Microbialite formation in seawater of increased alkalinity, Satonda Crater Lake, Indonesia

Journal of Sedimentary Research

Volumn 73, Issue 1, 2003, Pages 105-127

  Arp, Gernot ^a   Reimer, Andreas ^a   Reitner, Joachim ^a  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM CARBONATE; CARBON; LAKE WATER;

ALKALINITY; BIOFILM; CRATER LAKE; CYANOBACTERIUM; MICROBIALITE; SEAWATER; CARBONATE SYSTEM; PALEOCEANOGRAPHY; STROMATOLITE;

ALKALINITY; BIOFILM; BIOFILM THICKNESS; BIOGEOCHEMICAL CYCLING; CYANOBACTERIUM; INDONESIA; ISLAND (GEOLOGICAL); MUCILAGE; THICKNESS;

INDONESIA; ASIA; EASTERN HEMISPHERE; EURASIA; SOUTHEAST ASIA; WORLD;

ALKALINITY; AMORPHOUS SILICON; BIOFILMS; BIOMINERALIZATION; CALCITE; CALCIUM CARBONATE; CARBON DIOXIDE; CARBONATE MINERALS; DEGASSING; DISSOLUTION; LAKES; MICROCRYSTALS; PH; PHYTOPLANKTON; REEFS; SEAWATER; SILICA; SILICON; SULFUR COMPOUNDS;

AEROBIC DEGRADATION; CACO3 PRECIPITATIONS; CARBONATE EQUILIBRIUMS; DIFFUSION CONTROLLED; DISSOLVED INORGANIC CARBON; EXTRA-CELLULAR POLYMERIC SUBSTANCES; MODEL CALCULATIONS; SILICA PRECIPITATION;

MAGNESIUM COMPOUNDS;

EID: 0037281941     PISSN: 15271404     EISSN: None     Source Type: Journal    
DOI: 10.1306/071002730105     Document Type: Article

References (86)

