • 0036296762 scopus 로고    scopus 로고
    • Investigation on lipid asymmetry using lipid probes: Comparison between spin-labeled lipids and fluorescent lipids
    • Devaux, P. F., Fellmann, P., and Hervé, P. (2002) Investigation on lipid asymmetry using lipid probes: comparison between spin-labeled lipids and fluorescent lipids Chem. Phys. Lipids 116, 115-134
    • (2002) Chem. Phys. Lipids , vol.116 , pp. 115-134
    • Devaux, P.F.1    Fellmann, P.2    Hervé, P.3
  • 38
    • 0034023561 scopus 로고    scopus 로고
    • Rapid flip-flop of phospholipids in endoplasmic reticulum membranes studied by a stopped-flow approach
    • Marx, U., Lassmann, G., Holzhutter, H. G., Wustner, D., Muller, P., Hohlig, A., Kubelt, J., and Herrmann, A. (2000) Rapid flip-flop of phospholipids in endoplasmic reticulum membranes studied by a stopped-flow approach Biophys. J. 78, 2628-2640
    • (2000) Biophys. J. , vol.78 , pp. 2628-2640
    • Marx, U.1    Lassmann, G.2    Holzhutter, H.G.3    Wustner, D.4    Muller, P.5    Hohlig, A.6    Kubelt, J.7    Herrmann, A.8
  • 39
    • 25844515222 scopus 로고    scopus 로고
    • 1,2-diacyl-phosphatidylcholine flip-flop measured directly by sum-frequency vibrational spectroscopy
    • Liu, J. and Conboy, J. C. (2005) 1,2-diacyl-phosphatidylcholine flip-flop measured directly by sum-frequency vibrational spectroscopy Biophys. J. 89, 2522-2532
    • (2005) Biophys. J. , vol.89 , pp. 2522-2532
    • Liu, J.1    Conboy, J.C.2
  • 40
    • 0031740415 scopus 로고    scopus 로고
    • Hydrophobic mismatch between proteins and lipids in membranes
    • Killian, J. A. (1998) Hydrophobic mismatch between proteins and lipids in membranes Biochim. Biophys. Acta 1376, 401-415
    • (1998) Biochim. Biophys. Acta , vol.1376 , pp. 401-415
    • Killian, J.A.1
  • 41
    • 0030949124 scopus 로고    scopus 로고
    • Functional rafts in cell membranes
    • Simons, K. and Ikonen, E. (1997) Functional rafts in cell membranes Nature 387, 569-572
    • (1997) Nature , vol.387 , pp. 569-572
    • Simons, K.1    Ikonen, E.2
  • 42
    • 0022080948 scopus 로고
    • Intrinsic curvature hypothesis for biomembrane lipid-composition - A role for nonbilayer lipids
    • Gruner, S. M. (1985) Intrinsic curvature hypothesis for biomembrane lipid-composition - a role for nonbilayer lipids Proc. Natl. Acad. Sci. U.S.A. 82, 3665-3669
    • (1985) Proc. Natl. Acad. Sci. U.S.A. , vol.82 , pp. 3665-3669
    • Gruner, S.M.1
  • 43
    • 0031795752 scopus 로고    scopus 로고
    • Lipid polymorphism and protein-lipid interactions
    • Epand, R. M. (1998) Lipid polymorphism and protein-lipid interactions Biochim. Biophys. Acta 1376, 353-368
    • (1998) Biochim. Biophys. Acta , vol.1376 , pp. 353-368
    • Epand, R.M.1
  • 44
    • 0030048521 scopus 로고    scopus 로고
    • Small concentrations of alamethicin induce a cubic phase in bulk phosphatidylethanolamine mixtures
    • Keller, S. L., Gruner, S. M., and Gawrisch, K. (1996) Small concentrations of alamethicin induce a cubic phase in bulk phosphatidylethanolamine mixtures Biochim. Biophys. Acta 1278, 241-246
    • (1996) Biochim. Biophys. Acta , vol.1278 , pp. 241-246
    • Keller, S.L.1    Gruner, S.M.2    Gawrisch, K.3
  • 45
    • 0030853508 scopus 로고    scopus 로고
    • Nonlamellar phases induced by the interaction of gramicidin S with lipid bilayers. A possible relationship to membrane-disrupting activity
    • Prenner, E. J., Lewis, R. N., Neuman, K. C., Gruner, S. M., Kondejewski, L. H., Hodges, R. S., and McElhaney, R. N. (1997) Nonlamellar phases induced by the interaction of gramicidin S with lipid bilayers. A possible relationship to membrane-disrupting activity Biochemistry 36, 7906-7916
    • (1997) Biochemistry , vol.36 , pp. 7906-7916
    • Prenner, E.J.1    Lewis, R.N.2    Neuman, K.C.3    Gruner, S.M.4    Kondejewski, L.H.5    Hodges, R.S.6    McElhaney, R.N.7
  • 46
    • 0025159302 scopus 로고
    • Induction of non-bilayer lipid structures by functional signal peptides
    • Killian, J. A., de Jong, A. M., Bijvelt, J., Verkleij, A. J., and de Kruijff, B. (1990) Induction of non-bilayer lipid structures by functional signal peptides EMBO J. 9, 815-819
    • (1990) EMBO J. , vol.9 , pp. 815-819
    • Killian, J.A.1    De Jong, A.M.2    Bijvelt, J.3    Verkleij, A.J.4    De Kruijff, B.5
  • 47
    • 0037062590 scopus 로고    scopus 로고
    • Lipid dependence of membrane anchoring properties and snorkeling behavior of aromatic and charged residues in transmembrane peptides
    • Strandberg, E., Morein, S., Rijkers, D. T. S., Liskamp, R. M. J., van der Wel, P. C. A., and Killian, J. A. (2002) Lipid dependence of membrane anchoring properties and snorkeling behavior of aromatic and charged residues in transmembrane peptides Biochemistry 41, 7190-7198
    • (2002) Biochemistry , vol.41 , pp. 7190-7198
    • Strandberg, E.1    Morein, S.2    Rijkers, D.T.S.3    Liskamp, R.M.J.4    Van Der Wel, P.C.A.5    Killian, J.A.6
  • 48
    • 33745700351 scopus 로고    scopus 로고
    • Coupling between lipid shape and membrane curvature
    • Cooke, I. R. and Deserno, M. (2006) Coupling between lipid shape and membrane curvature Biophys. J. 91, 487-495
    • (2006) Biophys. J. , vol.91 , pp. 487-495
    • Cooke, I.R.1    Deserno, M.2
  • 49
    • 66249127141 scopus 로고    scopus 로고
    • Sorting of lipids and proteins in membrane curvature gradients
    • Tian, A. and Baumgart, T. (2009) Sorting of lipids and proteins in membrane curvature gradients Biophys. J. 96, 2676-2688
    • (2009) Biophys. J. , vol.96 , pp. 2676-2688
    • Tian, A.1    Baumgart, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.