1. ADDADI, L., AND WEINER, S., 1985, Interactions between acidic proteins and crystals: stereo-chemical requirements in biomineralization: Proceedings of the National Academy of Sciences, U.S.A., v, 82, p. 4110-4114.
2. ARP, G., HOFMANN, J., AND REITNER, J., 1998, Microbial fabric formation in spring mounds ("microbialites") of alkaline salt lakes in the Badain Jaran Sand Sea. P.R. China: Palaios, v. 13, p. 581-592.
3. ARP, G., REITNER, J., WOHREIDE, G., AND LANDMANN, G., 1996. New data on microbial communities and related sponge fauna from the alkaline Satonda crater lake, in Reitner. J., Neuweiler, F., and Gunkel, F., eds., Global and Regional Controls on Biogenic Sedimentation. I. Reef Evolution, Research Reports: Göttinger Arbeiten zur Geologie und Paläontologie, Sonderband 2, p. 1-7.
4. ARP, G., REIMER, A., AND REITNER, J., 1999b. Calcification in cyanobacterial biofilms of alkaline salt lakes: European Journal of Phycology, v. 34, p. 393-403.
5. ARP, G., REIMER, A., AND REITNER, J., 2001, Photosynthesis-induced biofilm calcification and calcium concentrations in Phanerozoic oceans: Science, v. 292, p. 1701-1704.
6. ARP, G., THIEL, V., REIMER, A., MICHAELIS, W., AND REITNER, J., 1999a, Biofilm exopolymers control microbialite formation at thermal springs discharging into the alkaline Pyramid Lake, Nevada, U.S.A.: Sedimentary Geology, v. 126, p. 159-176.
7. BERNER, R.A., 1968, Calcium carbonate concretions formed by the decomposition of organic matter: Science, v. 159, p. 195-197.
8. BERNER, R.A., 1971, Bacterial processes effecting the precipitation of calcium carbonate in sediments, in Bricker, O.P., ed., Carbonate Cements: Baltimore, The Johns Hopkins University, Studies in Geology, v. 19, p. 247-251.
9. BRANT, D.A., AND CHRIST, M.D., 1990. Realistic conformational modeling of carbohydrates, in French, A.D., and Brady, J.W., eds., Computer Modeling of Carbohydrate Molecules: American Chemical Society, Symposium Series, v. 430, p. 42-68.
10. BROWN, M.J., AND LESTER, J.N., 1980, Comparison of bacterial extracellular polymer extraction methods: Applied and Environmental Microbiology, v. 40, p. 179-185.
11. CANFIELD, D.E., AND DES MARAIS, D.J., 1991, Aerobic sulfate reduction in microbial mats: Science, v. 251, p. 1471-1473.
12. CASTANIER, S., LE MÉTAYER-LEVREL, G., AND PERTHUISOT, J.P., 2000, Bacterial roles in the precipitation of carbonate minerals, in Riding, R.E., and Awramik, S.M., eds., Microbial Sediments: Berlin, Springer-Verlag, p. 32-39.
13. DEBON, S.J.J., AND TESTER, R.F., 2001, In vitro binding of calcium, iron and zinc by non-starch polysaccharides: Food Chemistry, v. 73, p. 401-410.
14. DE BROUWER, J.F.C., AND STAL, L.J., 2001, Short-term dynamics in microphytobenthos distribution and associated extracellular carbohydrates in surface sediments of an intertidal mudflat: Marine Ecology Progress Series, v. 218, p. 33-44.
15. DECHO, A.W., 1990, Microbial exopolymer secretions in ocean environments: Their role(s) in food webs and marine processes: Oceanography and Marine Biology: an Annual Review, v. 28, p. 73-153.
16. DÉFARGE, C., TRICHET, J., JAUNET, A.M., ROBERT, M., TRIBBLE, J., AND SANSONE, F.J., 1996, Texture of microbial sediments revealed by cryo-scanning electron microscopy: Journal of Sedimentary Research, v. 66, p. 935-947.
17. DILL, R.F., SHINN, E.A., JONES, A.T., KELLY, K., AND STEINEN, R.P., 1986, Giant subtidal stromatolites forming in normal salinity water: Nature, v. 324, p. 55-58.
18. DRAVIS, J.J., 1983, Hardened subtidal stromatolites, Bahamas: Science, v. 219, p. 385-386.
19. FORTIN, D., FERRIS, F.G., AND BEVERIDGE, T.J., 1997, Surface-mediated mineral development by bacteria: Reviews in Mineralogy, v. 35, p. 161-180.
20. FRÜND, C., AND COHEN, Y., 1992, Diurnal cycles of sulfate reduction under oxic conditions in microbial mats: Applied and Environmental Microbiology, v. 58, p. 70-77.
21. GEBELEIN, C.D., 1976, The effect of the physical, chemical and biological evolution of the Earth, in Walter, M.R., ed., Stromatolites: Amsterdam, Elsevier, Developments in Sedimentology, v. 20, p. 499-515.
22. GEITLER, L., 1932, Cyanophyceae: Rabenhorst's Kryptogamen-Flora von Deutschland, Österreich und der Schweiz, 2nd Edition: Koenigstein, Koeltz Scientific Books (Reprint 1985). v. 14, 1196 p.
23. GIVEN, R.K., AND WILKINSON, B.H., 1985, Kinetic control of morphology, composition and mineralogy of abiotic sedimentary carbonates: Journal of Sedimentary Petrology, v. 55, p. 109-119.
24. GOLUBIĆ, S., 1973, The relationship between blue-green algae and carbonate deposits, in Carr. N.G., and Whitton, B.A., eds., The Biology of Blue-Green Algae: Oxford, Blackwell, Botanical Monographs, v. 9, p. 434-472.
25. GOLUBIĆ, S., AND CAMPBELL, S.E., 1981, Biogenically formed aragonite concretions in marine Rivularia, in Monty, C.L.V., ed., Phanerozoic Stromatolites: Berlin. Springer-Verlag, p. 209-229.
26. GROTZINGER, J.P., 1990, Geochemical model for Proterozoic stromatolite decline: American Journal of Science, v. 290-A, p. 80-103.
27. GROTZINGER, J.P., 1994, Trends in Precambrian carbonate sediments and their implication for understanding evolution, in Bengtson, S., ed., Early Life on Earth: New York, Columbia University Press, p. 245-258.
28. GROTZINGER, J.P., AND KNOLL, A.H., 1995, Anomalous carbonate precipitates: is the Precambrian the key to the Permian? Palaios, v. 10, p. 578-596.
29. HARDIE, L.A., 1987, Dolomitization-a critical view of some current views: Journal of Sedimentary Petrology, v. 57, p. 166-183.
30. HARDIE, L.A., 1996, Secular variation in seawater chemistry: an explanation for the coupled secular variation in the mineralogies of marine limestones and potash evaporites over the past 600 m.y.: Geology, v. 24, p. 279-283.
31. JøRGENSEN, B.B., 1994, Sulfate reduction and thiosulfate transformation in a cyanobacterial mat during a diel oxygen cycle: FEMS (Federation of European Microbiological Societies) Microbiology Ecology, v. 13, p. 303-312.
32. KALKOWSKY, E., 1908, Oolith und Stromatolith im norddeutschen Buntsandstein: Zeitschrift der Deutschen Geologischen Gesellschaft, v. 60, p. 68-125.
33. KAWAGUCHI, T., AND DECHO, A.W., 2001, Potential roles of extracellular polymeric secretions (EPS) in regulating calcification. A study of marine stromatolites, Bahamas: Thalassas, v. 17, p. 11-19.
34. KAZMIERCZAK, J., AND KEMPE, S., 1990. Modern cyanobacterial analogs of Paleozoic stromatoporoids: Science, v. 250, p. 1244-1248.
35. KAZMIERCZAK, J., AND KEMPE, S., 1992, Recent cyanobacterial counterparts of Paleozoic Wetheredella and related problematic fossils: Palaios, v. 7, p. 294-304.
36. KELTS, K., AND HSÜ, K.J., 1978, Freshwater carbonate sedimentation, in Lerman, A., ed., Lakes: Chemistry, Geology, Physics: New York, Springer-Verlag, p. 295-323.
37. KEMPE, S., AND DEGENS, E.T., 1985, An early soda ocean?: Chemical Geology, v. 53, p. 95-108.
38. KEMPE, S., AND KAZMIERCZAK, J., 1990a, Calcium carbonate supersaturation and the formation of in situ calcified stromatolites, in Ittekkot, V.A., Kempe, S., Michaelis, W., and Spitzy, A., eds., Facets of Modern Biogeochemistry: Berlin, Springer-Verlag, p. 255-278.
39. KEMPE, S., AND KAZMIERCZAK, J., 1990b, Chemistry of stromatolites of the sea-linked Satonda Crater Lake, Indonesia: A recent model for the Precambrian sea?: Chemical Geology, v. 81, p. 299-310.
40. KEMPE, S., AND KAZMIERCZAK, J., 1993, Satonda Crater Lake, Indonesia: Hydrogeochemistry and Bicarbonates: Facies, v. 28, p. 1-32.
41. KEMPE, S., AND KAZMIERCZAK, J., 1994, The role of alkalinity in the evolution of ocean chemistry, organization of living systems, and biocalcification processes: Bulletin de l'Institut Océanographique Monaco, no. spéc. 13, p. 61-117.
42. KEMPE, S., KAZMIERCZAK, J., REIMER, A., LANDMANN, G., AND REITNER, J., 1996, Microbialites and hydrochemistry of the Crater Lake of Satonda- a status report, in Reitner, J., Neuweiler, F., and Gunkel, F., eds., Global and Regional Controls on Biogenic Sedimentation. I. Reef Evolution. Research Reports: Göttinger Arbeiten zur Geologie und Paläontologie, Sonderband 2, p. 59-63.
43. KEMPE, S., KAZMIERCZAK, J., REIMER, A., LANDMANN, G., AND REITNER, J., 1997, Satonda: a porthole view into the oceanic past, in Tomascik, T., Mah, A.J., Nontji, A., and Moosa, M.K., eds., The Ecology of Indonesian Seas: Jakarta, Periplus Editions, p. 156-166.
44. KNOLL, A.H., FAIRCHILD, I.J., AND SWETT, K., 1993, Calcified microbes in Neoproterozoic carbonates: Implications for our understanding of the Proterozoic/Cambrian Transition: Palaios, v. 8, p. 512-525.
45. KOMǍREK, J., AND ANAGNOSTIDIS, K., 1986, Modern approach to the classification system of cyanophytes: 2-Chroococcales: Archiv für Hydrobiologie. Suppl. 73 (Algological Studies 43), p. 157-226.
46. KRUMBEIN, W.E., 1979, Calcification by bacteria and algae, in Trudinger, P.A., and Swaine, D.J., eds., Biogeochemical Cycling of Mineral-Forming Elements: Amsterdam, Elsevier, Studies in Environmental Science, v. 3, p. 47-68.
47. LOWENSTAM, H.A., AND WEINER, S., 1989, On biomineralization: Oxford, U.K., Oxford University Press, 324 p.
48. LOWENSTEIN, T.K., TIMOFEEFF, M.N., BRENNAN, S.T., HARDIE, L.A., AND DEMICCO, R.V., 2001, Oscillations in Phanerozoic seawater chemistry: evidence from fluid inclusions: Science, v. 294, p. 1086-1088.
49. LYONS, W.B., LONG, D.T., HINES, M.E., GAUDETTE, H.E., AND ARMSTRONG, P.B., 1984, Calcification of cyanobacterial mats in Solar Lake, Sinai: Geology, v. 12, p. 623-626.
50. MACKENZIE, F.T., AND AGEGIAN, C.R., 1989, Biomineralization and tentative links to plate tectonics, in Crick, R.E., ed., Origin, Evolution, and Modern Aspects of Biomineralization in Plants and Animals: New York, Plenum Press, p. 11-27.
51. MACKENZIE, F.T., AND PIGOTT, J.D., 1981, Tectonic controls of Phanerozoic sedimentary rock cycling: Journal of the Geological Society London, v, 138, p. 183-196.
52. MANN, S., 1988, Molecular recognition in biomineralization: Nature, v. 322, p. 119-124.
53. MANZ, W., ARP, G., SCHUMANN-KINDEL, G., SZEWZYK, U., AND REITNER, J., 2000, Widefield deconvolution epifluorescence microscopy combined with fluorescent in situ hybridization shows the spatial arrangement of bacteria in sponge tissue: Journal of Microbiological Methods, v. 40, p. 125-134.
54. MORSE, J.W., AND MACKENZIE, F.T., 1998, Hadean ocean carbonate geochemistry: Aquatic Geochemistry, v. 4, p. 301-319.
55. NORDSTROM, D.K., PLUMMER, L.N., WIGLEY, T.M.L., WOLERY, T.J., BALI, J.W., JENNE, E.A., BASSETT, R.L., CRERAR, D.A., FLORENCE, T.M., FRITZ, B., HOFFMAN, M., HOLDREN, G.R., JR., LAFON, G.M., MATTIGOD, S.V., MCDUFF, R.E., MOREL, F., REDDY, M.M., SPOSITO, G., AND THRAILKILL, J., 1979, A comparison of computerized chemical models for equilibrium calculations in aqueous systems, in Jenne, E.A., ed., Chemical Modeling in Aqueous Systems, Speciation, Sorption, Solubility, and Kinetics: American Chemical Society, Symposium Series, v. 93, p. 857-892.
56. PARKHURST, D.L., 1995, User's guide to PHREEQC- a computer program for speciation, reaction-path, advective-transport, and inverse geochemical calculations: U.S. Geological Survey, Water-Resources Investigations, Report 95-4227, 143 p.
57. PAUL, J., AND PERYT, T.M., 1999, Kalkowsky's stromatolites revisited (Lower Triassic Buntsandstein, Harz Mountains, Germany): Palaeogeography, Palaeoclimatology, Palaeoecology, v. 161, p. 435-458.
58. PAULI, C.K., CHANTON, J.P., NEUMANN, A.C., COSTON, J.A., AND MARTENS, C.S., 1992, Indicators of methane-derived carbonates and chemosynthetic organic carbon deposits: examples from the Florida Escarpment: Palaios, v. 7, p. 361-375.
59. PECKMANN, J., REIMER, A., LUTH, U., HANSEN, B.T., HEINICKE, C., HOEFS, J., AND REITNER, J., 2001, Methane-derived carbonates and authigenic pyrite from northwestern Black Sea: Marine Geology, v. 177, p. 129-150.
60. PENTECOST, A., 1991, Calcification processes in algae and cyanobacteria, in Riding. R., ed., Calcareous Algae and Stromatolites: Berlin, Springer-Verlag. p. 3-20.
61. REID, R.P., VISSCHER, P.T., DECHO, A.W., STOLZ, J.F., BEBOUT, B.M., DUPRAZ, C., MACINTYRE, I.G., PAERL, H.W., PINCKNEY, J.L., PRUFERT-BEBOUT, L., STEPPE, T.F., AND DESMARAIS, D.J., 2000, The role of microbes in accretion, lamination and early lithification of modern marine stromatolites: Nature, v. 406, p. 989-992.
62. REIMER, A., 1996, Hydrochemie und Geochemie der Sedimente und Porenwässer des hochalkalinen Van Sees in der Osttürkei: Doctoral thesis, Faculty of Geosciences, University of Hamburg, 123 p.
63. REITNER, J., GAUTRET, P., MARIN, F. AND NEUWEILER, F., 1995, Automicrites in a modern microbialite-Formation model via organic matrices (Lizard Island, Great Barrier Reef, Australia): Bulletin de l'Institut Océanographique Monaco, no. spéc. 14, p. 237-263.
64. RIDING, R., 1982, Cyanophyte calcification and changes in ocean chemistry: Nature, v. 299, p. 814-815.
65. RIDING, R., 1991a. Classification of microbial carbonates, in Riding, R., ed., Calcareous Algae and Stromatolites: Berlin, Springer-Verlag, p. 21-51.
66. RIDING, R., 1991b, Calcified cyanobacteria, in Riding, R., ed., Calcareous Algae and Stromatolites: Berlin, Springer-Verlag, p. 55-87.
67. RIDING, R., 2000, Microbial carbonates: the geological record of calcified bacterial-algal mats and biofilms: Sedimentology, v. 47, suppl. 1, p. 179-214.
68. RITGER, S., CARSON, B., AND SUESS, E., 1987, Methane-derived autigenic carbonates formed by subduction-induced pore-water expulsion along the Oregon/Washington margin: Geological Society of America, Bulletin, v. 98, p. 147-156.
69. ROUGEAUX, H., GUEZENNEC, M., CHE, L.M., PAYRI, C., DESLANDES, E., AND GUEZENNEC, J., 2001, Microbial communities and exopolysaccharides from Polynesian mats: Marine Biotechnology, v. 3, p. 181-187.
70. 2 change: evaluating geochemical and paleobiological approaches: Earth-Science Reviews, v. 54, p. 349-392.
71. SANDBERG, P.A., 1983, An oscillating trend in Phanerozoic non-skeletal carbonate mineralogy: Nature, v. 305, p. 19-22.
72. SIKES, C.S., WIERZBICKI, A., AND FABRY, V.J., 1994, From atomic to global scales in biomineralization: Bulletin de l'Institut Océanographique Monaco, no. spéc. 14 (1), p. 1-47.
73. SIMKISS, K., AND WILBUR, K.M., 1989, Biomineralization: Cell Biology and Mineral Deposition: San Diego, Academic Press, 337 p.
74. SPENCER, R.J., AND HARDIE, L.A., 1990, Control of seawater composition by mixing of river waters and mid-ocean ridge hydrothermal brines, in Spencer, R.J., and Chou, I.M., eds., Fluid-Mineral Interactions: a Tribute to H.P. Eugster: The Geochemical Society, Special Publication 2, p. 409-419.
75. SPENCER, R.J., EUGSTER, H.P., AND JONES, B.F., 1985, Geochemistry of Great Salt Lake, Utah II: Pleistocene-Holocene evolution: Geochimica et Cosmochimica Acta, v. 49, p. 739-747.
76. SUTHERLAND, I.W., 1977, Enzymes acting on bacterial surface carbohydrates, in Sutherland, I., ed., Surface Carbohydrates of the Prokaryotic Cell: London, Academic Press, p. 209-245.
77. THOMPSON, J.B., AND FERRIS, F.G., 1990, Cyanobacterial precipitation of gypsum, calcite, and magnesite from natural alkaline lake water: Geology, v. 18, p. 995-998.
78. TRICHET, J., AND DÉFARGE, C., 1995, Non-biologically supported organomineralization: Bulletin de l'Institut Océanographique Monaco, no. spéc, 14, p. 203-236.
79. VAN GEMERDEN, H., 1993, Microbial mats: A joint venture: Marine Geology, v. 113, p. 3-25.
80. VISSCHER, P.T., PRINS, R.A., AND VAN GEMERDEN, H., 1992, Rates of sulfate reduction and thiosulfate consumption in a marine microbial mat: FEMS (Federation of European Microbiological Societies) Microbiology Ecology, v. 86, p. 283-394.
81. VISSCHER, P.T., REID, R.P., AND BEBOUT, B.M., 2000, Microscale observation of sulfate reduction: correlation of microbial activity with lithified micritic laminae in modern marine stromatolites: Geology, v. 28, p. 919-922.
82. WESTBROEK, P., DE JONG, E.W., VAN DER WAL, P., BORMAN, A.H., DE VRIND, J.P.M., KOK, D., DE BRUUN, W.C., AND PARKER, S.B., 1984, Mechanisms of calcification in the marine alga Emiliania huxleyi: Philosophical Transactions of the Royal Society London, Series B, v. 304, p. 435-444.
83. WILKINSON, B.H., 1979, Biomineralization, paleoceanography and the evolution of calcareous marine organisms: Geology, v. 7, p. 524-527.
84. WILKINSON, B.H., AND GIVEN, R.K., 1986, Secular variation in biotic marine carbonates; constraints on Phanerozoic atmospheric carbon dioxide contents and oceanic Mg/Ca ratios: Journal of Geology, v. 94, p. 321-333.
85. WILKINSON, B.H., OWEN, R.M., AND CARROLL, A.R., 1985, Submarine hydrothermal weathering, global eustasy, and carbonate polymorphism in Phanerozoic marine oolites: Journal of Sedimentary Petrology, v. 55, p. 171-183.
86. WINGENDER, J., NEU, T.R., AND FLEMMING, H.C., EDS., 1999, Microbial Extracellular Polymeric Substances: Berlin, Springer-Verlag, 251 p.